ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SUC3_ARATH (O80605) Sucrose transport protein SUC3 (Sucrose perm... 72 7e-13
2SUC4_ARATH (Q9FE59) Sucrose transport protein SUC4 (Sucrose perm... 53 6e-07
3SUC1_ARATH (Q39232) Sucrose transport protein SUC1 (Sucrose perm... 50 5e-06
4SUC2_ARATH (Q39231) Sucrose transport protein SUC2 (Sucrose perm... 49 9e-06
5SUT_SPIOL (Q03411) Sucrose transport protein (Sucrose permease) ... 48 2e-05
6SUC9_ARATH (Q9FG00) Sucrose transport protein SUC9 (Sucrose perm... 46 7e-05
7SUC8_ARATH (Q9ZVK6) Sucrose transport protein SUC8 (Sucrose perm... 46 7e-05
8SUC6_ARATH (Q6A329) Probable sucrose transport protein SUC6 (Suc... 45 2e-04
9SUC7_ARATH (Q67YF8) Probable sucrose transport protein SUC7 (Suc... 43 5e-04
10SUC5_ARATH (Q9C8X2) Sucrose transport protein SUC5 (Sucrose perm... 40 0.004
11GAGD2_HUMAN (Q9HD64) G antigen family D 2 protein (XAGE-1 protein) 32 1.5
12PPHLN_HUMAN (Q8NEY8) Periphilin-1 (Gastric cancer antigen Ga50) 31 2.5

>SUC3_ARATH (O80605) Sucrose transport protein SUC3 (Sucrose permease 3)|
           (Sucrose-proton symporter 3) (Sucrose transporter 2)
          Length = 594

 Score = 72.4 bits (176), Expect = 7e-13
 Identities = 36/85 (42%), Positives = 46/85 (54%)
 Frame = -2

Query: 537 FSVXXXXXXXXXXXXXXXXXXLNLAIVAPQIVVSLGAGPWDLLFGGGNIPXXXXXXXXXX 358
           FSV                  LNLAIV PQ++VSLGAGPWD LFGGGN+P          
Sbjct: 510 FSVTAEVTADSGGGQGLAIGVLNLAIVIPQMIVSLGAGPWDQLFGGGNLPAFVLASVAAF 569

Query: 357 XXXXXXVIKLPKLSNNYQSAGFHMG 283
                 + +LP LS++++S GFH+G
Sbjct: 570 AAGVIALQRLPTLSSSFKSTGFHIG 594



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>SUC4_ARATH (Q9FE59) Sucrose transport protein SUC4 (Sucrose permease 4)|
           (Sucrose-proton symporter 4) (Sucrose transporter 4)
          Length = 510

 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 23/50 (46%), Positives = 30/50 (60%)
 Frame = -2

Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIPXXXXXXXXXXXXXXXXVIKLPK 322
           NLAIV PQ++VS+G+GPWD LFGGGN P                ++ LP+
Sbjct: 451 NLAIVIPQVIVSVGSGPWDQLFGGGNSPALAVGAATGFIGGIVAILALPR 500



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>SUC1_ARATH (Q39232) Sucrose transport protein SUC1 (Sucrose permease 1)|
           (Sucrose-proton symporter 1)
          Length = 513

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 21/28 (75%), Positives = 25/28 (89%)
 Frame = -2

Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388
           NLAIV PQ++VSLG GP+D LFGGGN+P
Sbjct: 449 NLAIVIPQMIVSLGGGPFDALFGGGNLP 476



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>SUC2_ARATH (Q39231) Sucrose transport protein SUC2 (Sucrose permease 2)|
           (Sucrose-proton symporter 2) (Sucrose transporter 1)
          Length = 512

 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 21/28 (75%), Positives = 25/28 (89%)
 Frame = -2

Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388
           NLAIV PQ+V+S+G GP+D LFGGGNIP
Sbjct: 448 NLAIVVPQMVISVGGGPFDELFGGGNIP 475



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>SUT_SPIOL (Q03411) Sucrose transport protein (Sucrose permease)|
           (Sucrose-proton symporter)
          Length = 525

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 19/28 (67%), Positives = 24/28 (85%)
 Frame = -2

Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388
           NLAIV PQ+ VS+ +GPWD +FGGGN+P
Sbjct: 462 NLAIVVPQMFVSVTSGPWDAMFGGGNLP 489



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>SUC9_ARATH (Q9FG00) Sucrose transport protein SUC9 (Sucrose permease 9)|
           (Sucrose-proton symporter 9)
          Length = 491

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = -2

Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388
           N+AIV PQ++VS G GP D LFGGGN+P
Sbjct: 443 NMAIVIPQMIVSFGVGPIDALFGGGNLP 470



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>SUC8_ARATH (Q9ZVK6) Sucrose transport protein SUC8 (Sucrose permease 8)|
           (Sucrose-proton symporter 8)
          Length = 492

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = -2

Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388
           N+AIV PQ++VS G GP D LFGGGN+P
Sbjct: 444 NMAIVIPQMIVSFGVGPIDALFGGGNLP 471



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>SUC6_ARATH (Q6A329) Probable sucrose transport protein SUC6 (Sucrose permease|
           6) (Sucrose-proton symporter 6)
          Length = 492

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 19/28 (67%), Positives = 22/28 (78%)
 Frame = -2

Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388
           N+ IV PQ+VVS G GP D LFGGGN+P
Sbjct: 444 NMTIVIPQMVVSFGVGPIDALFGGGNLP 471



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>SUC7_ARATH (Q67YF8) Probable sucrose transport protein SUC7 (Sucrose permease|
           7) (Sucrose-proton symporter 7)
          Length = 491

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = -2

Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388
           N+AIV PQ++VS G GP D LFG GN+P
Sbjct: 443 NMAIVIPQMIVSFGVGPIDALFGDGNLP 470



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>SUC5_ARATH (Q9C8X2) Sucrose transport protein SUC5 (Sucrose permease 5)|
           (Sucrose-proton symporter 5)
          Length = 512

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = -2

Query: 471 NLAIVAPQIVVSLGAGPWDLLFGGGNIP 388
           N+AI  PQ++VS  +GP D  FGGGN+P
Sbjct: 448 NIAICIPQMIVSFSSGPLDAQFGGGNLP 475



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>GAGD2_HUMAN (Q9HD64) G antigen family D 2 protein (XAGE-1 protein)|
          Length = 160

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = -3

Query: 425 AHGTCSSGEGTSRHSPWPRSSHWQPEFSR*SSYPSCRTTTNPPDSTWAENTEPRAG 258
           AHG        +R    PRS   Q +      YPS R+T NP    W   T P  G
Sbjct: 5   AHGPSCLVTAITREEGGPRSGGAQAKLGCCWGYPSPRSTWNPDRRFWTPQTGPGEG 60



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>PPHLN_HUMAN (Q8NEY8) Periphilin-1 (Gastric cancer antigen Ga50)|
          Length = 458

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = -3

Query: 410 SSGEGTSRHSPWPRSSHW--QPEFSR*SSYPSCRTTTNPPDSTWAE-NTEPRAGSRLLCV 240
           + GE T++ +P P  +    QP   R       R TT  PD TW       +   R+L  
Sbjct: 367 NEGEETAQSAPQPPQAPQPLQPRKKRVRRTTQLRRTTGAPDITWGMLKKTTQEAERILLR 426

Query: 239 TSTDTQPEHN*TLIPILSFVYMGNDSFCQIHNK 141
           T T   PE+    + +LS V+  +    +  NK
Sbjct: 427 TQTPFTPEN--LFLAMLSVVHCNSRKDVKPENK 457


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,075,325
Number of Sequences: 219361
Number of extensions: 1386860
Number of successful extensions: 3336
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3335
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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