ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20a19 |
|---|---|
| Clone Library Name | barley_pub |
>IF6_HUMAN (P56537) Eukaryotic translation initiation factor 6 (eIF-6) (B4| integrin interactor) (CAB) (p27(BBP)) (B(2)GCN homolog) Length = 245 Score = 154 bits (388), Expect(2) = 1e-37 Identities = 76/97 (78%), Positives = 82/97 (84%) Frame = -1 Query: 424 LLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFC 245 L+G YC SN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAGM VNDW AFC Sbjct: 147 LVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFC 206 Query: 244 GSDTTATELSVIESVFKLREGQPTAIVDDMRKSLIDS 134 G DTT+TELSV+ESVFKL E QP+ I MR SLIDS Sbjct: 207 GLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDS 243 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/38 (57%), Positives = 26/38 (68%) Frame = -3 Query: 503 LTRATEELIADVLGVEVFRQTIAGNILVGRLLCIX*QG 390 L R TEE++ADVL VEVFRQT+A +LVG QG Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQG 158 Score = 21.9 bits (45), Expect(2) = 1e-37 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -2 Query: 534 NDHVAXTHXDLDK 496 ND+VA H DLD+ Sbjct: 111 NDYVALVHPDLDR 123
>IF6_MOUSE (O55135) Eukaryotic translation initiation factor 6 (eIF-6) (B4| integrin interactor) (CAB) (p27(BBP)) Length = 245 Score = 152 bits (384), Expect(2) = 4e-37 Identities = 75/97 (77%), Positives = 82/97 (84%) Frame = -1 Query: 424 LLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFC 245 L+G YC SN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAGM VNDW AFC Sbjct: 147 LVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFC 206 Query: 244 GSDTTATELSVIESVFKLREGQPTAIVDDMRKSLIDS 134 G DTT+TELSV+ESVFKL E +P+ I MR SLIDS Sbjct: 207 GLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDS 243 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/38 (57%), Positives = 26/38 (68%) Frame = -3 Query: 503 LTRATEELIADVLGVEVFRQTIAGNILVGRLLCIX*QG 390 L R TEE++ADVL VEVFRQT+A +LVG QG Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQG 158 Score = 21.9 bits (45), Expect(2) = 4e-37 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -2 Query: 534 NDHVAXTHXDLDK 496 ND+VA H DLD+ Sbjct: 111 NDYVALVHPDLDR 123
>IF6_ARATH (O22290) Eukaryotic translation initiation factor 6 (eIF-6)| Length = 247 Score = 144 bits (363), Expect = 2e-34 Identities = 67/113 (59%), Positives = 90/113 (79%) Frame = -1 Query: 466 LGLRYSVRQLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEV 287 LG+ + + L+G YC+ SN GG+VH +T++E++ EL+ L+QVPLVAGTVNRGS+V Sbjct: 135 LGVEVYRQTIANNELVGSYCSLSNNGGMVHSNTNVEEMVELANLVQVPLVAGTVNRGSQV 194 Query: 286 IAAGMTVNDWTAFCGSDTTATELSVIESVFKLREGQPTAIVDDMRKSLIDSYV 128 I+AG+TVNDWTAFCGSDTTA ELSV+ ++FKL + QP + +MRKSLID+YV Sbjct: 195 ISAGLTVNDWTAFCGSDTTAVELSVVNNIFKLVQSQPDFVGSEMRKSLIDTYV 247 Score = 43.5 bits (101), Expect = 4e-04 Identities = 21/29 (72%), Positives = 25/29 (86%) Frame = -3 Query: 503 LTRATEELIADVLGVEVFRQTIAGNILVG 417 L + TEE+I+DVLGVEV+RQTIA N LVG Sbjct: 123 LEKDTEEIISDVLGVEVYRQTIANNELVG 151
>IF6_DROME (P56538) Probable eukaryotic translation initiation factor 6| (eIF-6) Length = 245 Score = 135 bits (341), Expect(2) = 1e-32 Identities = 65/97 (67%), Positives = 79/97 (81%) Frame = -1 Query: 427 SLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAF 248 SL+G Y SN+GG+VHP TSI+D DELS+LLQVPLVAGTVNRGSEV+AAGM VNDW +F Sbjct: 146 SLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVPLVAGTVNRGSEVLAAGMVVNDWLSF 205 Query: 247 CGSDTTATELSVIESVFKLREGQPTAIVDDMRKSLID 137 G +TTATE+SVIESVFKL + QP + +R +LI+ Sbjct: 206 VGMNTTATEISVIESVFKLNQAQPATVTTKLRAALIE 242 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/38 (63%), Positives = 27/38 (71%) Frame = -3 Query: 503 LTRATEELIADVLGVEVFRQTIAGNILVGRLLCIX*QG 390 L + TEE+IADVL VEVFRQTIA N LVG + QG Sbjct: 121 LDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQG 158 Score = 23.1 bits (48), Expect(2) = 1e-32 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 534 NDHVAXTHXDLDK 496 ND+VA H DLDK Sbjct: 111 NDYVALVHPDLDK 123
>IF6_SCHPO (O94476) Eukaryotic translation initiation factor 6 (eIF-6)| Length = 244 Score = 136 bits (342), Expect = 4e-32 Identities = 65/98 (66%), Positives = 82/98 (83%) Frame = -1 Query: 424 LLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFC 245 L G YCA SN+G LVHP TSI++ DELS+LLQVPLVAGT+NRGS+VI AG+ VNDW AF Sbjct: 147 LTGSYCALSNQGALVHPRTSIQEQDELSSLLQVPLVAGTINRGSDVIGAGLVVNDWCAFA 206 Query: 244 GSDTTATELSVIESVFKLREGQPTAIVDDMRKSLIDSY 131 G DTTATEL+V ES+FKL++ QP+AI+ + R +L++SY Sbjct: 207 GLDTTATELAVCESIFKLQDAQPSAIISN-RDTLVESY 243 Score = 48.9 bits (115), Expect = 9e-06 Identities = 23/38 (60%), Positives = 28/38 (73%) Frame = -3 Query: 503 LTRATEELIADVLGVEVFRQTIAGNILVGRLLCIX*QG 390 + R TEE+IADVL VEVFRQT+AGN+L G + QG Sbjct: 121 IERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQG 158
>IF6_YEAST (Q12522) Eukaryotic translation initiation factor 6 (eIF-6)| Length = 245 Score = 132 bits (333), Expect(2) = 5e-31 Identities = 65/121 (53%), Positives = 89/121 (73%) Frame = -1 Query: 493 QLRSLLQMCLGLRYSVRQLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVA 314 + L+ LG+ + + L+G YC+ SN+GGLVHP TS++D +ELS+LLQVPLVA Sbjct: 124 ETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVA 183 Query: 313 GTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREGQPTAIVDDMRKSLIDS 134 GTVNRGS V+ AGM VND+ A G DTTA ELSVIES+F+L++ QP +I ++R +LI++ Sbjct: 184 GTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTLIET 243 Query: 133 Y 131 Y Sbjct: 244 Y 244 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/38 (68%), Positives = 30/38 (78%) Frame = -3 Query: 503 LTRATEELIADVLGVEVFRQTIAGNILVGRLLCIX*QG 390 + R TEELI+DVLGVEVFRQTI+GNILVG + QG Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQG 158 Score = 21.2 bits (43), Expect(2) = 5e-31 Identities = 7/13 (53%), Positives = 10/13 (76%) Frame = -2 Query: 534 NDHVAXTHXDLDK 496 ND+VA H D+D+ Sbjct: 111 NDYVALVHPDIDR 123
>IF6_CAEEL (O62106) Eukaryotic translation initiation factor 6 (eIF-6)| Length = 246 Score = 115 bits (289), Expect(2) = 9e-29 Identities = 59/103 (57%), Positives = 76/103 (73%), Gaps = 1/103 (0%) Frame = -1 Query: 439 LQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVND 260 L + SL+G YC S+ G LV T E E++ LLQ+P+VAGT NRGSE+I AGM VND Sbjct: 142 LAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIPVVAGTCNRGSELIGAGMVVND 201 Query: 259 WTAFCGSDTTATELSVIESVFKLRE-GQPTAIVDDMRKSLIDS 134 W AFCG D+T+TELSV+ES+FKL E G PT+I + +R +LI+S Sbjct: 202 WVAFCGLDSTSTELSVVESIFKLGEQGAPTSISNQLRDTLIES 244 Score = 30.4 bits (67), Expect(2) = 9e-29 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = -3 Query: 503 LTRATEELIADVLGVEVFRQTIAGNILVG 417 ++ TE+ + +VL VEVFR ++A N LVG Sbjct: 121 ISAETEQALVEVLKVEVFRVSLAQNSLVG 149
>IF6_TRYCR (Q9XYP3) Eukaryotic translation initiation factor 6 (eIF-6)| (Fragment) Length = 114 Score = 110 bits (275), Expect = 3e-24 Identities = 49/104 (47%), Positives = 76/104 (73%), Gaps = 3/104 (2%) Frame = -1 Query: 439 LQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVND 260 + E +L+G Y +N+G +VHP T +D+DE+++LLQVP+VAGT+NRG+ I +G+ VND Sbjct: 8 IAENALVGSYAVVNNKGCMVHPKTPAQDMDEIASLLQVPVVAGTINRGNAAIGSGLVVND 67 Query: 259 WTAFCGSDTTATELSVIESVFKLRE---GQPTAIVDDMRKSLID 137 W AFCG +TTATE++V+E +F+LR G ++ +R +L+D Sbjct: 68 WAAFCGLNTTATEITVVERIFQLRRDLGGGRANLLQQLRDTLVD 111
>IF6_BETVU (O81920) Eukaryotic translation initiation factor 6 (eIF-6)| (Fragment) Length = 193 Score = 90.5 bits (223), Expect = 3e-18 Identities = 51/90 (56%), Positives = 60/90 (66%), Gaps = 1/90 (1%) Frame = -1 Query: 550 NCISCK*-PCCXHTP*P*QGQLRSLLQMCLGLRYSVRQLQEISLLGGYCAXSNRGGLVHP 374 NCI+C HT + L+ LG+ + + L+G YCA +N+GGLVHP Sbjct: 106 NCIACNDYVALTHTDL--DKETEELIADVLGVEVFGQTIAGNILVGSYCAITNKGGLVHP 163 Query: 373 HTSIEDLDELSTLLQVPLVAGTVNRGSEVI 284 HTSIEDLDELSTLLQVPLVAGTVNRGSEVI Sbjct: 164 HTSIEDLDELSTLLQVPLVAGTVNRGSEVI 193
>IF6_AERPE (Q9YD27) Translation initiation factor 6 (aIF-6)| Length = 233 Score = 65.1 bits (157), Expect = 1e-10 Identities = 38/115 (33%), Positives = 58/115 (50%) Frame = -1 Query: 550 NCISCK*PCCXHTP*P*QGQLRSLLQMCLGLRYSVRQLQEISLLGGYCAXSNRGGLVHPH 371 N I C C +P + L+++ LG+ + + +G +NRGGL HP Sbjct: 112 NVIVCNDRACLASPGLEKEALKTVSDT-LGVEVVEGSVAGVYTVGSAIVVTNRGGLAHPD 170 Query: 370 TSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIE 206 S E+L LS + +VP AGT+N G E + G+ N + A G DTT E++ I+ Sbjct: 171 ASEEELKFLSDVFKVPFEAGTINFGVEFVRTGLVANSYGALVGEDTTGPEIARIQ 225
>IF6_METKA (Q8TUY5) Translation initiation factor 6 (aIF-6)| Length = 221 Score = 60.8 bits (146), Expect(2) = 1e-09 Identities = 32/97 (32%), Positives = 53/97 (54%) Frame = -1 Query: 481 LLQMCLGLRYSVRQLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVN 302 +++ LG R +L + +G +++G +VHP + E+++ +S +L V + GTVN Sbjct: 124 VIESVLGGRVVRGELGGVKTVGSAGVANSKGAVVHPGATEEEMERVSEVLGVDVEVGTVN 183 Query: 301 RGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKL 191 RGS + G+ VN A G DTT EL+ +E L Sbjct: 184 RGSPYVGVGIVVNSKGAVVGEDTTGPELARLEDALYL 220 Score = 30.4 bits (67), Expect = 3.4 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -3 Query: 485 ELIADVLGVEVFRQTIAGNILVGRLLCIX*QG 390 E + + L VEV R T+AG+ LVG LL + G Sbjct: 37 ERVKEALDVEVVRTTVAGSNLVGALLAVNSNG 68 Score = 20.8 bits (42), Expect(2) = 1e-09 Identities = 8/12 (66%), Positives = 8/12 (66%) Frame = -2 Query: 534 NDHVAXTHXDLD 499 NDH A H DLD Sbjct: 107 NDHGALVHPDLD 118
>IF6_PYRAE (Q8ZTU1) Translation initiation factor 6 (aIF-6)| Length = 220 Score = 54.7 bits (130), Expect = 2e-07 Identities = 32/96 (33%), Positives = 49/96 (51%) Frame = -1 Query: 487 RSLLQMCLGLRYSVRQLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGT 308 R ++ LG+ V + L+G ++RG LV P + +DL +LS +V + GT Sbjct: 123 RKVVADVLGVEVIVDTIAGNPLVGALAVLNSRGLLVAPEATDDDLKKLSEYFKVRVDVGT 182 Query: 307 VNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESV 200 VNRG + G+ VND A G +T EL ++ V Sbjct: 183 VNRGKSFLRGGIVVNDNGALVGDETAGPELMRMQQV 218 Score = 36.2 bits (82), Expect = 0.063 Identities = 19/38 (50%), Positives = 25/38 (65%) Frame = -3 Query: 503 LTRATEELIADVLGVEVFRQTIAGNILVGRLLCIX*QG 390 L + +++ADVLGVEV TIAGN LVG L + +G Sbjct: 118 LEPSARKVVADVLGVEVIVDTIAGNPLVGALAVLNSRG 155
>IF6_SULSO (Q980G0) Translation initiation factor 6 (aIF-6)| Length = 223 Score = 53.9 bits (128), Expect = 3e-07 Identities = 29/79 (36%), Positives = 44/79 (55%) Frame = -1 Query: 442 QLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVN 263 ++ ++ +G +N+GGLVH TS ++L EL L V + GTVN GS I +G+ N Sbjct: 140 KIAQMITVGSVGVITNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIKSGLVAN 199 Query: 262 DWTAFCGSDTTATELSVIE 206 D G+ TT E+ I+ Sbjct: 200 DKGTLVGASTTGPEILRIQ 218
>IF6_SULTO (Q971I4) Translation initiation factor 6 (aIF-6)| Length = 223 Score = 52.4 bits (124), Expect = 8e-07 Identities = 30/81 (37%), Positives = 44/81 (54%) Frame = -1 Query: 439 LQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVND 260 + I +G +++ GLVH T+ E+LD+LS L +V + GTVN GS I +G+ N Sbjct: 141 IANIITVGSVGVITDKAGLVHIDTTEEELDKLSKLFRVKIDTGTVNFGSAFIHSGLIANR 200 Query: 259 WTAFCGSDTTATELSVIESVF 197 GS TT E+ I+ F Sbjct: 201 NGVLVGSATTGPEILRIQRAF 221
>IF6_SULAC (P38619) Translation initiation factor 6 (aIF-6)| Length = 223 Score = 51.6 bits (122), Expect = 1e-06 Identities = 29/81 (35%), Positives = 43/81 (53%) Frame = -1 Query: 439 LQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVND 260 + I +G +++ GLVH + E+L +LS L +V L +GTVN GS I +G+ N Sbjct: 141 IANIITVGSVAVITDKAGLVHIDATEEELKKLSELFKVKLDSGTVNFGSVFIRSGLVANR 200 Query: 259 WTAFCGSDTTATELSVIESVF 197 GS TT E+ I+ F Sbjct: 201 NGVLVGSSTTGAEILRIQRAF 221
>IF6_METTH (O27648) Translation initiation factor 6 (aIF-6)| Length = 222 Score = 51.6 bits (122), Expect = 1e-06 Identities = 30/89 (33%), Positives = 43/89 (48%) Frame = -1 Query: 448 VRQLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMT 269 V L ++++G A +NRG L++P S E++ + L V GTVN G +I A Sbjct: 134 VSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSV 193 Query: 268 VNDWTAFCGSDTTATELSVIESVFKLREG 182 N G +TT EL+ IE EG Sbjct: 194 ANSNGVLVGEETTGPELARIEEALGFLEG 222
>IF6_METJA (Q60357) Translation initiation factor 6 (aIF-6)| Length = 228 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Frame = -1 Query: 466 LGLRYSVRQLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSE 290 L + + + E+ +G +N+G L HP ++L+ L +L +V + GT N+G+ Sbjct: 135 LNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTT 194 Query: 289 VIAAGMTVNDWTAFCGSDTTATELSVIESVFKL 191 + A + N A G DTT EL +IE L Sbjct: 195 SVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227
>IF6_PYRHO (O58264) Translation initiation factor 6 (aIF-6)| Length = 227 Score = 50.8 bits (120), Expect = 2e-06 Identities = 30/87 (34%), Positives = 42/87 (48%) Frame = -1 Query: 466 LGLRYSVRQLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEV 287 LG+ + + +G +N+GGLVHP TS E+L+ LS L +V + GT N G Sbjct: 135 LGVEVERGVIAGLHAVGSAGVVTNKGGLVHPETSDEELEWLSDLFKVDVYVGTANMGVPY 194 Query: 286 IAAGMTVNDWTAFCGSDTTATELSVIE 206 + M N G TT E+ IE Sbjct: 195 VGTCMLANSNGVVVGHLTTGPEIVKIE 221
>IF6_PYRFU (Q8U3S8) Translation initiation factor 6 (aIF-6)| Length = 227 Score = 50.8 bits (120), Expect = 2e-06 Identities = 29/87 (33%), Positives = 43/87 (49%) Frame = -1 Query: 466 LGLRYSVRQLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEV 287 LG+ + I +G +N+GGLVHP + E+L+ LS L +V + GT N G Sbjct: 135 LGVEVERGVIAGIVAVGSAGVVTNKGGLVHPEATDEELEWLSDLFKVDVYVGTANMGVPY 194 Query: 286 IAAGMTVNDWTAFCGSDTTATELSVIE 206 + + M N + G TT E+ IE Sbjct: 195 VGSCMLANSYGVVVGHLTTGPEIVKIE 221
>IF6_ARCFU (O28214) Translation initiation factor 6 (aIF-6)| Length = 215 Score = 50.1 bits (118), Expect = 4e-06 Identities = 24/75 (32%), Positives = 42/75 (56%) Frame = -1 Query: 430 ISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTA 251 I +G +NRGGL +P+ + + +L + V ++ GTVN G++++ +G+ N Sbjct: 136 IKTVGMAAVVTNRGGLANPNINEWEAKKLQEVAGVEVLTGTVNFGTDMVGSGLVANSKGY 195 Query: 250 FCGSDTTATELSVIE 206 G DTT EL ++E Sbjct: 196 VVGRDTTGFELGIVE 210
>IF6_METMA (Q8PYQ3) Translation initiation factor 6 (aIF-6)| Length = 219 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/91 (27%), Positives = 47/91 (51%) Frame = -1 Query: 457 RYSVRQLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAA 278 R ++ ++ + + G +N+G LVHP ++ + + L + +P+ GT N G++++ + Sbjct: 132 RGTIAGIKNVGMAG---VVTNKGLLVHPKVTVSEREALEEIFGLPVNIGTTNFGTQMLGS 188 Query: 277 GMTVNDWTAFCGSDTTATELSVIESVFKLRE 185 G+ N GS+TT EL IE E Sbjct: 189 GLLANSKNFVAGSETTGPELGRIEEALGFLE 219 Score = 30.4 bits (67), Expect = 3.4 Identities = 20/80 (25%), Positives = 35/80 (43%) Frame = -1 Query: 430 ISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTA 251 ++ +G ++ LVHP S L+ ++ L+V + GT+ V AG+ N Sbjct: 94 LNAVGNIVLANDSAALVHPELSDRALEIIARTLKVEVYRGTIAGIKNVGMAGVVTNK-GL 152 Query: 250 FCGSDTTATELSVIESVFKL 191 T +E +E +F L Sbjct: 153 LVHPKVTVSEREALEEIFGL 172
>IF6_PYRAB (Q9UYI6) Translation initiation factor 6 (aIF-6)| Length = 227 Score = 49.7 bits (117), Expect = 5e-06 Identities = 30/92 (32%), Positives = 42/92 (45%) Frame = -1 Query: 466 LGLRYSVRQLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEV 287 LG+ + + +G +N+GGLVHP S E+L+ LS L +V + GT N G Sbjct: 135 LGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVDVYVGTANMGVPY 194 Query: 286 IAAGMTVNDWTAFCGSDTTATELSVIESVFKL 191 + M N G TT E+ IE L Sbjct: 195 VGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226
>IF6_PYRKO (Q5JGT4) Translation initiation factor 6 (aIF-6)| Length = 229 Score = 49.3 bits (116), Expect = 7e-06 Identities = 26/72 (36%), Positives = 37/72 (51%) Frame = -1 Query: 421 LGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCG 242 +G +N+GGLVHP + E+L+ LS L V + GT N G + + M N + G Sbjct: 151 VGSVGVVTNKGGLVHPEATDEELEWLSDLFGVDIYVGTANMGVPFVGSCMLANSYGVVVG 210 Query: 241 SDTTATELSVIE 206 TT E+ IE Sbjct: 211 HLTTGPEIVKIE 222
>IF6_METAC (Q8TIN4) Translation initiation factor 6 (aIF-6)| Length = 218 Score = 47.4 bits (111), Expect = 3e-05 Identities = 25/91 (27%), Positives = 45/91 (49%) Frame = -1 Query: 457 RYSVRQLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAA 278 R ++ ++ + + G +N+G LVHP + + + L + P+ GT N G++++ + Sbjct: 131 RGTIAGIKNVGMAG---VVTNKGLLVHPKVTASEREVLEKIFGFPVNIGTTNFGTQMLGS 187 Query: 277 GMTVNDWTAFCGSDTTATELSVIESVFKLRE 185 G+ N GS+TT EL IE E Sbjct: 188 GLLANSKNFVAGSETTGPELGRIEEALGFLE 218 Score = 33.1 bits (74), Expect = 0.53 Identities = 21/78 (26%), Positives = 37/78 (47%) Frame = -1 Query: 430 ISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTA 251 ++ +G ++ LVHP S + L+ ++ L+V + GT+ V AG+ N Sbjct: 93 LNAVGNIVFANDSAALVHPDLSDKALEAIARTLKVDVYRGTIAGIKNVGMAGVVTNK-GL 151 Query: 250 FCGSDTTATELSVIESVF 197 TA+E V+E +F Sbjct: 152 LVHPKVTASEREVLEKIF 169
>IF6_THEVO (Q97CU0) Translation initiation factor 6 (aIF-6)| Length = 218 Score = 46.2 bits (108), Expect = 6e-05 Identities = 27/96 (28%), Positives = 46/96 (47%) Frame = -1 Query: 487 RSLLQMCLGLRYSVRQLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGT 308 R ++ LG+ + I +G +++G LV+P T ++L+ L +V + +GT Sbjct: 121 RKEIEDTLGVETIRTSIGNILTVGSASVLTSKGMLVNPETDDDELEFLKDFFKVSVKSGT 180 Query: 307 VNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESV 200 N GS + A + N G DTT E+ I+ V Sbjct: 181 ANFGSIYVGASIVANSKGILVGRDTTPIEIDRIDDV 216
>IF6_METMP (Q6M156) Translation initiation factor 6 (aIF-6)| Length = 227 Score = 45.8 bits (107), Expect = 8e-05 Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 1/102 (0%) Frame = -1 Query: 493 QLRSLLQMCLGLRYSVRQLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVA 314 + R ++ L + V E+ +G +++G LVHP T +L+ + +L+V V Sbjct: 124 RFRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVE 183 Query: 313 -GTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKL 191 GT NRG + A + N A G DT+ E+ IE L Sbjct: 184 RGTANRGVTSVGACILANTKGAVVGGDTSGPEILKIEEALDL 225
>IF6_THEAC (Q9HM16) Translation initiation factor 6 (aIF-6)| Length = 216 Score = 45.1 bits (105), Expect = 1e-04 Identities = 27/96 (28%), Positives = 46/96 (47%) Frame = -1 Query: 487 RSLLQMCLGLRYSVRQLQEISLLGGYCAXSNRGGLVHPHTSIEDLDELSTLLQVPLVAGT 308 R ++ LG+ + I +G +++G LV+P T ++L+ L +V + +GT Sbjct: 119 RKEIEDTLGVETIRTTIGNILTVGSAGILTSKGMLVNPETDDDELEFLRDFFKVSVKSGT 178 Query: 307 VNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESV 200 N GS + A + N G DTT E+ I+ V Sbjct: 179 ANFGSIYVGASIVANSKGVLVGKDTTPIEMDRIDDV 214
>FSCN3_MOUSE (Q9QXW4) Fascin-3 (Testis fascin)| Length = 498 Score = 32.3 bits (72), Expect = 0.90 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +2 Query: 254 SPVVHRHARSNDLATTVHGSSDKRDLEECGQLIKIFNGCVRMDQST 391 SP+ H +AR++ + + LEECG L+ +GC ++ ST Sbjct: 150 SPIYHSYARADHTVGRIWVDAAIPCLEECGFLLHFQDGCYHLETST 195
>GLMM_STAAW (P65705) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 451 Score = 30.4 bits (67), Expect = 3.4 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 418 GGYCAXSNRGGLVHPHTSI-EDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCG 242 GGY N+G HP + D +L+ L+AG ++ G+EV+ G+ A+ Sbjct: 30 GGYVLAHNKGEK-HPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLT 88 Query: 241 SDTTATELSVIES 203 D A EL V+ S Sbjct: 89 RDMGA-ELGVMIS 100
>GLMM_STAAU (P0C0V7) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 451 Score = 30.4 bits (67), Expect = 3.4 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 418 GGYCAXSNRGGLVHPHTSI-EDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCG 242 GGY N+G HP + D +L+ L+AG ++ G+EV+ G+ A+ Sbjct: 30 GGYVLAHNKGEK-HPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLT 88 Query: 241 SDTTATELSVIES 203 D A EL V+ S Sbjct: 89 RDMGA-ELGVMIS 100
>GLMM_STAAS (Q6G7F2) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 451 Score = 30.4 bits (67), Expect = 3.4 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 418 GGYCAXSNRGGLVHPHTSI-EDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCG 242 GGY N+G HP + D +L+ L+AG ++ G+EV+ G+ A+ Sbjct: 30 GGYVLAHNKGEK-HPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLT 88 Query: 241 SDTTATELSVIES 203 D A EL V+ S Sbjct: 89 RDMGA-ELGVMIS 100
>GLMM_STAAR (Q6GER6) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 451 Score = 30.4 bits (67), Expect = 3.4 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 418 GGYCAXSNRGGLVHPHTSI-EDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCG 242 GGY N+G HP + D +L+ L+AG ++ G+EV+ G+ A+ Sbjct: 30 GGYVLAHNKGEK-HPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLT 88 Query: 241 SDTTATELSVIES 203 D A EL V+ S Sbjct: 89 RDMGA-ELGVMIS 100
>GLMM_STAAN (P99087) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 451 Score = 30.4 bits (67), Expect = 3.4 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 418 GGYCAXSNRGGLVHPHTSI-EDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCG 242 GGY N+G HP + D +L+ L+AG ++ G+EV+ G+ A+ Sbjct: 30 GGYVLAHNKGEK-HPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLT 88 Query: 241 SDTTATELSVIES 203 D A EL V+ S Sbjct: 89 RDMGA-ELGVMIS 100
>GLMM_STAAM (P65704) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 451 Score = 30.4 bits (67), Expect = 3.4 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 418 GGYCAXSNRGGLVHPHTSI-EDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCG 242 GGY N+G HP + D +L+ L+AG ++ G+EV+ G+ A+ Sbjct: 30 GGYVLAHNKGEK-HPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLT 88 Query: 241 SDTTATELSVIES 203 D A EL V+ S Sbjct: 89 RDMGA-ELGVMIS 100
>GLMM_STAAC (Q5HE43) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 451 Score = 30.4 bits (67), Expect = 3.4 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 418 GGYCAXSNRGGLVHPHTSI-EDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCG 242 GGY N+G HP + D +L+ L+AG ++ G+EV+ G+ A+ Sbjct: 30 GGYVLAHNKGEK-HPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLT 88 Query: 241 SDTTATELSVIES 203 D A EL V+ S Sbjct: 89 RDMGA-ELGVMIS 100
>THIL_METJA (Q60337) Probable thiamine-monophosphate kinase (EC 2.7.4.16)| (Thiamine-phosphate kinase) Length = 319 Score = 30.4 bits (67), Expect = 3.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -1 Query: 355 LDELSTLLQVPLVAGTVNRGSEVIAAG 275 LD+ S L P+V G NRG E+I +G Sbjct: 107 LDDFSKLYDCPVVGGDTNRGDELILSG 133
>NTDB_BACSU (O07565) NTD biosynthesis operon putative hydrolase ntdB (EC| 3.-.-.-) Length = 286 Score = 28.9 bits (63), Expect = 10.0 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Frame = +2 Query: 80 TKSTVQEPHPMPFDHLDVAVNQRLPHVIDDRRGLAFSQLEDALD----DGELGSGCV 238 T STV+ P + F D PH ID+++ +LED L+ DGEL G V Sbjct: 11 TLSTVEHPQYIVFCDFDETY---FPHTIDEQKQQDIYELEDYLEQKSKDGELIIGWV 64
>RL5_SYNPX (Q7U4I8) 50S ribosomal protein L5| Length = 179 Score = 28.9 bits (63), Expect = 10.0 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%) Frame = -1 Query: 346 LSTLLQVP-LVAGTVNRGSEVIAAGM-----TVNDWTAFCGSDTTATELSVIESVFKLRE 185 L+ + +VP +V TVNRG AA +VN+ G T + FK+R+ Sbjct: 21 LTNIHEVPKVVKVTVNRGLGEAAANAKSLEASVNELAQITGQKVVVTRAKKAIAAFKIRQ 80 Query: 184 GQPTAIVDDMR 152 G P +R Sbjct: 81 GMPIGCAVTLR 91
>RDRP_BSNV (Q8AZL8) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 867 Score = 28.9 bits (63), Expect = 10.0 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Frame = +2 Query: 107 PMPFDHLDVAVNQRLPHVI------DDRRGLAFSQLEDALDDGELGSG 232 P PF H DVA+ +++ + + + G F Q D + + + GSG Sbjct: 118 PTPFGHYDVALLKQMTYQLTNGKDNPEEEGTTFRQFRDTIVEQQYGSG 165 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,702,863 Number of Sequences: 219361 Number of extensions: 1443827 Number of successful extensions: 4225 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 4105 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4221 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
