Clone Information

BLAST Search Result

Clone Name	rbasd19p21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_196959.1\| Oryza sativa (japonica cultivar-group) putative...	141	3e-30
2	dbj\|AK100751.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	141	3e-30
3	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	92	3e-15
4	gb\|AC026815.8\|AC026815 Oryza sativa chromosome 10 BAC OSJNBa0079...	92	3e-15
5	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	92	3e-15
6	gb\|AY110258.1\| Zea mays CL3929_1 mRNA sequence	76	2e-10
7	gb\|AF143746.1\|AF143746 Oryza sativa CER1 (CER1) mRNA, complete cds	66	2e-07
8	ref\|XM_468372.1\| Oryza sativa (japonica cultivar-group), mRNA	58	4e-05
9	dbj\|AK104915.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	4e-05
10	dbj\|AK068166.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	4e-05
11	gb\|AY108740.1\| Zea mays PCO118291 mRNA sequence	54	6e-04
12	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.010
13	dbj\|AP005691.3\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.010
14	dbj\|AP004120.3\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.010
15	ref\|XM_466799.1\| Oryza sativa (japonica cultivar-group), mRNA	48	0.038
16	dbj\|AK066386.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.038
17	gb\|AC166253.18\| Mus musculus BAC RP23-231M6 (Roswell Park Cance...	42	2.4
18	gb\|AC008228.5\| Drosophila melanogaster clone BACR23E23, complete...	42	2.4
19	gb\|AC010123.9\| Drosophila melanogaster clone BACR35O22, complete...	42	2.4
20	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.4
21	dbj\|AP005465.5\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.4
22	gb\|AE003587.4\| Drosophila melanogaster chromosome 2L, section 4 ...	42	2.4
23	gb\|AC132304.3\| Mus musculus BAC clone RP24-284M17 from 10, compl...	42	2.4
24	emb\|AL928546.5\| Mouse DNA sequence from clone RP23-412C22 on chr...	42	2.4
25	emb\|AL591222.2\|HS378I6 Homo sapiens chromosome 9 BAC RP11-378I6,...	42	2.4
26	gb\|AE017127.1\| Yersinia pestis biovar Medievalis str. 91001 sect...	40	9.4
27	gb\|AE009952.1\| Yersinia pestis KIM, complete genome	40	9.4
28	emb\|AL139794.3\|LMFLCHR4B Leishmania major Friedlin chromosome 4,...	40	9.4
29	emb\|AL136311.7\| Human DNA sequence from clone RP3-417I1 on chrom...	40	9.4
30	emb\|CR628337.1\| Legionella pneumophila str. Lens complete genome	40	9.4
31	emb\|BX936398.1\| Yersinia pseudotuberculosis IP32953 genome, comp...	40	9.4
32	gb\|AC159645.2\| Mus musculus BAC clone RP23-242E11 from chromosom...	40	9.4
33	emb\|AL592102.1\|LISINP100 Listeria innocua plasmid pLI100, comple...	40	9.4
34	emb\|AJ414141.1\| Yersinia pestis strain CO92 complete genome; seg...	40	9.4
35	gb\|AE012256.1\| Xanthomonas campestris pv. campestris str. ATCC 3...	40	9.4
36	gb\|AC087189.3\| Homo sapiens chromosome 16 clone RP11-43L5, compl...	40	9.4
37	gb\|AC159625.2\| Mus musculus BAC clone RP24-262L7 from chromosome...	40	9.4
38	gb\|CP000050.1\| Xanthomonas campestris pv. campestris str. 8004, ...	40	9.4
39	gb\|AC009154.5\| Homo sapiens chromosome 16 clone RP11-58A18, comp...	40	9.4
40	emb\|BX322785.6\| Zebrafish DNA sequence from clone DKEYP-78B1 in ...	40	9.4
41	dbj\|AP004307.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.4
42	emb\|AL954147.12\| Zebrafish DNA sequence from clone CH211-117H23 ...	40	9.4
43	gb\|AC115017.11\| Mus musculus chromosome 3, clone RP24-220A11, co...	40	9.4
44	gb\|U15554.2\|LMU15554 Listeria monocytogenes strain DRDC8 plasmid...	40	9.4

>ref|NM_196959.1| Oryza sativa (japonica cultivar-group) putative CER1
            (OSJNBa0079L16.17), mRNA
          Length = 2195

 Score =  141 bits (71), Expect = 3e-30
 Identities = 224/275 (81%)
 Strand = Plus / Minus

                                                                        
Query: 261  catcaaacttgggcaacagggcggaacccatgcataattgcagcagaccatactttctcc 320
            |||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| |||
Sbjct: 1956 catcaaccttgagcaactgggcagaacccatgcataattgcagcagaccaaactttgtcc 1897

                                                                        
Query: 321  aggcccagcactgtgtctccgcactcatcttcgctccacccctccaatgcatgaacaatt 380
            |   | |||||  |||| || || ||||  ||  |||| |||||||| ||||||| ||||
Sbjct: 1896 atatcaagcaccttgtcaccacattcatgctcattccatccctccaacgcatgaagaatt 1837

                                                                        
Query: 381  ccagcgacgcgccacgcgctcatcaccttcctcggaagccaattctcgcacgagtgcacg 440
            || ||||  ||||| |||||||| ||| |||| || |||||||||||||| || ||||| 
Sbjct: 1836 cccgcgattcgccatgcgctcataaccctccttggcagccaattctcgcatgaatgcaca 1777

                                                                        
Query: 441  ttttgcattgattcaggtacacccattgcaggagtcatcgcataggtgcagcagtccttg 500
            || ||||  | ||  |||||| |||||||||||||  |||  ||| |||||| |||||||
Sbjct: 1776 ttctgcagcgtttttggtacagccattgcaggagttgtcgagtagctgcagctgtccttg 1717

                                               
Query: 501  cgtgccatctttggcgggaactgcgagtatgggat 535
            ||| |||||||||| || || || |||||||||||
Sbjct: 1716 cgtaccatctttggaggaaattgtgagtatgggat 1682

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>dbj|AK100751.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118L15, full
            insert sequence
          Length = 2339

 Score =  141 bits (71), Expect = 3e-30
 Identities = 224/275 (81%)
 Strand = Plus / Minus

                                                                        
Query: 261  catcaaacttgggcaacagggcggaacccatgcataattgcagcagaccatactttctcc 320
            |||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| |||
Sbjct: 2054 catcaaccttgagcaactgggcagaacccatgcataattgcagcagaccaaactttgtcc 1995

                                                                        
Query: 321  aggcccagcactgtgtctccgcactcatcttcgctccacccctccaatgcatgaacaatt 380
            |   | |||||  |||| || || ||||  ||  |||| |||||||| ||||||| ||||
Sbjct: 1994 atatcaagcaccttgtcaccacattcatgctcattccatccctccaacgcatgaagaatt 1935

                                                                        
Query: 381  ccagcgacgcgccacgcgctcatcaccttcctcggaagccaattctcgcacgagtgcacg 440
            || ||||  ||||| |||||||| ||| |||| || |||||||||||||| || ||||| 
Sbjct: 1934 cccgcgattcgccatgcgctcataaccctccttggcagccaattctcgcatgaatgcaca 1875

                                                                        
Query: 441  ttttgcattgattcaggtacacccattgcaggagtcatcgcataggtgcagcagtccttg 500
            || ||||  | ||  |||||| |||||||||||||  |||  ||| |||||| |||||||
Sbjct: 1874 ttctgcagcgtttttggtacagccattgcaggagttgtcgagtagctgcagctgtccttg 1815

                                               
Query: 501  cgtgccatctttggcgggaactgcgagtatgggat 535
            ||| |||||||||| || || || |||||||||||
Sbjct: 1814 cgtaccatctttggaggaaattgtgagtatgggat 1780

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 136/166 (81%)
 Strand = Plus / Plus

                                                                            
Query: 261      catcaaacttgggcaacagggcggaacccatgcataattgcagcagaccatactttctcc 320
                |||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| |||
Sbjct: 16934315 catcaaccttgagcaactgggcagaacccatgcataattgcagcagaccaaactttgtcc 16934374

                                                                            
Query: 321      aggcccagcactgtgtctccgcactcatcttcgctccacccctccaatgcatgaacaatt 380
                |   | |||||  |||| || || ||||  ||  |||| |||||||| ||||||| ||||
Sbjct: 16934375 atatcaagcaccttgtcaccacattcatgctcattccatccctccaacgcatgaagaatt 16934434

                                                              
Query: 381      ccagcgacgcgccacgcgctcatcaccttcctcggaagccaattct 426
                || ||||  ||||| |||||||| ||| |||| || ||||||||||
Sbjct: 16934435 cccgcgattcgccatgcgctcataaccctccttggcagccaattct 16934480



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                            
Query: 456      ggtacacccattgcaggagtcatcgcataggtgcagcagtccttgcgtgccatctttggc 515
                |||||| |||||||||||||  |||  ||| |||||| |||||||||| |||||||||| 
Sbjct: 16934600 ggtacagccattgcaggagttgtcgagtagctgcagctgtccttgcgtaccatctttgga 16934659

                                    
Query: 516      gggaactgcgagtatgggat 535
                || || || |||||||||||
Sbjct: 16934660 ggaaattgtgagtatgggat 16934679



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 62/76 (81%)
 Strand = Plus / Plus

                                                                            
Query: 463      ccattgcaggagtcatcgcataggtgcagcagtccttgcgtgccatctttggcgggaact 522
                |||||||||||||| ||   |||||||||||||  ||||||  |||  | || || ||||
Sbjct: 16929420 ccattgcaggagtcgtccagtaggtgcagcagttgttgcgtatcattctcggtggaaact 16929479

                                
Query: 523      gcgagtatgggatgaa 538
                | ||||||||||||||
Sbjct: 16929480 gtgagtatgggatgaa 16929495

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>gb|AC026815.8|AC026815 Oryza sativa chromosome 10 BAC OSJNBa0079L16 genomic sequence, complete
              sequence
          Length = 147452

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 136/166 (81%)
 Strand = Plus / Plus

                                                                          
Query: 261    catcaaacttgggcaacagggcggaacccatgcataattgcagcagaccatactttctcc 320
              |||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| |||
Sbjct: 118767 catcaaccttgagcaactgggcagaacccatgcataattgcagcagaccaaactttgtcc 118826

                                                                          
Query: 321    aggcccagcactgtgtctccgcactcatcttcgctccacccctccaatgcatgaacaatt 380
              |   | |||||  |||| || || ||||  ||  |||| |||||||| ||||||| ||||
Sbjct: 118827 atatcaagcaccttgtcaccacattcatgctcattccatccctccaacgcatgaagaatt 118886

                                                            
Query: 381    ccagcgacgcgccacgcgctcatcaccttcctcggaagccaattct 426
              || ||||  ||||| |||||||| ||| |||| || ||||||||||
Sbjct: 118887 cccgcgattcgccatgcgctcataaccctccttggcagccaattct 118932



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                          
Query: 456    ggtacacccattgcaggagtcatcgcataggtgcagcagtccttgcgtgccatctttggc 515
              |||||| |||||||||||||  |||  ||| |||||| |||||||||| |||||||||| 
Sbjct: 119052 ggtacagccattgcaggagttgtcgagtagctgcagctgtccttgcgtaccatctttgga 119111

                                  
Query: 516    gggaactgcgagtatgggat 535
              || || || |||||||||||
Sbjct: 119112 ggaaattgtgagtatgggat 119131



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 62/76 (81%)
 Strand = Plus / Plus

                                                                          
Query: 463    ccattgcaggagtcatcgcataggtgcagcagtccttgcgtgccatctttggcgggaact 522
              |||||||||||||| ||   |||||||||||||  ||||||  |||  | || || ||||
Sbjct: 113872 ccattgcaggagtcgtccagtaggtgcagcagttgttgcgtatcattctcggtggaaact 113931

                              
Query: 523    gcgagtatgggatgaa 538
              | ||||||||||||||
Sbjct: 113932 gtgagtatgggatgaa 113947

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 136/166 (81%)
 Strand = Plus / Plus

                                                                            
Query: 261      catcaaacttgggcaacagggcggaacccatgcataattgcagcagaccatactttctcc 320
                |||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| |||
Sbjct: 16943355 catcaaccttgagcaactgggcagaacccatgcataattgcagcagaccaaactttgtcc 16943414

                                                                            
Query: 321      aggcccagcactgtgtctccgcactcatcttcgctccacccctccaatgcatgaacaatt 380
                |   | |||||  |||| || || ||||  ||  |||| |||||||| ||||||| ||||
Sbjct: 16943415 atatcaagcaccttgtcaccacattcatgctcattccatccctccaacgcatgaagaatt 16943474

                                                              
Query: 381      ccagcgacgcgccacgcgctcatcaccttcctcggaagccaattct 426
                || ||||  ||||| |||||||| ||| |||| || ||||||||||
Sbjct: 16943475 cccgcgattcgccatgcgctcataaccctccttggcagccaattct 16943520



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                            
Query: 456      ggtacacccattgcaggagtcatcgcataggtgcagcagtccttgcgtgccatctttggc 515
                |||||| |||||||||||||  |||  ||| |||||| |||||||||| |||||||||| 
Sbjct: 16943640 ggtacagccattgcaggagttgtcgagtagctgcagctgtccttgcgtaccatctttgga 16943699

                                    
Query: 516      gggaactgcgagtatgggat 535
                || || || |||||||||||
Sbjct: 16943700 ggaaattgtgagtatgggat 16943719



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 62/76 (81%)
 Strand = Plus / Plus

                                                                            
Query: 463      ccattgcaggagtcatcgcataggtgcagcagtccttgcgtgccatctttggcgggaact 522
                |||||||||||||| ||   |||||||||||||  ||||||  |||  | || || ||||
Sbjct: 16938460 ccattgcaggagtcgtccagtaggtgcagcagttgttgcgtatcattctcggtggaaact 16938519

                                
Query: 523      gcgagtatgggatgaa 538
                | ||||||||||||||
Sbjct: 16938520 gtgagtatgggatgaa 16938535

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>gb|AY110258.1| Zea mays CL3929_1 mRNA sequence
          Length = 1304

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 155/194 (79%)
 Strand = Plus / Minus

                                                                       
Query: 417 agccaattctcgcacgagtgcacgttttgcattgattcaggtacacccattgcaggagtc 476
           ||||||||||| || |||||||| || || | || || ||||||| ||||||||||||| 
Sbjct: 600 agccaattctcacaggagtgcacattctgtagtgttttaggtacaaccattgcaggagtt 541

                                                                       
Query: 477 atcgcataggtgcagcagtccttgcgtgccatctttggcgggaactgcgagtatgggatg 536
            |||  |||||||||  |||||||||||||||  |||| || | ||| || |||||||| 
Sbjct: 540 gtcgagtaggtgcaggtgtccttgcgtgccattcttggtggaagctgtgaatatgggata 481

                                                                       
Query: 537 aactttgttccttgcggtgccctcgactgttcaggagcatccagaccttctccaatgagc 596
           ||||  || |||| | ||||| |  |||| |||| |||||| ||||| || ||||| | |
Sbjct: 480 aactgggtccctttctgtgccttaaactgctcagaagcatctagaccatccccaattaac 421

                         
Query: 597 cacacctctgcagt 610
           ||||||| ||||||
Sbjct: 420 cacacctttgcagt 407

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>gb|AF143746.1|AF143746 Oryza sativa CER1 (CER1) mRNA, complete cds
          Length = 2211

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 139/173 (80%), Gaps = 1/173 (0%)
 Strand = Plus / Minus

                                                                        
Query: 364  ccaatgcatgaacaattccagcgacgcgccacgcgctcatcaccttcctcggaagccaat 423
            |||| ||||||| |||||| || |  ||||| |||| ||| ||| |||| || |||||||
Sbjct: 1847 ccaacgcatgaagaattcccgccattcgccatgcgcccataaccctccttggcagccaat 1788

                                                                        
Query: 424  tctcgcacgagtgcacgttttgcattgattcaggtacaccca-ttgcaggagtcatcgca 482
            ||||||| || ||||| || ||||  | ||  |||||| ||| ||||||||||  |||  
Sbjct: 1787 tctcgcatgaatgcacattctgcagcgtttttggtacagccaattgcaggagttgtcgag 1728

                                                                 
Query: 483  taggtgcagcagtccttgcgtgccatctttggcgggaactgcgagtatgggat 535
            ||| |||||| |||||||||| |||||||||| || || || |||||||||||
Sbjct: 1727 tagctgcagctgtccttgcgtaccatctttggaggaaattgtgagtatgggat 1675

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>ref|XM_468372.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2219

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 390  cgccacgcgctcatcaccttcctcggaagccaattctcgca 430
            |||||||||||||||||| ||||||| | ||||||||||||
Sbjct: 1839 cgccacgcgctcatcaccctcctcggcaaccaattctcgca 1799

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>dbj|AK104915.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E01, full
           insert sequence
          Length = 659

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 390 cgccacgcgctcatcaccttcctcggaagccaattctcgca 430
           |||||||||||||||||| ||||||| | ||||||||||||
Sbjct: 297 cgccacgcgctcatcaccctcctcggcaaccaattctcgca 257

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>dbj|AK068166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134I09, full
            insert sequence
          Length = 2219

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 390  cgccacgcgctcatcaccttcctcggaagccaattctcgca 430
            |||||||||||||||||| ||||||| | ||||||||||||
Sbjct: 1839 cgccacgcgctcatcaccctcctcggcaaccaattctcgca 1799

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>gb|AY108740.1| Zea mays PCO118291 mRNA sequence
          Length = 967

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 388 cgcgccacgcgctcatcaccttcctcggaagccaattctcgca 430
           |||||||||||||||||||| ||| ||| ||||| ||||||||
Sbjct: 672 cgcgccacgcgctcatcaccctccgcggcagccagttctcgca 630

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 390      cgccacgcgctcatcaccttcctcggaagccaattct 426
                |||||||||||||||||| ||||||| | ||||||||
Sbjct: 34908548 cgccacgcgctcatcaccctcctcggcaaccaattct 34908584

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>dbj|AP005691.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0053L11
          Length = 147123

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                   
Query: 390    cgccacgcgctcatcaccttcctcggaagccaattct 426
              |||||||||||||||||| ||||||| | ||||||||
Sbjct: 130143 cgccacgcgctcatcaccctcctcggcaaccaattct 130179

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>dbj|AP004120.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1293_E04
          Length = 118192

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 390   cgccacgcgctcatcaccttcctcggaagccaattct 426
             |||||||||||||||||| ||||||| | ||||||||
Sbjct: 68045 cgccacgcgctcatcaccctcctcggcaaccaattct 68081

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>ref|XM_466799.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2481

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 369  gcatgaacaattccagcgacgcgccacgcgctcatcaccttcctcggaagccaattctcg 428
            |||||||  |||||||| | | |||| || ||||||||| | || |||||||||||||||
Sbjct: 1862 gcatgaagtattccagcaatgtgccaagcactcatcacccttcttggaagccaattctcg 1803

                    
Query: 429  cacgagtg 436
            || |||||
Sbjct: 1802 caggagtg 1795

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>dbj|AK066386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066F17, full
            insert sequence
          Length = 2481

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 369  gcatgaacaattccagcgacgcgccacgcgctcatcaccttcctcggaagccaattctcg 428
            |||||||  |||||||| | | |||| || ||||||||| | || |||||||||||||||
Sbjct: 1862 gcatgaagtattccagcaatgtgccaagcactcatcacccttcttggaagccaattctcg 1803

                    
Query: 429  cacgagtg 436
            || |||||
Sbjct: 1802 caggagtg 1795

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>gb|AC166253.18| Mus musculus  BAC RP23-231M6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 207999

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 586   ctccaatgagccacacctctg 606
             |||||||||||||||||||||
Sbjct: 98317 ctccaatgagccacacctctg 98297

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>gb|AC008228.5| Drosophila melanogaster clone BACR23E23, complete sequence
          Length = 162949

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 284    gaacccatgcataattgcagc 304
              |||||||||||||||||||||
Sbjct: 154213 gaacccatgcataattgcagc 154233

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>gb|AC010123.9| Drosophila melanogaster clone BACR35O22, complete sequence
          Length = 160444

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 284    gaacccatgcataattgcagc 304
              |||||||||||||||||||||
Sbjct: 100300 gaacccatgcataattgcagc 100320

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 395      cgcgctcatcaccttcctcgg 415
                |||||||||||||||||||||
Sbjct: 17652422 cgcgctcatcaccttcctcgg 17652402



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 131     atcataacagatcaaactac 150
               ||||||||||||||||||||
Sbjct: 4056626 atcataacagatcaaactac 4056607

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>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_F08
          Length = 134988

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 395   cgcgctcatcaccttcctcgg 415
             |||||||||||||||||||||
Sbjct: 56455 cgcgctcatcaccttcctcgg 56435

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>gb|AE003587.4| Drosophila melanogaster chromosome 2L, section 4 of 83 of the complete
              sequence
          Length = 314549

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 284    gaacccatgcataattgcagc 304
              |||||||||||||||||||||
Sbjct: 166568 gaacccatgcataattgcagc 166588

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>gb|AC132304.3| Mus musculus BAC clone RP24-284M17 from 10, complete sequence
          Length = 191906

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   tgtgccttttctcccacatag 204
             |||||||||||||||||||||
Sbjct: 25841 tgtgccttttctcccacatag 25861

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>emb|AL928546.5| Mouse DNA sequence from clone RP23-412C22 on chromosome 2, complete
              sequence
          Length = 193834

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 114    agtgcagtaaagagccaatca 134
              |||||||||||||||||||||
Sbjct: 102386 agtgcagtaaagagccaatca 102406

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>emb|AL591222.2|HS378I6 Homo sapiens chromosome 9 BAC RP11-378I6, complete sequence
          Length = 147211

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 183    ttgtgccttttctcccacata 203
              |||||||||||||||||||||
Sbjct: 143907 ttgtgccttttctcccacata 143887

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>gb|AE017127.1| Yersinia pestis biovar Medievalis str. 91001 section 1 of 16 of the
              complete genome
          Length = 290029

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     gtctattcgcaaagaagata 110
              ||||||||||||||||||||
Sbjct: 157349 gtctattcgcaaagaagata 157330

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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 91      gtctattcgcaaagaagata 110
               ||||||||||||||||||||
Sbjct: 4379704 gtctattcgcaaagaagata 4379685

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>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    agcgacgcgccacgcgctca 402
              ||||||||||||||||||||
Sbjct: 120294 agcgacgcgccacgcgctca 120275

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>emb|AL136311.7| Human DNA sequence from clone RP3-417I1 on chromosome 6 Contains the 5'
             end of the BAG2 gene for BCL2-associated athanogene 2, the
             3' end of gene KIAA0576, the 5' end of a novel gene and a
             CpG island, complete sequence
          Length = 58988

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   taattatgtcatagccatct 230
             ||||||||||||||||||||
Sbjct: 42585 taattatgtcatagccatct 42566

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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 636     tcggcttcattttctggtat 655
               ||||||||||||||||||||
Sbjct: 3226606 tcggcttcattttctggtat 3226587

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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 91      gtctattcgcaaagaagata 110
               ||||||||||||||||||||
Sbjct: 4460071 gtctattcgcaaagaagata 4460090

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>gb|AC159645.2| Mus musculus BAC clone RP23-242E11 from chromosome 12, complete
            sequence
          Length = 220771

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 81   ttcattgctggtctattcgcaaag 104
            |||||||||||||||||| |||||
Sbjct: 1367 ttcattgctggtctattcacaaag 1344

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>emb|AL592102.1|LISINP100 Listeria innocua plasmid pLI100, complete sequence
          Length = 81905

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   atataatttgtgccttttct 195
             ||||||||||||||||||||
Sbjct: 73377 atataatttgtgccttttct 73358



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   atataatttgtgccttttct 195
             ||||||||||||||||||||
Sbjct: 65164 atataatttgtgccttttct 65145



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   atataatttgtgccttttct 195
             ||||||||||||||||||||
Sbjct: 22291 atataatttgtgccttttct 22310



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   atataatttgtgccttttct 195
             ||||||||||||||||||||
Sbjct: 14556 atataatttgtgccttttct 14537

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>emb|AJ414141.1| Yersinia pestis strain CO92 complete genome; segment 1/20
          Length = 288050

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     gtctattcgcaaagaagata 110
              ||||||||||||||||||||
Sbjct: 156623 gtctattcgcaaagaagata 156604

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>gb|AE012256.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 164
            of 460 of the complete genome
          Length = 11894

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 373  gaacaattccagcgacgcgc 392
            ||||||||||||||||||||
Sbjct: 4323 gaacaattccagcgacgcgc 4342

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>gb|AC087189.3| Homo sapiens chromosome 16 clone RP11-43L5, complete sequence
          Length = 184877

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 288    ccatgcataattgcagcaga 307
              ||||||||||||||||||||
Sbjct: 167690 ccatgcataattgcagcaga 167671

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>gb|AC159625.2| Mus musculus BAC clone RP24-262L7 from chromosome 12, complete sequence
          Length = 189979

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    ttcattgctggtctattcgcaaag 104
             |||||||||||||||||| |||||
Sbjct: 26950 ttcattgctggtctattcacaaag 26973

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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 373     gaacaattccagcgacgcgc 392
               ||||||||||||||||||||
Sbjct: 3226954 gaacaattccagcgacgcgc 3226935

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>gb|AC009154.5| Homo sapiens chromosome 16 clone RP11-58A18, complete sequence
          Length = 181914

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   taatttgtgccttttctccc 198
             ||||||||||||||||||||
Sbjct: 66405 taatttgtgccttttctccc 66386

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>emb|BX322785.6| Zebrafish DNA sequence from clone DKEYP-78B1 in linkage group 24,
            complete sequence
          Length = 176602

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 365  caatgcatgaacaattccag 384
            ||||||||||||||||||||
Sbjct: 9422 caatgcatgaacaattccag 9403

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>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0534H07
          Length = 144689

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   atcataacagatcaaactac 150
             ||||||||||||||||||||
Sbjct: 49484 atcataacagatcaaactac 49465

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>emb|AL954147.12| Zebrafish DNA sequence from clone CH211-117H23 in linkage group 24,
             complete sequence
          Length = 188067

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   caatgcatgaacaattccag 384
             ||||||||||||||||||||
Sbjct: 83632 caatgcatgaacaattccag 83613

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>gb|AC115017.11| Mus musculus chromosome 3, clone RP24-220A11, complete sequence
          Length = 167811

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 313   ctttctccaggcccagcactgtgt 336
             |||||||||| |||||||||||||
Sbjct: 92803 ctttctccagccccagcactgtgt 92780

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>gb|U15554.2|LMU15554 Listeria monocytogenes strain DRDC8 plasmid hypothetical protein
             (pCT0001) gene, partial cds; hypothetical protein
             (pCT0002), unknown (pCT0003), hypothetical protein
             (pCT0004), hypothetical protein (pCT0005), hypothetical
             protein (pCT0006), hypothetical protein (pCT0007), and
             hypothetical protein (pCT0008) genes, complete cds;
             insertion sequence ISS1-like hypothetical protein
             (pCT0009) gene, complete cds; unknown (pCT0010) gene,
             complete cds; insertion sequence ISS1-like hypothetical
             protein (pCT0011) gene, complete cds; hypothetical protein
             (pCT0012), hypothetical protein (pCT0013), and
             hypothetical protein (pCT0014) genes, complete cds;
             insertion sequence ISS1-like hypothetical protein
             (pCT0015) gene, complete cds; hypothetical protein
             (pCT0016), hypothetical protein (pCT0017), hypothetical
             protein (pCT0018), hypothetical protein (pCT0019), and
             CtpA (ctpA) genes, complete cds; transposon nonfunctional
             transposase (pCT0021) gene, complete sequence;
             hypothetical protein (pCT0022) and hypothetical protein
             (pCT0023) genes, complete cds; and hypothetical protein
             (pCT0024) gene, partial cds
          Length = 29446

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   atataatttgtgccttttct 195
             ||||||||||||||||||||
Sbjct: 18746 atataatttgtgccttttct 18765



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   atataatttgtgccttttct 195
             ||||||||||||||||||||
Sbjct: 10653 atataatttgtgccttttct 10672



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 176  atataatttgtgccttttct 195
            ||||||||||||||||||||
Sbjct: 9147 atataatttgtgccttttct 9128


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,684,009
Number of Sequences: 3902068
Number of extensions: 5684009
Number of successful extensions: 107260
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106896
Number of HSP's gapped (non-prelim): 358
length of query: 686
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 663
effective length of database: 17,143,297,704
effective search space: 11366006377752
effective search space used: 11366006377752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result