>gb|AF479052.1| Triticum aestivum p60 katanin mRNA, partial cds
          Length = 405

 Score =  266 bits (134), Expect = 6e-68
 Identities = 167/178 (93%)
 Strand = Plus / Minus

                                                                       
Query: 288 ttaggtgccgaacccgaacggcgacttgctcctgctgccgccttcgccgtactgttcgtt 347
           |||| ||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 405 ttagctgccgaacccgaatggcgatttgctcctgctgccgccttctccgtactgctcgtt 346

                                                                       
Query: 348 ccattttcttagctcgttcatgctcgtggcgtcgaaagcaacggatgggctcaccttggc 407
           |||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||
Sbjct: 345 ccattttcttagctcgttcatgcttgtggcatcgaaggcaacagatgggctcaccttggc 286

                                                                     
Query: 408 tttcgcttggacaaagtcatccagctttaaggaccttaaagaagttttcgtactgccc 465
           ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 285 tttcgcttggacaaagtcatccaactttaaggacctcaaagaagttttcgtactgccc 228

>dbj|AK058549.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C07, full
            insert sequence
          Length = 1466

 Score =  137 bits (69), Expect = 4e-29
 Identities = 141/165 (85%)
 Strand = Plus / Minus

                                                                        
Query: 285  atgttaggtgccgaacccgaacggcgacttgctcctgctgccgccttcgccgtactgttc 344
            ||||||| |||||||||| || || || || |||||||| || ||||| |||||||| ||
Sbjct: 1108 atgttagctgccgaacccaaatggtgatttactcctgcttccaccttccccgtactgctc 1049

                                                                        
Query: 345  gttccattttcttagctcgttcatgctcgtggcgtcgaaagcaacggatgggctcacctt 404
            ||||||||||| || ||||||||||||||||||||| ||||| |||||||| || |||||
Sbjct: 1048 gttccattttcgtaactcgttcatgctcgtggcgtcaaaagcgacggatggacttacctt 989

                                                         
Query: 405  ggctttcgcttggacaaagtcatccagctttaaggaccttaaaga 449
             ||||| ||||| ||||| || |||| |||||||| ||| |||||
Sbjct: 988  tgcttttgcttgcacaaaatcctccaactttaagggcctcaaaga 944

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  109 bits (55), Expect = 9e-21
 Identities = 97/111 (87%)
 Strand = Plus / Plus

                                                                           
Query: 285     atgttaggtgccgaacccgaacggcgacttgctcctgctgccgccttcgccgtactgttc 344
               ||||||| |||||||||| || || || || |||||||| || ||||| |||||||| ||
Sbjct: 6514918 atgttagctgccgaacccaaatggtgatttactcctgcttccaccttccccgtactgctc 6514977

                                                                  
Query: 345     gttccattttcttagctcgttcatgctcgtggcgtcgaaagcaacggatgg 395
               ||||||||||| || ||||||||||||||||||||| ||||| ||||||||
Sbjct: 6514978 gttccattttcgtaactcgttcatgctcgtggcgtcaaaagcgacggatgg 6515028

>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0690H04
          Length = 137319

 Score =  109 bits (55), Expect = 9e-21
 Identities = 97/111 (87%)
 Strand = Plus / Plus

                                                                         
Query: 285   atgttaggtgccgaacccgaacggcgacttgctcctgctgccgccttcgccgtactgttc 344
             ||||||| |||||||||| || || || || |||||||| || ||||| |||||||| ||
Sbjct: 31294 atgttagctgccgaacccaaatggtgatttactcctgcttccaccttccccgtactgctc 31353

                                                                
Query: 345   gttccattttcttagctcgttcatgctcgtggcgtcgaaagcaacggatgg 395
             ||||||||||| || ||||||||||||||||||||| ||||| ||||||||
Sbjct: 31354 gttccattttcgtaactcgttcatgctcgtggcgtcaaaagcgacggatgg 31404

>ref|XM_467801.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1422

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 85/100 (85%)
 Strand = Plus / Minus

                                                                        
Query: 317  tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcatgctcgtgg 376
            |||||||||| ||||| || ||||||||||||||||||||||  |||||||||||||| |
Sbjct: 1393 tcctgctgccaccttcaccatactgttcgttccattttcttaattcgttcatgctcgtcg 1334

                                                    
Query: 377  cgtcgaaagcaacggatgggctcaccttggctttcgcttg 416
            | ||  | | ||| || ||||| ||||||||||| |||||
Sbjct: 1333 catcatacgaaacagacgggcttaccttggcttttgcttg 1294

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                          
Query: 317      tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcatgctcgt 374
                |||||||||| ||||| || ||||||||||||||||||||||  ||||||||||||||
Sbjct: 31501220 tcctgctgccaccttcaccatactgttcgttccattttcttaattcgttcatgctcgt 31501163

>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0078N11
          Length = 155168

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                        
Query: 317    tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcatgctcgt 374
              |||||||||| ||||| || ||||||||||||||||||||||  ||||||||||||||
Sbjct: 136617 tcctgctgccaccttcaccatactgttcgttccattttcttaattcgttcatgctcgt 136560

>ref|NM_103899.3| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/
            nucleotide binding AT1G50140 mRNA, complete cds
          Length = 2063

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                        
Query: 317  tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcatgctcgtgg 376
            |||||||||| ||||| || || || |||||||||||||| ||||| |||||  | || |
Sbjct: 1900 tcctgctgcctccttcaccatattgctcgttccattttctcagctcattcatcgtagtcg 1841

                                              
Query: 377  cgtcgaaagcaacggatgggctcaccttggcttt 410
            | ||| | || || |||||||||||||| |||||
Sbjct: 1840 catcgtacgccacagatgggctcaccttagcttt 1807

>gb|AC015445.3|F2J10 Sequence of BAC F2J10 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 91720

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                
Query: 317  tcctgctgccgccttcgccgtactgttcgttccattttcttagctcgttcat 368
            |||||||||| ||||| || || || |||||||||||||| ||||| |||||
Sbjct: 6136 tcctgctgcctccttcaccatattgctcgttccattttctcagctcattcat 6085

>gb|AY112377.1| Zea mays CL24781_1 mRNA sequence
          Length = 720

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 317 tcctgctgccgccttcgccgtactgttcgttccattttct 356
           |||||||||| ||||| || ||||| ||||||||||||||
Sbjct: 474 tcctgctgccaccttccccatactgctcgttccattttct 513

>emb|CR936847.6| Mouse DNA sequence from clone DN-393H17 on chromosome 11, complete
              sequence
          Length = 170807

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 34     gttcttggtacaaaatagttgt 55
              ||||||||||||||||||||||
Sbjct: 149222 gttcttggtacaaaatagttgt 149243

>emb|AL662908.7| Mouse DNA sequence from clone RP23-478O10 on chromosome 11 Contains two
             NACHT, leucine rich repeat and PYD containing 1 (NALP1)
             pseudogenes, complete sequence
          Length = 96115

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 34    gttcttggtacaaaatagttgt 55
             ||||||||||||||||||||||
Sbjct: 14069 gttcttggtacaaaatagttgt 14090

>emb|BX682542.5| Mouse DNA sequence from clone RP23-125N5 on chromosome 4, complete
             sequence
          Length = 144906

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 228   cagaggaaggagcagagtggcc 249
             ||||||||||||||||||||||
Sbjct: 88009 cagaggaaggagcagagtggcc 87988

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 93       gacaacagtacaacattagaa 113
                |||||||||||||||||||||
Sbjct: 27977601 gacaacagtacaacattagaa 27977621

>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
             sequence
          Length = 133889

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    gacaacagtacaacattagaa 113
             |||||||||||||||||||||
Sbjct: 47425 gacaacagtacaacattagaa 47405

>gb|AC091523.23| Mus musculus strain C57BL/6J clone rp23-77a8 map 1, complete sequence
          Length = 235509

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 228    cagaggaaggagcagagtggc 248
              |||||||||||||||||||||
Sbjct: 123978 cagaggaaggagcagagtggc 123998

>gb|AF286884.4| Homo sapiens chromosome 8 clone RP11-597D18 map 8p21-p11, complete
              sequence
          Length = 207519

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 41     gtacaaaatagttgtacctatgtat 65
              |||||||||||||| ||||||||||
Sbjct: 203876 gtacaaaatagttggacctatgtat 203852

>gb|AC087855.6| Homo sapiens chromosome 8, clone RP11-431M3, complete sequence
          Length = 161256

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 41     gtacaaaatagttgtacctatgtat 65
              |||||||||||||| ||||||||||
Sbjct: 149181 gtacaaaatagttggacctatgtat 149157

>gb|AC087671.9| Homo sapiens chromosome 8, clone RP11-597D18, complete sequence
          Length = 207503

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 41   gtacaaaatagttgtacctatgtat 65
            |||||||||||||| ||||||||||
Sbjct: 3645 gtacaaaatagttggacctatgtat 3669

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 93       gacaacagtacaacattagaa 113
                |||||||||||||||||||||
Sbjct: 28068925 gacaacagtacaacattagaa 28068945

>gb|AC125116.4| Mus musculus BAC clone RP24-261C22 from chromosome 16, complete sequence
          Length = 180726

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    gtgagtaccaaaaaccagag 232
              ||||||||||||||||||||
Sbjct: 107706 gtgagtaccaaaaaccagag 107725

>gb|AC135415.27| Medicago truncatula clone mth2-10b9, complete sequence
          Length = 130045

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     acaacagtacaacattagaa 113
              ||||||||||||||||||||
Sbjct: 108854 acaacagtacaacattagaa 108835

>emb|AL161912.15| Human DNA sequence from clone RP11-403N16 on chromosome 9 Contains a
             novel pseudogene and a novel gene, complete sequence
          Length = 102624

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    ggtacaaaatagttgtacctatgt 63
             |||||||||||||||||| |||||
Sbjct: 85574 ggtacaaaatagttgtacatatgt 85597

>gb|AC027801.10| Homo sapiens chromosome 17, clone RP11-304F15, complete sequence
          Length = 164914

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    ccagaggaaggagcagagtg 246
              ||||||||||||||||||||
Sbjct: 142235 ccagaggaaggagcagagtg 142254

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 321     gctgccgccttcgccgtact 340
               ||||||||||||||||||||
Sbjct: 1703474 gctgccgccttcgccgtact 1703455

>gb|AC009720.19| Homo sapiens chromosome 17, clone RP11-1094H24, complete sequence
          Length = 146101

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    ccagaggaaggagcagagtg 246
              ||||||||||||||||||||
Sbjct: 140594 ccagaggaaggagcagagtg 140575

>gb|AC136968.2| Pan troglodytes clone RP43-93C21, complete sequence
          Length = 172660

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   ccagaggaaggagcagagtg 246
             ||||||||||||||||||||
Sbjct: 41318 ccagaggaaggagcagagtg 41337

>gb|U01781.1|MGU01781 Mycoplasma genitalium random genomic clone hsc3, partial cds
          Length = 292

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  aacagtacaacattagaaac 115
           ||||||||||||||||||||
Sbjct: 1   aacagtacaacattagaaac 20

>gb|AF012348.1|AF012348 Gallus gallus smooth muscle gamma actin (gamma actin) gene, complete
            cds
          Length = 4921

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  aaccagaggaaggagcagag 244
            ||||||||||||||||||||
Sbjct: 3233 aaccagaggaaggagcagag 3214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,077,460
Number of Sequences: 3902068
Number of extensions: 3077460
Number of successful extensions: 55880
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55741
Number of HSP's gapped (non-prelim): 137
length of query: 485
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 463
effective length of database: 17,147,199,772
effective search space: 7939153494436
effective search space used: 7939153494436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)