ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19p13 |
|---|---|
| Clone Library Name | barley_pub |
>DNAE2_MYCPA (Q73U92) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1093 Score = 32.7 bits (73), Expect = 0.37 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +2 Query: 299 PVSLPRLHPVPRREPGLEPHVVGDPLDEPAVRLALPVPL 415 P+ +HP RR G++P + P EPA+R L VPL Sbjct: 676 PIQGGSVHPYIRRRNGVDPVLYDHPSMEPALRKTLGVPL 714
>DNAE2_PROAC (Q6A780) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1134 Score = 32.0 bits (71), Expect = 0.62 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +2 Query: 299 PVSLPRLHPVPRREPGLEPHVVGDPLDEPAVRLALPVPL 415 PV +HP RR G+EP PL EP + L +PL Sbjct: 675 PVQGGAVHPYIRRRTGVEPVTYPHPLLEPVLERTLGIPL 713
>DNAE2_CORJK (Q4JTH1) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1153 Score = 32.0 bits (71), Expect = 0.62 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +2 Query: 299 PVSLPRLHPVPRREPGLEPHVVGDPLDEPAVRLALPVPL 415 P+ +HP RR GLEP P EPA+ L +PL Sbjct: 682 PIQGGSVHPYIRRRNGLEPVTFDHPCLEPALTKTLGIPL 720
>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)| Length = 1168 Score = 31.6 bits (70), Expect = 0.81 Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Frame = +2 Query: 272 RRDVVPLIPPVSLPRLHPVPRREP-GLEPHVVGDP 373 RRD P PP LPR P P P GLEP V P Sbjct: 40 RRDCRPPPPPTGLPRGPPPPPSPPRGLEPPVASGP 74
>DNAE2_MYCTU (O50399) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1098 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +2 Query: 299 PVSLPRLHPVPRREPGLEPHVVGDPLDEPAVRLALPVPL 415 P+ +HP RR G++P + P PA+R L VPL Sbjct: 681 PIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPL 719
>DNAE2_MYCBO (Q7TWL9) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1091 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +2 Query: 299 PVSLPRLHPVPRREPGLEPHVVGDPLDEPAVRLALPVPL 415 P+ +HP RR G++P + P PA+R L VPL Sbjct: 674 PIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPL 712
>UVRA_STRAW (Q829X3) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 1009 Score = 30.8 bits (68), Expect = 1.4 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = +2 Query: 161 VLAENLREEVVGVPTLHLGVELR---DEPGLQ*VAVVEEPRR 277 V+AE EEV GVPT H G LR D + A V+ PR+ Sbjct: 919 VVAEGTPEEVAGVPTSHTGKFLREILDADRISDAASVKAPRK 960
>PININ_CANFA (P79149) Pinin| Length = 773 Score = 30.4 bits (67), Expect = 1.8 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Frame = +2 Query: 269 PRRDVVPLIPPVSLPRLHPVPRREP----GLEPHVVGDPLDEPAVRLALPVPL 415 P+ + P + P P+L P P+ +P L+P +P ++L LP+PL Sbjct: 482 PQPEPEPELQPEPQPQLQPEPQLQPQLQLQLQPQPQSQSQPQPQLQLPLPLPL 534
>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding| protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) Length = 2426 Score = 30.4 bits (67), Expect = 1.8 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +2 Query: 281 VVPLIPPVSLPRLHPVPRREPGLEPHVVGDPLDEPAVRLALP 406 +VP +PP P + P+P EP + P + P +EP ALP Sbjct: 1145 MVPPLPPEEPPTMPPLPPEEPPMTPPL---PPEEPPEGPALP 1183
>CNGC5_ARATH (Q8RWS9) Probable cyclic nucleotide-gated ion channel 5 (AtCNGC5)| (Cyclic nucleotide- and calmodulin-regulated ion channel 5) Length = 717 Score = 30.4 bits (67), Expect = 1.8 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -3 Query: 257 LRLTEARVRRAAQRQDEEWVHRRLLRADSRQ 165 +RL E RV+R R E+W+H R+L D R+ Sbjct: 424 IRLEEMRVKR---RDSEQWMHHRMLPQDLRE 451
>UVRA_STRCO (Q9Z507) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 1014 Score = 29.6 bits (65), Expect = 3.1 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +2 Query: 161 VLAENLREEVVGVPTLHLGVELRDEPGLQ*V---AVVEEPRR 277 V+AE E+V GVP H G LRD G V A V PR+ Sbjct: 919 VVAEGTPEQVAGVPASHTGKFLRDVLGADRVSDAAPVTRPRK 960
>DYHC_CAEEL (Q19020) Dynein heavy chain, cytosolic (DYHC)| Length = 4568 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +2 Query: 116 SGSKLGFVVPPQLLHVLAENLREEVVGVPTLHLGVELRDEPGL 244 SG++ + PP L +++E +V V T H G+ RD+ L Sbjct: 3 SGNESSIIQPPNLKTAAEGDVKEYIVQVVTSHFGLSPRDQTTL 45
>WBS14_HUMAN (Q9NP71) Williams-Beuren syndrome chromosome region 14 protein (WS| basic-helix-loop-helix leucine zipper protein) (WS-bHLH) (Mlx interactor) (MLX-interacting protein-like) Length = 852 Score = 29.3 bits (64), Expect = 4.0 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +2 Query: 263 EEPRRDVVPLIPPVSLPRLH-PVPRREPGLEP 355 E+P+ + P PPV P LH P P + PGLEP Sbjct: 380 EDPKPRLPP--PPVPPPLLHYPPPAKVPGLEP 409
>SPKC_SYNY3 (P74745) Serine/threonine-protein kinase C (EC 2.7.11.1)| Length = 535 Score = 29.3 bits (64), Expect = 4.0 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 6/83 (7%) Frame = +2 Query: 185 EVVGVPTLHLGVELRDEPGLQ*VAVVEEPRRDVVPLIPPVSLPRLH------PVPRREPG 346 E PT + EP L A + EP+ P I P P + PVP+ P Sbjct: 423 ETTSSPTEDTITPMEPEPSLDEPAPIPEPKPSPSPTISPQPSPTISIPVTPAPVPKPSPS 482 Query: 347 LEPHVVGDPLDEPAVRLALPVPL 415 P P P + + VP+ Sbjct: 483 PTPKPTVPPQISPTPQPSNTVPV 505
>HCLS1_MOUSE (P49710) Hematopoietic lineage cell-specific protein (Hematopoietic| cell-specific LYN substrate 1) (LckBP1) Length = 486 Score = 29.3 bits (64), Expect = 4.0 Identities = 21/54 (38%), Positives = 23/54 (42%) Frame = +2 Query: 227 RDEPGLQ*VAVVEEPRRDVVPLIPPVSLPRLHPVPRREPGLEPHVVGDPLDEPA 388 R GLQ VVEEP + P + P P P P EP E D DE A Sbjct: 351 RTPEGLQ---VVEEPVYEAAPELEPEPEPDYEPEPETEPDYEDVGELDRQDEDA 401
>DNLJ_MYCGE (P47496) DNA ligase (EC 6.5.1.2) (Polydeoxyribonucleotide synthase| [NAD+]) Length = 659 Score = 28.9 bits (63), Expect = 5.3 Identities = 20/62 (32%), Positives = 29/62 (46%) Frame = -1 Query: 193 DDFFAQILGKNVQQLWRDYKSKFGA*IHD*PTXRCXGXARYIYRNDQHNKCFMTLYNKXK 14 DDF +L K++QQL +D+ D PT R G A ++ HN ++L N Sbjct: 31 DDFEYDMLYKSLQQLEKDHPDLIQI---DSPTQRVGGEAVKGFKKLNHNSPMLSLENAFS 87 Query: 13 HK 8 K Sbjct: 88 TK 89
>GNDS_RAT (Q03386) Ral guanine nucleotide dissociation stimulator (RalGEF)| (RalGDS) Length = 895 Score = 28.9 bits (63), Expect = 5.3 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = +2 Query: 254 AVVEEPRRDVVPLIPPVSLPRLHPVPRREPGLEPHVVGDPLDEPAVRL 397 AV P R+ P+ S P + P EP LEP + +P PA L Sbjct: 276 AVASTPVREPAPVPVLASSPVVAPASELEPALEPPLDPEPTLAPAPEL 323
>CNGC6_ARATH (O82226) Probable cyclic nucleotide-gated ion channel 6 (AtCNGC6)| (Cyclic nucleotide- and calmodulin-regulated ion channel 6) Length = 747 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -3 Query: 257 LRLTEARVRRAAQRQDEEWVHRRLLRADSRQ 165 +RL E RV+R R E+W+H R+L + R+ Sbjct: 440 IRLEEMRVKR---RDSEQWMHHRMLPPELRE 467
>MYSP_DIRIM (P13392) Paramyosin (Fragment)| Length = 848 Score = 28.9 bits (63), Expect = 5.3 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = -3 Query: 284 RRHGEVPRLLRLTEARVRRAAQRQDEEWVHRRLLRADSRQERAAAVAGLQIQVWSL 117 RRH E LR + R++ + DEE H+ + A +R + L IQ W L Sbjct: 737 RRHKETQGALRKKDRRIKEVQMQVDEE--HKMFVMAQDTADR--LLEKLNIQKWQL 788
>CNGC9_ARATH (Q9M0A4) Putative cyclic nucleotide-gated ion channel 9 (Cyclic| nucleotide- and calmodulin-regulated ion channel 9) Length = 733 Score = 28.9 bits (63), Expect = 5.3 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -3 Query: 257 LRLTEARVRRAAQRQDEEWVHRRLLRADSRQ 165 +RL E RV+R R E+W+H R+L + R+ Sbjct: 439 IRLEEMRVKR---RDSEQWMHHRMLPPELRE 466
>ALG2_YEAST (P43636) Alpha-1,3-mannosyltransferase ALG2 (EC 2.4.1.-)| (GDP-Man:Man(1)GlcNAc(2)-PP-dolichol mannosyltransferase) (Asparagine-linked glycosylation protein 2) Length = 503 Score = 28.5 bits (62), Expect = 6.9 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Frame = -1 Query: 391 NGGLIEGIADYVRLKAGFAPGHWVKPGQGDRWDQGYDVTARFLDYCDSLKPGFVAQLNAK 212 NGG +E I YV + + W+KP +W D + + L + F + Sbjct: 356 NGGPLETIKSYVAGENESSATGWLKPAVPIQWATAIDESRKIL---QNGSVNFERNGPLR 412 Query: 211 MKSGYTDDFFAQILGKNVQQ-LWRDYK 134 +K ++ + Q +NV++ +W++ K Sbjct: 413 VKKYFSREAMTQSFEENVEKVIWKEKK 439
>ERFB_ASPFU (Q4WWN2) Palmitoyltransferase erf2 (EC 2.3.1.-) (DHHC cysteine-rich| domain-containing protein erf2) (Ras protein acyltransferase) Length = 607 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Frame = +2 Query: 290 LIPPVSLPR-LHPVPRREPGLEPHVVGDPLDE 382 ++ P +PR LHP+P EP +P ++G P ++ Sbjct: 355 VVDPGIIPRNLHPMPPPEPSGDPLLIGPPTND 386
>INCE_CHICK (P53352) Inner centromere protein| Length = 877 Score = 28.5 bits (62), Expect = 6.9 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%) Frame = -3 Query: 245 EARVRRAAQRQDEEWVHRRLL--RADSRQERAAAVA 144 EAR ++A Q+++EE H+ L+ + + QERA +A Sbjct: 612 EARKQKALQQEEEERRHKELMQKKKEEEQERARKIA 647
>BTG3_RAT (O88677) BTG3 protein (Rbtg3)| Length = 252 Score = 28.5 bits (62), Expect = 6.9 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = +2 Query: 251 VAVVEEPRRDVVPLIPPVSLPRLHPVPRREPGLEPHVVGDPLDEPAVRLALPVP 412 VA P + LI P LP HP+PR++PG+ P V A P P Sbjct: 164 VATTPSPVYQISELIFP-PLPMWHPLPRKKPGMYRGGGHQSHYPPPVPFAYPSP 216
>BTG3_MOUSE (P50615) BTG3 protein (Tob5 protein) (Abundant in neuroepithelium| area protein) Length = 252 Score = 28.5 bits (62), Expect = 6.9 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = +2 Query: 251 VAVVEEPRRDVVPLIPPVSLPRLHPVPRREPGLEPHVVGDPLDEPAVRLALPVP 412 VA P + LI P LP HP+PR++PG+ P V A P P Sbjct: 164 VAATPSPVYQISELIFP-PLPMWHPLPRKKPGMYRGSGHQTHYPPPVPFAYPNP 216
>BOK_HUMAN (Q9UMX3) Bcl-2-related ovarian killer protein (Hbok)| Length = 212 Score = 28.5 bits (62), Expect = 6.9 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = -3 Query: 248 TEARVRRAAQRQDEEWVHRRLLRAD---SRQERAAAVAGLQIQVWSLNTRL 105 T+ + A+ E+VH RLLRA S ERAA V G +V ++ RL Sbjct: 23 TDKELVAQAKALGREYVHARLLRAGLSWSAPERAAPVPGRLAEVCAVLLRL 73
>TONB_KLEPN (P45610) Protein tonB| Length = 243 Score = 28.5 bits (62), Expect = 6.9 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = +2 Query: 290 LIPPVSLPRLHPVPRREPGLEPHVVGDPLDEPAV 391 L PP + P + PV EP EP VV +P E V Sbjct: 55 LEPPPAQPVVEPVVEPEPEPEPEVVPEPPKEAVV 88
>ATI2_HHV11 (P10230) Alpha trans-inducing factor 78 kDa protein| Length = 718 Score = 28.5 bits (62), Expect = 6.9 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 10/59 (16%) Frame = +2 Query: 260 VEEPRRDVVPLIPPVSLPRLHPVP--------RREPGLEPHV--VGDPLDEPAVRLALP 406 ++ RRD P PP+ PRLH P RR G P + DP+ EP P Sbjct: 459 IQRARRDNEP--PPLPRPRLHSTPASTRRFRRRRADGAGPPLPDANDPVAEPPAAATQP 515
>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2| Length = 924 Score = 28.1 bits (61), Expect = 9.0 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Frame = +2 Query: 179 REEVV---GVPTLHLGVELRDEPGLQ*VAVVEEPRRDVVPLIPPVSLPRLHPVPRREPGL 349 REE+ G P+ GV L PG Q P +P P HP P +PG Sbjct: 123 REELAPPAGQPSEQPGVPL---PGQQGTPAAPHPGHPGMPTGP-------HPGPAPKPGG 172 Query: 350 EPHVVGDPLDEPAVRLALPVP 412 P VG+ A +A P+P Sbjct: 173 RPPRVGNNPFSSAQSVARPIP 193
>FAS2_DROME (P34082) Fasciclin-2 precursor (Fasciclin II) (FAS II)| Length = 873 Score = 28.1 bits (61), Expect = 9.0 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 16/63 (25%) Frame = +2 Query: 203 TLHLGV-------------ELRDEPGLQ*VAVVEEPRRDVVPLIPPVSL---PRLHPVPR 334 T+H+GV E+ DE L +V+EP +PL PPV L P P+ Sbjct: 776 TVHMGVMATMCRKAKRSPSEIDDEAKLGSGQLVKEPPPSPLPLPPPVKLGGSPMSTPLDE 835 Query: 335 REP 343 +EP Sbjct: 836 KEP 838
>MTF1_MOUSE (Q07243) Metal-regulatory transcription factor 1 (Transcription| factor MTF-1) (MRE-binding transcription factor) Length = 675 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/54 (31%), Positives = 25/54 (46%) Frame = +2 Query: 260 VEEPRRDVVPLIPPVSLPRLHPVPRREPGLEPHVVGDPLDEPAVRLALPVPLXH 421 + EP + ++P P + P P P PG +P G P PA+ VP+ H Sbjct: 426 ISEPPQPLLPATAPSAPP---PAPSLGPGSQPAAFGSP---PALLQPPEVPVPH 473
>IF2_AZOSE (Q5NZS1) Translation initiation factor IF-2| Length = 945 Score = 28.1 bits (61), Expect = 9.0 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Frame = +2 Query: 176 LREEVVGVPTLHLGVELRDEPGLQ*VAVV---EEPRRDVVPLIPPVSLPRLHPVPRREPG 346 + EE G+P + E ++ VA EP R+ P P+ P P P EP Sbjct: 113 IEEETAGLPMGEIEPTPEPENIVEPVAEAIPEPEPVREPEPEPEPIVEPEPEPEPEPEPE 172 Query: 347 LEPHVVGDPLDEPA 388 +P P EPA Sbjct: 173 PQPEPEPRPEPEPA 186 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,819,727 Number of Sequences: 219361 Number of extensions: 1112200 Number of successful extensions: 4236 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3902 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4159 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
