Clone Name | rbasd19p24 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK065414.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022J10, full insert sequence Length = 1348 Score = 440 bits (222), Expect = e-120 Identities = 418/482 (86%), Gaps = 1/482 (0%) Strand = Plus / Minus Query: 187 ctgttatatcgtgttctttttgtttgcccggaacatgagaaggcgatctctgtattgagc 246 |||||| ||| |||||||||| |||||||||||||||| ||| |||||||||||||||| Sbjct: 1113 ctgttaaatcatgttctttttctttgcccggaacatgaaaagctgatctctgtattgagc 1054 Query: 247 agcatctttataacgttcctcaacagcagcaacaagcatgccgcgcaccaaatcaaactc 306 ||||||||| || ||||||||||||||||| || ||||| ||| |||||||||||||| Sbjct: 1053 agcatctttgtagcgttcctcaacagcagcgaccagcatattgcggaccaaatcaaactc 994 Query: 307 ctgggcttcaaagcaaggctggtcgccgggcttgtccagtctcgcgtattggatttggtc 366 ||||| ||||||||||| || ||| | ||| |||| ||||| | |||||||| |||||| Sbjct: 993 ttgggcctcaaagcaaggttgatcgtcaggcctgtcaagtcttgtgtattggaattggtc 934 Query: 367 agagttcacgtagctcccagttggctttggctgtatcactttcagaccgttgttgtatgc 426 ||| | || |||||| ||| ||| |||| |||| ||||||| || ||||| || || Sbjct: 933 tgagcttacatagctctcagatggtgttggttgtacaactttcaatccattgttatacgc 874 Query: 427 aatgcgcttattgacttgtataggaaccttgcaccggaaagcaatgttgatggcatctga 486 || ||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 873 tatacgcctattcacttgtataggaaccttacaccggaaagcaatgttgatggcatctga 814 Query: 487 tggcttgagatcaaaactaataacctcttcttcatttccagtctttgcaagatacaatct 546 |||||||||||| || |||||| ||| |||||||| ||| |||| ||||||||||||| Sbjct: 813 tggcttgagatctaagctaatagtctcctcttcattgccaatcttagcaagatacaatcg 754 Query: 547 agagtagtaagcatcatgcaccatttctgtaatccgcaccaaacgtaccgtgtatcccat 606 ||| ||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct: 753 agaatagtatgcatcatggaccatttctgtaatccgcaccaaacgtaccgcatatcccat 694 Query: 607 catttcggtcatctcctttaccacattataaattgttggccttggaatcccgaatgttcc 666 | ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 693 cctttcggtcatctcctttaccacattataaatagttggccttggaat-tcgaatgttcc 635 Query: 667 ga 668 || Sbjct: 634 ga 633
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 93.7 bits (47), Expect = 7e-16 Identities = 59/63 (93%) Strand = Plus / Plus Query: 533 gcaagatacaatctagagtagtaagcatcatgcaccatttctgtaatccgcaccaaacgt 592 ||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 29067850 gcaagatacaatcgagaatagtatgcatcatggaccatttctgtaatccgcaccaaacgt 29067909 Query: 593 acc 595 ||| Sbjct: 29067910 acc 29067912 Score = 93.7 bits (47), Expect = 7e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 452 accttgcaccggaaagcaatgttgatggcatctgatggcttgagatcaaaactaataacc 511 ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct: 29067443 accttacaccggaaagcaatgttgatggcatctgatggcttgagatctaagctaatagtc 29067502 Query: 512 tcttcttcatt 522 || |||||||| Sbjct: 29067503 tcctcttcatt 29067513 Score = 89.7 bits (45), Expect = 1e-14 Identities = 51/53 (96%) Strand = Plus / Plus Query: 599 tatcccatcatttcggtcatctcctttaccacattataaattgttggccttgg 651 ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 29068210 tatcccatcctttcggtcatctcctttaccacattataaatagttggccttgg 29068262 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 246 cagcatctttataacgttcctcaacagcagcaacaagcatgccgcgcaccaaatcaaact 305 |||||||||| || ||||||||||||||||| || ||||| ||| ||||||||||||| Sbjct: 29066714 cagcatctttgtagcgttcctcaacagcagcgaccagcatattgcggaccaaatcaaact 29066773 Query: 306 cctgggcttcaaagcaagg 324 | ||||| ||||||||||| Sbjct: 29066774 cttgggcctcaaagcaagg 29066792 Score = 71.9 bits (36), Expect = 3e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 187 ctgttatatcgtgttctttttgtttgcccggaacatgagaaggcgatctctgtattgagc 246 |||||| ||| |||||||||| |||||||||||||||| ||| |||||||||||||||| Sbjct: 29066393 ctgttaaatcatgttctttttctttgcccggaacatgaaaagctgatctctgtattgagc 29066452 Score = 42.1 bits (21), Expect = 2.3 Identities = 93/117 (79%) Strand = Plus / Plus Query: 339 tgtccagtctcgcgtattggatttggtcagagttcacgtagctcccagttggctttggct 398 |||| ||||| | |||||||| |||||| ||| | || |||||| ||| ||| |||| | Sbjct: 29066891 tgtcaagtcttgtgtattggaattggtctgagcttacatagctctcagatggtgttggtt 29066950 Query: 399 gtatcactttcagaccgttgttgtatgcaatgcgcttattgacttgtataggaacct 455 ||| ||||||| || ||||| || || || ||| |||| |||||||||||||||| Sbjct: 29066951 gtacaactttcaatccattgttatacgctatacgcctattcacttgtataggaacct 29067007 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 tcacatcgtgcatcttgatg 130 |||||||||||||||||||| Sbjct: 24699756 tcacatcgtgcatcttgatg 24699775
>dbj|AP003378.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0047E11 Length = 148109 Score = 93.7 bits (47), Expect = 7e-16 Identities = 59/63 (93%) Strand = Plus / Plus Query: 533 gcaagatacaatctagagtagtaagcatcatgcaccatttctgtaatccgcaccaaacgt 592 ||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 112208 gcaagatacaatcgagaatagtatgcatcatggaccatttctgtaatccgcaccaaacgt 112267 Query: 593 acc 595 ||| Sbjct: 112268 acc 112270 Score = 93.7 bits (47), Expect = 7e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 452 accttgcaccggaaagcaatgttgatggcatctgatggcttgagatcaaaactaataacc 511 ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct: 111801 accttacaccggaaagcaatgttgatggcatctgatggcttgagatctaagctaatagtc 111860 Query: 512 tcttcttcatt 522 || |||||||| Sbjct: 111861 tcctcttcatt 111871 Score = 89.7 bits (45), Expect = 1e-14 Identities = 51/53 (96%) Strand = Plus / Plus Query: 599 tatcccatcatttcggtcatctcctttaccacattataaattgttggccttgg 651 ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 112568 tatcccatcctttcggtcatctcctttaccacattataaatagttggccttgg 112620 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 246 cagcatctttataacgttcctcaacagcagcaacaagcatgccgcgcaccaaatcaaact 305 |||||||||| || ||||||||||||||||| || ||||| ||| ||||||||||||| Sbjct: 111072 cagcatctttgtagcgttcctcaacagcagcgaccagcatattgcggaccaaatcaaact 111131 Query: 306 cctgggcttcaaagcaagg 324 | ||||| ||||||||||| Sbjct: 111132 cttgggcctcaaagcaagg 111150 Score = 71.9 bits (36), Expect = 3e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 187 ctgttatatcgtgttctttttgtttgcccggaacatgagaaggcgatctctgtattgagc 246 |||||| ||| |||||||||| |||||||||||||||| ||| |||||||||||||||| Sbjct: 110751 ctgttaaatcatgttctttttctttgcccggaacatgaaaagctgatctctgtattgagc 110810 Score = 42.1 bits (21), Expect = 2.3 Identities = 93/117 (79%) Strand = Plus / Plus Query: 339 tgtccagtctcgcgtattggatttggtcagagttcacgtagctcccagttggctttggct 398 |||| ||||| | |||||||| |||||| ||| | || |||||| ||| ||| |||| | Sbjct: 111249 tgtcaagtcttgtgtattggaattggtctgagcttacatagctctcagatggtgttggtt 111308 Query: 399 gtatcactttcagaccgttgttgtatgcaatgcgcttattgacttgtataggaacct 455 ||| ||||||| || ||||| || || || ||| |||| |||||||||||||||| Sbjct: 111309 gtacaactttcaatccattgttatacgctatacgcctattcacttgtataggaacct 111365
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0421H07 Length = 158126 Score = 93.7 bits (47), Expect = 7e-16 Identities = 59/63 (93%) Strand = Plus / Plus Query: 533 gcaagatacaatctagagtagtaagcatcatgcaccatttctgtaatccgcaccaaacgt 592 ||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 28216 gcaagatacaatcgagaatagtatgcatcatggaccatttctgtaatccgcaccaaacgt 28275 Query: 593 acc 595 ||| Sbjct: 28276 acc 28278 Score = 93.7 bits (47), Expect = 7e-16 Identities = 65/71 (91%) Strand = Plus / Plus Query: 452 accttgcaccggaaagcaatgttgatggcatctgatggcttgagatcaaaactaataacc 511 ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| | Sbjct: 27809 accttacaccggaaagcaatgttgatggcatctgatggcttgagatctaagctaatagtc 27868 Query: 512 tcttcttcatt 522 || |||||||| Sbjct: 27869 tcctcttcatt 27879 Score = 89.7 bits (45), Expect = 1e-14 Identities = 51/53 (96%) Strand = Plus / Plus Query: 599 tatcccatcatttcggtcatctcctttaccacattataaattgttggccttgg 651 ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 28576 tatcccatcctttcggtcatctcctttaccacattataaatagttggccttgg 28628 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 246 cagcatctttataacgttcctcaacagcagcaacaagcatgccgcgcaccaaatcaaact 305 |||||||||| || ||||||||||||||||| || ||||| ||| ||||||||||||| Sbjct: 27080 cagcatctttgtagcgttcctcaacagcagcgaccagcatattgcggaccaaatcaaact 27139 Query: 306 cctgggcttcaaagcaagg 324 | ||||| ||||||||||| Sbjct: 27140 cttgggcctcaaagcaagg 27158 Score = 71.9 bits (36), Expect = 3e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 187 ctgttatatcgtgttctttttgtttgcccggaacatgagaaggcgatctctgtattgagc 246 |||||| ||| |||||||||| |||||||||||||||| ||| |||||||||||||||| Sbjct: 26759 ctgttaaatcatgttctttttctttgcccggaacatgaaaagctgatctctgtattgagc 26818 Score = 42.1 bits (21), Expect = 2.3 Identities = 93/117 (79%) Strand = Plus / Plus Query: 339 tgtccagtctcgcgtattggatttggtcagagttcacgtagctcccagttggctttggct 398 |||| ||||| | |||||||| |||||| ||| | || |||||| ||| ||| |||| | Sbjct: 27257 tgtcaagtcttgtgtattggaattggtctgagcttacatagctctcagatggtgttggtt 27316 Query: 399 gtatcactttcagaccgttgttgtatgcaatgcgcttattgacttgtataggaacct 455 ||| ||||||| || ||||| || || || ||| |||| |||||||||||||||| Sbjct: 27317 gtacaactttcaatccattgttatacgctatacgcctattcacttgtataggaacct 27373
>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence Length = 204120 Score = 81.8 bits (41), Expect = 3e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 452 accttgcaccggaaagcaatgttgatggcatctgatggcttgagatcaaaactaata 508 |||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct: 86510 accttgcaacggaaagcaatgttgatagcatccgatggcttgaggtcaaaactaata 86566 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 529 ctttgcaagatacaatctagagtagtaagcatcatgcaccatttctgtaatccgcaccaa 588 |||||||||||||| || ||| ||||| || ||||| ||||||||||||||||||||||| Sbjct: 86674 ctttgcaagatacagtcgagaatagtatgcgtcatggaccatttctgtaatccgcaccaa 86733 Query: 589 acg 591 ||| Sbjct: 86734 acg 86736
>ref|XM_481915.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1119 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 439 gacttgtataggaaccttgcaccggaaagcaatgttgatggcatctga 486 ||||||||||||||||||||| || | ||||||||| ||||||||||| Sbjct: 693 gacttgtataggaaccttgcagcgaacagcaatgtttatggcatctga 646
>ref|XM_481914.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1460 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 439 gacttgtataggaaccttgcaccggaaagcaatgttgatggcatctga 486 ||||||||||||||||||||| || | ||||||||| ||||||||||| Sbjct: 988 gacttgtataggaaccttgcagcgaacagcaatgtttatggcatctga 941
>ref|XM_507201.1| PREDICTED Oryza sativa (japonica cultivar-group), P0426E02.15-2 mRNA Length = 1525 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 439 gacttgtataggaaccttgcaccggaaagcaatgttgatggcatctga 486 ||||||||||||||||||||| || | ||||||||| ||||||||||| Sbjct: 968 gacttgtataggaaccttgcagcgaacagcaatgtttatggcatctga 921
>dbj|AK112035.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G04, full insert sequence Length = 1119 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 439 gacttgtataggaaccttgcaccggaaagcaatgttgatggcatctga 486 ||||||||||||||||||||| || | ||||||||| ||||||||||| Sbjct: 693 gacttgtataggaaccttgcagcgaacagcaatgtttatggcatctga 646
>dbj|AK105899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F07, full insert sequence Length = 1460 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 439 gacttgtataggaaccttgcaccggaaagcaatgttgatggcatctga 486 ||||||||||||||||||||| || | ||||||||| ||||||||||| Sbjct: 988 gacttgtataggaaccttgcagcgaacagcaatgtttatggcatctga 941
>dbj|AK070322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052C20, full insert sequence Length = 1525 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 439 gacttgtataggaaccttgcaccggaaagcaatgttgatggcatctga 486 ||||||||||||||||||||| || | ||||||||| ||||||||||| Sbjct: 968 gacttgtataggaaccttgcagcgaacagcaatgtttatggcatctga 921
>gb|AY106382.1| Zea mays PCO146928 mRNA sequence Length = 1474 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 439 gacttgtataggaaccttgcaccggaaagcaatgttgatggcatctga 486 |||||||| |||||||||||| || | ||||||||| ||||||||||| Sbjct: 955 gacttgtacaggaaccttgcaacgaacagcaatgtttatggcatctga 908
>emb|Z19058.1|GGCEK7A G.gallus Cek7 gene Length = 2396 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Minus Query: 136 cgaagcttctatttccttggcaaa 159 |||||||||||||||||||||||| Sbjct: 415 cgaagcttctatttccttggcaaa 392
>ref|NM_205105.1| Gallus gallus EPH receptor A5 (EPHA5), mRNA Length = 4124 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Minus Query: 136 cgaagcttctatttccttggcaaa 159 |||||||||||||||||||||||| Sbjct: 2031 cgaagcttctatttccttggcaaa 2008
>gb|U03910.1|GGCEK7B Gallus gallus receptor-type protein-tyrosine kinase precursor (Cek7) mRNA, complete cds Length = 4124 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Minus Query: 136 cgaagcttctatttccttggcaaa 159 |||||||||||||||||||||||| Sbjct: 2031 cgaagcttctatttccttggcaaa 2008
>gb|DQ167205.1| Zea mays putative wound responsive protein mRNA, complete cds Length = 717 Score = 46.1 bits (23), Expect = 0.15 Identities = 35/39 (89%) Strand = Plus / Minus Query: 448 aggaaccttgcaccggaaagcaatgttgatggcatctga 486 |||||||||||| || | ||||||||| ||||||||||| Sbjct: 702 aggaaccttgcaacgaacagcaatgtttatggcatctga 664
>emb|AL390965.15| Human DNA sequence from clone RP11-640E11 on chromosome 13 Contains a solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 (SLC25A5) pseudogene, complete sequence Length = 92179 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 65 aaagaggaaaaatattaaaagt 86 |||||||||||||||||||||| Sbjct: 66954 aaagaggaaaaatattaaaagt 66975
>dbj|AB009885.1| Nicotiana tabacum wound inducive mRNA , complete cds Length = 1525 Score = 44.1 bits (22), Expect = 0.58 Identities = 43/50 (86%) Strand = Plus / Minus Query: 434 ttattgacttgtataggaaccttgcaccggaaagcaatgttgatggcatc 483 |||||||||||||| || |||||||| | | |||||||||||| ||||| Sbjct: 959 ttattgacttgtattggcaccttgcattgcacagcaatgttgatcgcatc 910
>gb|AC122910.5| Mus musculus BAC clone RP23-54P3 from chromosome 6, complete sequence Length = 221390 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 tcaaagaggaaaaatattaaa 83 ||||||||||||||||||||| Sbjct: 102072 tcaaagaggaaaaatattaaa 102092
>gb|AC114574.8| Mus musculus chromosome 6, clone RP23-151F20, complete sequence Length = 252723 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 500 aaactaataacctcttcttcatttc 524 ||||| ||||||||||||||||||| Sbjct: 226520 aaacttataacctcttcttcatttc 226544
>emb|AL365500.9| Human DNA sequence from clone RP11-232C13 on chromosome 10 Contains the 5' end of a novel gene, complete sequence Length = 153558 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 aaatcaaactcctgggcttca 316 ||||||||||||||||||||| Sbjct: 33374 aaatcaaactcctgggcttca 33354
>gb|AC164097.2| Mus musculus BAC clone RP23-141F18 from chromosome 16, complete sequence Length = 217725 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 109 attcacatcgtgcatcttgatgttt 133 |||||||| |||||||||||||||| Sbjct: 183194 attcacatagtgcatcttgatgttt 183170
>gb|AC153155.6| Mus musculus BAC clone RP23-25J23 from chromosome 18, complete sequence Length = 227880 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 aggaaaaatattaaaagttac 89 ||||||||||||||||||||| Sbjct: 192259 aggaaaaatattaaaagttac 192279
>gb|AC154705.2| Mus musculus BAC clone RP23-131F11 from chromosome 16, complete sequence Length = 177886 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 109 attcacatcgtgcatcttgatgttt 133 |||||||| |||||||||||||||| Sbjct: 144886 attcacatagtgcatcttgatgttt 144910
>emb|AL110292.4|CNS018P1 Human chromosome 14 DNA sequence BAC R-384J4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177427 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tcaaactcctgggcttcaaag 319 ||||||||||||||||||||| Sbjct: 122902 tcaaactcctgggcttcaaag 122882
>gb|AC154019.3| Mus musculus 6 BAC RP24-374A6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 169229 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 500 aaactaataacctcttcttcatttc 524 ||||| ||||||||||||||||||| Sbjct: 145706 aaacttataacctcttcttcatttc 145682
>gb|AC148011.3| Mus musculus BAC clone RP23-202I21 from 18, complete sequence Length = 220253 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 aggaaaaatattaaaagttac 89 ||||||||||||||||||||| Sbjct: 103106 aggaaaaatattaaaagttac 103086
>ref|NM_192832.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 525 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 tcacatcgtgcatcttgatg 130 |||||||||||||||||||| Sbjct: 472 tcacatcgtgcatcttgatg 453
>ref|XM_476518.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2283 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 tggctgtatcactttcagac 413 |||||||||||||||||||| Sbjct: 77 tggctgtatcactttcagac 96
>gb|AC154442.3| Mus musculus BAC clone RP24-178L2 from chromosome 17, complete sequence Length = 177231 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gcttctatttccttggcaaa 159 |||||||||||||||||||| Sbjct: 148627 gcttctatttccttggcaaa 148646
>gb|AC153900.8| Mus musculus 6 BAC RP23-36I21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194216 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 aggaaaaatattaaaagtta 88 |||||||||||||||||||| Sbjct: 99072 aggaaaaatattaaaagtta 99053
>gb|AC133890.16| Mus musculus chromosome 10, clone RP23-339N24, complete sequence Length = 211758 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aaagaggaaaaatattaaaa 84 |||||||||||||||||||| Sbjct: 29364 aaagaggaaaaatattaaaa 29345
>gb|AC118689.16| Mus musculus chromosome 10, clone RP23-293N21, complete sequence Length = 163917 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aaagaggaaaaatattaaaa 84 |||||||||||||||||||| Sbjct: 115713 aaagaggaaaaatattaaaa 115694
>gb|AC002394.1|HUAC002394 Human Chromosome 16 BAC clone CIT987SK-A-211C6, complete sequence Length = 107910 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 gaaaaatattaaaagttaca 90 |||||||||||||||||||| Sbjct: 53891 gaaaaatattaaaagttaca 53872
>gb|U91324.1|HUU91324 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-100B4 ~complete genomic sequence, complete sequence Length = 174826 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 ctcttcttcatttccagtct 530 |||||||||||||||||||| Sbjct: 45140 ctcttcttcatttccagtct 45159
>gb|AC102429.11| Mus musculus chromosome 18, clone RP24-93K11, complete sequence Length = 216331 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 cccagttggctttggctgta 401 |||||||||||||||||||| Sbjct: 50683 cccagttggctttggctgta 50664
>gb|AY058645.1| Drosophila melanogaster LD34489 full insert cDNA Length = 3313 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cactatgtacacccccatct 182 |||||||||||||||||||| Sbjct: 2081 cactatgtacacccccatct 2062
>emb|AL022477.1|HS172K10 Human DNA sequence from clone RP1-172K10 on chromosome 6q24, complete sequence Length = 82073 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aaagaggaaaaatattaaaa 84 |||||||||||||||||||| Sbjct: 79770 aaagaggaaaaatattaaaa 79751
>gb|AC125280.1| Homo sapiens chromosome 4 clone RP13-836O24, complete sequence Length = 36810 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 aggaaaaatattaaaagtta 88 |||||||||||||||||||| Sbjct: 17385 aggaaaaatattaaaagtta 17404
>dbj|AK095936.1| Homo sapiens cDNA FLJ38617 fis, clone HEART2007231 Length = 2183 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ccaaatcaaactcctgggct 313 |||||||||||||||||||| Sbjct: 1423 ccaaatcaaactcctgggct 1442
>gb|AY274933.1| Pisum sativum Stp-h4 gene, complete cds Length = 1681 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ctcaacagcagcaacaagca 284 |||||||||||||||||||| Sbjct: 1236 ctcaacagcagcaacaagca 1217
>gb|AY274932.1| Pisum sativum Stp-h3 gene, complete cds Length = 1677 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ctcaacagcagcaacaagca 284 |||||||||||||||||||| Sbjct: 1232 ctcaacagcagcaacaagca 1213
>gb|AY274931.1| Pisum sativum Stp-h2 gene, complete cds Length = 1677 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ctcaacagcagcaacaagca 284 |||||||||||||||||||| Sbjct: 1232 ctcaacagcagcaacaagca 1213
>gb|AY274930.1| Pisum sativum Stp-h1 pseudogene, complete sequence Length = 1683 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 ctcaacagcagcaacaagca 284 |||||||||||||||||||| Sbjct: 1238 ctcaacagcagcaacaagca 1219
>ref|NM_166690.1| Drosophila melanogaster CG30420-RA, transcript variant A (Atf-2), mRNA Length = 3274 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cactatgtacacccccatct 182 |||||||||||||||||||| Sbjct: 2081 cactatgtacacccccatct 2062
>ref|NM_138130.2| Drosophila melanogaster CG30420-RB, transcript variant B (Atf-2), mRNA Length = 2685 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cactatgtacacccccatct 182 |||||||||||||||||||| Sbjct: 1492 cactatgtacacccccatct 1473
>gb|AC098480.2| Homo sapiens chromosome 3 clone RP11-149J4, complete sequence Length = 188681 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 aatattaaaagttacagtcattag 98 |||| ||||||||||||||||||| Sbjct: 46372 aataataaaagttacagtcattag 46349
>gb|AC011366.6| Homo sapiens chromosome 5 clone CTC-568L21, complete sequence Length = 177954 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 gtattgagcagcatctttat 257 |||||||||||||||||||| Sbjct: 175219 gtattgagcagcatctttat 175200
>gb|AC105410.1| Homo sapiens chromosome 16 clone CTD-2348G11, complete sequence Length = 133838 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 gaaaaatattaaaagttaca 90 |||||||||||||||||||| Sbjct: 2721 gaaaaatattaaaagttaca 2702
>gb|AY060248.1| Drosophila melanogaster GH07217 full length cDNA Length = 4583 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cactatgtacacccccatct 182 |||||||||||||||||||| Sbjct: 2383 cactatgtacacccccatct 2364
>gb|AC025261.27|AC025261 Homo sapiens 12 BAC RP11-850P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 108801 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 aagaggaaaaatattaaaag 85 |||||||||||||||||||| Sbjct: 5193 aagaggaaaaatattaaaag 5174
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 atcgtgttctttttgtttgc 213 |||||||||||||||||||| Sbjct: 475922 atcgtgttctttttgtttgc 475941
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 tggctgtatcactttcagac 413 |||||||||||||||||||| Sbjct: 1648320 tggctgtatcactttcagac 1648301
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 atcgtgttctttttgtttgc 213 |||||||||||||||||||| Sbjct: 14432368 atcgtgttctttttgtttgc 14432387
>gb|AC007884.5|AC007884 Drosophila melanogaster, chromosome 2R, region 60F-60F, BAC clone BACR08I14, complete sequence Length = 190616 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cactatgtacacccccatct 182 |||||||||||||||||||| Sbjct: 39332 cactatgtacacccccatct 39313
>gb|AC108014.4| Homo sapiens BAC clone RP13-836O24 from 4, complete sequence Length = 36810 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 aggaaaaatattaaaagtta 88 |||||||||||||||||||| Sbjct: 17385 aggaaaaatattaaaagtta 17404
>gb|AC007464.4| Homo sapiens BAC clone RP11-542B5 from 2, complete sequence Length = 186187 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 ctcttcttcatttccagtct 530 |||||||||||||||||||| Sbjct: 170210 ctcttcttcatttccagtct 170229
>gb|AY254046.1| Homo sapiens caspase 6, apoptosis-related cysteine protease (CASP6) gene, complete cds Length = 17719 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 ccaaatcaaactcctgggct 313 |||||||||||||||||||| Sbjct: 16656 ccaaatcaaactcctgggct 16637
>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1040D09 Length = 148102 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 tcacatcgtgcatcttgatg 130 |||||||||||||||||||| Sbjct: 125719 tcacatcgtgcatcttgatg 125738
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 ggctggtcgccgggcttgtc 342 |||||||||||||||||||| Sbjct: 5201862 ggctggtcgccgggcttgtc 5201881
>gb|AC008417.3|AC008417 Homo sapiens chromosome 5 clone CTC-287O8, complete sequence Length = 216067 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gtattgagcagcatctttat 257 |||||||||||||||||||| Sbjct: 174857 gtattgagcagcatctttat 174876
>dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0407B12 Length = 148762 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 tcacatcgtgcatcttgatg 130 |||||||||||||||||||| Sbjct: 68333 tcacatcgtgcatcttgatg 68352
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 464 aaagcaatgttgatggcatc 483 |||||||||||||||||||| Sbjct: 2100949 aaagcaatgttgatggcatc 2100930
>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021M10 Length = 163416 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 atcgtgttctttttgtttgc 213 |||||||||||||||||||| Sbjct: 25542 atcgtgttctttttgtttgc 25561
>dbj|AP006172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0088O14 Length = 179483 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 tggctgtatcactttcagac 413 |||||||||||||||||||| Sbjct: 116975 tggctgtatcactttcagac 116956
>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0007D08 Length = 183142 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 atcgtgttctttttgtttgc 213 |||||||||||||||||||| Sbjct: 65882 atcgtgttctttttgtttgc 65901
>gb|AC018725.1|AC018725 Homo sapiens chromosome 19, cosmid F22273, complete sequence Length = 38015 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 aatcaaactcctgggcttca 316 |||||||||||||||||||| Sbjct: 28333 aatcaaactcctgggcttca 28352
>emb|CT737352.3| Human DNA sequence from clone XX-HCC1954_35H21, complete sequence Length = 158492 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gtattgagcagcatctttat 257 |||||||||||||||||||| Sbjct: 24481 gtattgagcagcatctttat 24500
>emb|AL355773.4|CNS05TCO Human chromosome 14 DNA sequence BAC R-813I20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 216647 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 cctgggcttcaaagcaaggc 325 |||||||||||||||||||| Sbjct: 7587 cctgggcttcaaagcaaggc 7606
>emb|AL358334.3|CNS05TE5 Human chromosome 14 DNA sequence BAC R-218E20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 174793 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 aaaaatattaaaagttacag 91 |||||||||||||||||||| Sbjct: 96291 aaaaatattaaaagttacag 96272
>emb|AL163952.5|CNS05TBP Human chromosome 14 DNA sequence BAC R-1012E15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 196514 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 cctgggcttcaaagcaaggc 325 |||||||||||||||||||| Sbjct: 194330 cctgggcttcaaagcaaggc 194349
>gb|AE003465.3| Drosophila melanogaster chromosome 2R, section 72 of 73 of the complete sequence Length = 343833 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 cactatgtacacccccatct 182 |||||||||||||||||||| Sbjct: 191636 cactatgtacacccccatct 191617
>gb|AC006213.1|AC006213 Homo sapiens, clone hRPK.15_A_1, complete sequence Length = 160754 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 aatcaaactcctgggcttca 316 |||||||||||||||||||| Sbjct: 8809 aatcaaactcctgggcttca 8790
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 agcttctatttccttggcaa 158 |||||||||||||||||||| Sbjct: 1016680 agcttctatttccttggcaa 1016661
>dbj|AP004301.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0483E09 Length = 69300 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 tggctgtatcactttcagac 413 |||||||||||||||||||| Sbjct: 57473 tggctgtatcactttcagac 57454
>gb|AC004067.1|AC004067 Homo sapiens chromosome 4 clone B366O24 map 4q25, complete sequence Length = 161326 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 ccaaatcaaactcctgggct 313 |||||||||||||||||||| Sbjct: 115482 ccaaatcaaactcctgggct 115501
>emb|CT033749.8| Mouse DNA sequence from clone RP23-14N10 on chromosome 17, complete sequence Length = 212052 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gcttctatttccttggcaaa 159 |||||||||||||||||||| Sbjct: 90471 gcttctatttccttggcaaa 90490
>gb|AC109464.2| Homo sapiens chromosome 5 clone RP11-284A20, complete sequence Length = 161641 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 acatgtcttcaaagaggaaaaata 78 |||||||||| ||||||||||||| Sbjct: 87815 acatgtcttccaagaggaaaaata 87838 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,839,197 Number of Sequences: 3902068 Number of extensions: 6839197 Number of successful extensions: 185950 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 185442 Number of HSP's gapped (non-prelim): 508 length of query: 668 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 645 effective length of database: 17,143,297,704 effective search space: 11057427019080 effective search space used: 11057427019080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)