Clone Name | rbasd20a06 |
---|---|
Clone Library Name | barley_pub |
>SUC3_ARATH (O80605) Sucrose transport protein SUC3 (Sucrose permease 3)| (Sucrose-proton symporter 3) (Sucrose transporter 2) Length = 594 Score = 72.4 bits (176), Expect = 7e-13 Identities = 36/85 (42%), Positives = 46/85 (54%) Frame = -2 Query: 537 FSVXXXXXXXXXXXXXXXXXXLNLAIVAPQIVVSLGAGPWDLLFGGGNIPXXXXXXXXXX 358 FSV LNLAIV PQ++VSLGAGPWD LFGGGN+P Sbjct: 510 FSVTAEVTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDQLFGGGNLPAFVLASVAAF 569 Query: 357 XXXXXXVIKLPKLSNNYQSAGFHMG 283 + +LP LS++++S GFH+G Sbjct: 570 AAGVIALQRLPTLSSSFKSTGFHIG 594
>SUC4_ARATH (Q9FE59) Sucrose transport protein SUC4 (Sucrose permease 4)| (Sucrose-proton symporter 4) (Sucrose transporter 4) Length = 510 Score = 52.8 bits (125), Expect = 6e-07 Identities = 23/50 (46%), Positives = 30/50 (60%) Frame = -2 Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIPXXXXXXXXXXXXXXXXVIKLPK 322 NLAIV PQ++VS+G+GPWD LFGGGN P ++ LP+ Sbjct: 451 NLAIVIPQVIVSVGSGPWDQLFGGGNSPALAVGAATGFIGGIVAILALPR 500
>SUC1_ARATH (Q39232) Sucrose transport protein SUC1 (Sucrose permease 1)| (Sucrose-proton symporter 1) Length = 513 Score = 49.7 bits (117), Expect = 5e-06 Identities = 21/28 (75%), Positives = 25/28 (89%) Frame = -2 Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388 NLAIV PQ++VSLG GP+D LFGGGN+P Sbjct: 449 NLAIVIPQMIVSLGGGPFDALFGGGNLP 476
>SUC2_ARATH (Q39231) Sucrose transport protein SUC2 (Sucrose permease 2)| (Sucrose-proton symporter 2) (Sucrose transporter 1) Length = 512 Score = 48.9 bits (115), Expect = 9e-06 Identities = 21/28 (75%), Positives = 25/28 (89%) Frame = -2 Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388 NLAIV PQ+V+S+G GP+D LFGGGNIP Sbjct: 448 NLAIVVPQMVISVGGGPFDELFGGGNIP 475
>SUT_SPIOL (Q03411) Sucrose transport protein (Sucrose permease)| (Sucrose-proton symporter) Length = 525 Score = 47.8 bits (112), Expect = 2e-05 Identities = 19/28 (67%), Positives = 24/28 (85%) Frame = -2 Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388 NLAIV PQ+ VS+ +GPWD +FGGGN+P Sbjct: 462 NLAIVVPQMFVSVTSGPWDAMFGGGNLP 489
>SUC9_ARATH (Q9FG00) Sucrose transport protein SUC9 (Sucrose permease 9)| (Sucrose-proton symporter 9) Length = 491 Score = 45.8 bits (107), Expect = 7e-05 Identities = 19/28 (67%), Positives = 23/28 (82%) Frame = -2 Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388 N+AIV PQ++VS G GP D LFGGGN+P Sbjct: 443 NMAIVIPQMIVSFGVGPIDALFGGGNLP 470
>SUC8_ARATH (Q9ZVK6) Sucrose transport protein SUC8 (Sucrose permease 8)| (Sucrose-proton symporter 8) Length = 492 Score = 45.8 bits (107), Expect = 7e-05 Identities = 19/28 (67%), Positives = 23/28 (82%) Frame = -2 Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388 N+AIV PQ++VS G GP D LFGGGN+P Sbjct: 444 NMAIVIPQMIVSFGVGPIDALFGGGNLP 471
>SUC6_ARATH (Q6A329) Probable sucrose transport protein SUC6 (Sucrose permease| 6) (Sucrose-proton symporter 6) Length = 492 Score = 44.7 bits (104), Expect = 2e-04 Identities = 19/28 (67%), Positives = 22/28 (78%) Frame = -2 Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388 N+ IV PQ+VVS G GP D LFGGGN+P Sbjct: 444 NMTIVIPQMVVSFGVGPIDALFGGGNLP 471
>SUC7_ARATH (Q67YF8) Probable sucrose transport protein SUC7 (Sucrose permease| 7) (Sucrose-proton symporter 7) Length = 491 Score = 43.1 bits (100), Expect = 5e-04 Identities = 18/28 (64%), Positives = 22/28 (78%) Frame = -2 Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388 N+AIV PQ++VS G GP D LFG GN+P Sbjct: 443 NMAIVIPQMIVSFGVGPIDALFGDGNLP 470
>SUC5_ARATH (Q9C8X2) Sucrose transport protein SUC5 (Sucrose permease 5)| (Sucrose-proton symporter 5) Length = 512 Score = 40.0 bits (92), Expect = 0.004 Identities = 16/28 (57%), Positives = 21/28 (75%) Frame = -2 Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388 N+AI PQ++VS +GP D FGGGN+P Sbjct: 448 NIAICIPQMIVSFSSGPLDAQFGGGNLP 475
>GAGD2_HUMAN (Q9HD64) G antigen family D 2 protein (XAGE-1 protein)| Length = 160 Score = 31.6 bits (70), Expect = 1.5 Identities = 19/56 (33%), Positives = 22/56 (39%) Frame = -3 Query: 425 AHGTCSSGEGTSRHSPWPRSSHWQPEFSR*SSYPSCRTTTNPPDSTWAENTEPRAG 258 AHG +R PRS Q + YPS R+T NP W T P G Sbjct: 5 AHGPSCLVTAITREEGGPRSGGAQAKLGCCWGYPSPRSTWNPDRRFWTPQTGPGEG 60
>PPHLN_HUMAN (Q8NEY8) Periphilin-1 (Gastric cancer antigen Ga50)| Length = 458 Score = 30.8 bits (68), Expect = 2.5 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 3/93 (3%) Frame = -3 Query: 410 SSGEGTSRHSPWPRSSHW--QPEFSR*SSYPSCRTTTNPPDSTWAE-NTEPRAGSRLLCV 240 + GE T++ +P P + QP R R TT PD TW + R+L Sbjct: 367 NEGEETAQSAPQPPQAPQPLQPRKKRVRRTTQLRRTTGAPDITWGMLKKTTQEAERILLR 426 Query: 239 TSTDTQPEHN*TLIPILSFVYMGNDSFCQIHNK 141 T T PE+ + +LS V+ + + NK Sbjct: 427 TQTPFTPEN--LFLAMLSVVHCNSRKDVKPENK 457 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,075,325 Number of Sequences: 219361 Number of extensions: 1386860 Number of successful extensions: 3336 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3239 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3335 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)