Clone Name | rbasd19p13 |
---|---|
Clone Library Name | barley_pub |
>gb|AF079526.1|AF079526 Triticum aestivum secretory protein (WAS-2) mRNA, complete cds Length = 894 Score = 482 bits (243), Expect = e-133 Identities = 298/314 (94%), Gaps = 2/314 (0%) Strand = Plus / Minus Query: 115 ttcaggctccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaa 174 ||||| ||| |||||||| |||||||||| ||||||||||||||||||||| ||||||| Sbjct: 716 ttcagcctctaaacttggctttgtagtccttccacagctgctgcacgttcttcccgagaa 657 Query: 175 tctgcgcgaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacga 234 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 656 tctgcgcgaagaagtcgtcggtgtacccactcttcatcttggcgttgacgtgcgcgacga 597 Query: 235 acccgggcttcagtgagtcgcagtagtcgaggaacctcgccgtgacgtcgtacccctgat 294 |||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 596 acccgggcttgagcgagtcgcagtagtcaaggaacctcgccgtgacgtcgtacccctgat 537 Query: 295 cccaccggtctccctgccccggcttcacccagtgccccggcgcgaacccggccttgagcc 354 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 536 cccaccggtcgccctgccccggcttcacccagtgccccggcgcgaacccggccttgagcc 477 Query: 355 gcacgtagtcggcgatcccctcgatgagcccgccgttcgccttgccct-gcccgttccac 413 ||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| Sbjct: 476 gcacgtagtcggcgatcccctcgatgagcccgccgttcgcc-tgccctgggccgttccac 418 Query: 414 tgncacacgtgcgt 427 || ||||||||||| Sbjct: 417 tgccacacgtgcgt 404
>emb|Y14202.1|HVY14202 Hordeum vulgare mRNA for hypothetical protein, clone pBH6-17 Length = 859 Score = 381 bits (192), Expect = e-102 Identities = 281/311 (90%) Strand = Plus / Minus Query: 114 attcaggctccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgaga 173 |||||| |||| ||||||| |||||||||| |||||||||||| |||||||| |||||| Sbjct: 720 attcagcctccgaacttggctttgtagtccttccacagctgctggacgttcttcccgaga 661 Query: 174 atctgcgcgaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacg 233 |||||||||||||| || ||| ||||||| |||||||||||||||||||||||||||||| Sbjct: 660 atctgcgcgaagaaatcatcgctgtacccgctcttcatcttggcgttgagctgcgcgacg 601 Query: 234 aacccgggcttcagtgagtcgcagtagtcgaggaacctcgccgtgacgtcgtacccctga 293 ||||||||| | || ||||||||||||||||||||||||||||||| |||||| |||||| Sbjct: 600 aacccgggcatgagcgagtcgcagtagtcgaggaacctcgccgtgatgtcgtatccctga 541 Query: 294 tcccaccggtctccctgccccggcttcacccagtgccccggcgcgaacccggccttgagc 353 ||||||||||| || |||| || | ||||||||||||||| | ||||||||||||| Sbjct: 540 tcccaccggtcgccgctcccctgcggcctccagtgccccggcgccagcccggccttgagc 481 Query: 354 cgcacgtagtcggcgatcccctcgatgagcccgccgttcgccttgccctgcccgttccac 413 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 480 cgcacgtagtcggcgatcccctcgatgagcccgccgttcgccgtgccccgcccgttccac 421 Query: 414 tgncacacgtg 424 || |||||||| Sbjct: 420 tgccacacgtg 410
>gb|AY108161.1| Zea mays PCO128916 mRNA sequence Length = 648 Score = 361 bits (182), Expect = 1e-96 Identities = 265/293 (90%) Strand = Plus / Minus Query: 135 ttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgcgaagaagtcgtcg 194 ||||||||| ||||||||||||||||| ||||||| || ||||| ||||||||||||||| Sbjct: 353 ttgtagtcctgccacagctgctgcacggtcttgcccaggatctgggcgaagaagtcgtcg 294 Query: 195 gtgtacccactcttcatcttggcgttgagctgcgcgacgaacccgggcttcagtgagtcg 254 ||||| || ||||||||||||||||||| |||||||||| || ||||| || |||||| Sbjct: 293 gtgtagccgtccttcatcttggcgttgagcagcgcgacgaagcccggcttgagcgagtcg 234 Query: 255 cagtagtcgaggaacctcgccgtgacgtcgtacccctgatcccaccggtctccctgcccc 314 |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 233 cagtagtccaggaacctcgccgtgacgtcgtacccctggtcccaccggtccccctgcccc 174 Query: 315 ggcttcacccagtgccccggcgcgaacccggccttgagccgcacgtagtcggcgatcccc 374 |||| ||||||||| ||||||||| |||| ||||| ||||| |||||||||||||| ||| Sbjct: 173 ggctgcacccagtggcccggcgcgtaccccgccttcagccggacgtagtcggcgatgccc 114 Query: 375 tcgatgagcccgccgttcgccttgccctgcccgttccactgncacacgtgcgt 427 |||||||| ||||||||||||| ||||||||||| |||||| ||||||||||| Sbjct: 113 tcgatgaggccgccgttcgcctggccctgcccgtcccactgccacacgtgcgt 61
>gb|U32431.1|TAU32431 Triticum aestivum mRNA, clone WCI-5, complete cds Length = 862 Score = 172 bits (87), Expect = 6e-40 Identities = 233/282 (82%) Strand = Plus / Minus Query: 146 ccacagctgctgcacgttcttgccgagaatctgcgcgaagaagtcgtcggtgtacccact 205 ||||||||| | |||| |||| || || |||||| ||||| |||||||| |||| || Sbjct: 672 ccacagctggtccacgctcttccccaggatctgcacgaagtagtcgtcgctgtatccgtc 613 Query: 206 cttcatcttggcgttgagctgcgcgacgaacccgggcttcagtgagtcgcagtagtcgag 265 ||| | |||| ||| | || ||| |||||||||| ||| || |||||||||||||| || Sbjct: 612 cttgagcttgctgttcatctccgccacgaacccggccttgagggagtcgcagtagtccag 553 Query: 266 gaacctcgccgtgacgtcgtacccctgatcccaccggtctccctgccccggcttcaccca 325 |||| | ||||| ||||||||||||| ||||| ||||| || |||| || ||| Sbjct: 552 gaacttggccgtcacgtcgtacccctcgtcccaacggtcgccgctcccctgcgggcgcca 493 Query: 326 gtgccccggcgcgaacccggccttgagccgcacgtagtcggcgatcccctcgatgagccc 385 |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 492 gtgcgtcggcgcgaggtcggccttgagccgcacgtagtcggcgatcccctcgatgagccc 433 Query: 386 gccgttcgccttgccctgcccgttccactgncacacgtgcgt 427 |||||| ||| ||||||||||||||||||| ||||||||||| Sbjct: 432 gccgtttgccctgccctgcccgttccactgccacacgtgcgt 391
>ref|NM_197124.1| Oryza sativa (japonica cultivar-group) putative secretory protein (OSJNBa0051D19.12), mRNA Length = 783 Score = 147 bits (74), Expect = 3e-32 Identities = 125/142 (88%) Strand = Plus / Minus Query: 249 gagtcgcagtagtcgaggaacctcgccgtgacgtcgtacccctgatcccaccggtctccc 308 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct: 644 gagtcgcagtagtcgaggaacctcgccgtcacgtcgtacccctggtcccaccggtcgccc 585 Query: 309 tgccccggcttcacccagtgccccggcgcgaacccggccttgagccgcacgtagtcggcg 368 ||||| |||| |||||||||| ||||||| | ||||| || || ||| |||||||| Sbjct: 584 tgcccgggctgcacccagtgcggcggcgcgtagccggcgcgcagtcggacgaagtcggcg 525 Query: 369 atcccctcgatgagcccgccgt 390 ||||||||||| |||||||||| Sbjct: 524 atcccctcgatcagcccgccgt 503 Score = 60.0 bits (30), Expect = 6e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 181 cgaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaaccc 238 |||||||||||||| |||| || |||||||||| ||||||||||||| |||||||| Sbjct: 718 cgaagaagtcgtcgctgtatccgtccttcatcttgccgttgagctgcgccacgaaccc 661
>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence Length = 131984 Score = 147 bits (74), Expect = 3e-32 Identities = 125/142 (88%) Strand = Plus / Minus Query: 249 gagtcgcagtagtcgaggaacctcgccgtgacgtcgtacccctgatcccaccggtctccc 308 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct: 90380 gagtcgcagtagtcgaggaacctcgccgtcacgtcgtacccctggtcccaccggtcgccc 90321 Query: 309 tgccccggcttcacccagtgccccggcgcgaacccggccttgagccgcacgtagtcggcg 368 ||||| |||| |||||||||| ||||||| | ||||| || || ||| |||||||| Sbjct: 90320 tgcccgggctgcacccagtgcggcggcgcgtagccggcgcgcagtcggacgaagtcggcg 90261 Query: 369 atcccctcgatgagcccgccgt 390 ||||||||||| |||||||||| Sbjct: 90260 atcccctcgatcagcccgccgt 90239 Score = 79.8 bits (40), Expect = 7e-12 Identities = 127/156 (81%) Strand = Plus / Plus Query: 122 tccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgc 181 |||| |||||| ||||| ||| ||||||||||||||||| |||| ||| |||||| | Sbjct: 86579 tccatacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcac 86638 Query: 182 gaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaacccggg 241 |||| ||||| || |||||||| |||||| ||| ||||| || | || |||||||| || Sbjct: 86639 gaagtagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctgg 86698 Query: 242 cttcagtgagtcgcagtagtcgaggaacctcgccgt 277 ||| | |||||||||||||| |||||||||||| Sbjct: 86699 cttgacgctgtcgcagtagtcgaagaacctcgccgt 86734 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Minus Query: 135 ttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgcgaagaagtcgtcg 194 ||||| ||| ||||||||||||||||| |||| ||| |||||| ||||| ||||| | Sbjct: 92853 ttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaagtagtcgaca 92794 Query: 195 gtgtacccactcttcatcttggcgttgagctgcgcgacgaacccgggcttcagtgagtcg 254 ||||||| ||||| |||||| |||| | ||||||||||| ||||| | |||| Sbjct: 92793 ttgtacccgtccttcaacttggcattgatgtcggcgacgaaccctggcttgacgctgtcg 92734 Query: 255 cagtagtcgaggaacctcgccgt 277 |||||||||| |||||||||||| Sbjct: 92733 cagtagtcgaagaacctcgccgt 92711 Score = 60.0 bits (30), Expect = 6e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 181 cgaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaaccc 238 |||||||||||||| |||| || |||||||||| ||||||||||||| |||||||| Sbjct: 90454 cgaagaagtcgtcgctgtatccgtccttcatcttgccgttgagctgcgccacgaaccc 90397 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Minus Query: 351 agccgcacgtagtcggcgatcccctcg 377 ||||||||| ||||||||||||||||| Sbjct: 92637 agccgcacgaagtcggcgatcccctcg 92611
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 147 bits (74), Expect = 3e-32 Identities = 125/142 (88%) Strand = Plus / Plus Query: 249 gagtcgcagtagtcgaggaacctcgccgtgacgtcgtacccctgatcccaccggtctccc 308 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct: 18122748 gagtcgcagtagtcgaggaacctcgccgtcacgtcgtacccctggtcccaccggtcgccc 18122807 Query: 309 tgccccggcttcacccagtgccccggcgcgaacccggccttgagccgcacgtagtcggcg 368 ||||| |||| |||||||||| ||||||| | ||||| || || ||| |||||||| Sbjct: 18122808 tgcccgggctgcacccagtgcggcggcgcgtagccggcgcgcagtcggacgaagtcggcg 18122867 Query: 369 atcccctcgatgagcccgccgt 390 ||||||||||| |||||||||| Sbjct: 18122868 atcccctcgatcagcccgccgt 18122889 Score = 79.8 bits (40), Expect = 7e-12 Identities = 127/156 (81%) Strand = Plus / Minus Query: 122 tccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgc 181 |||| |||||| ||||| ||| ||||||||||||||||| |||| ||| |||||| | Sbjct: 18126549 tccatacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcac 18126490 Query: 182 gaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaacccggg 241 |||| ||||| || |||||||| |||||| ||| ||||| || | || |||||||| || Sbjct: 18126489 gaagtagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctgg 18126430 Query: 242 cttcagtgagtcgcagtagtcgaggaacctcgccgt 277 ||| | |||||||||||||| |||||||||||| Sbjct: 18126429 cttgacgctgtcgcagtagtcgaagaacctcgccgt 18126394 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 135 ttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgcgaagaagtcgtcg 194 ||||| ||| ||||||||||||||||| |||| ||| |||||| ||||| ||||| | Sbjct: 18120275 ttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaagtagtcgaca 18120334 Query: 195 gtgtacccactcttcatcttggcgttgagctgcgcgacgaacccgggcttcagtgagtcg 254 ||||||| ||||| |||||| |||| | ||||||||||| ||||| | |||| Sbjct: 18120335 ttgtacccgtccttcaacttggcattgatgtcggcgacgaaccctggcttgacgctgtcg 18120394 Query: 255 cagtagtcgaggaacctcgccgt 277 |||||||||| |||||||||||| Sbjct: 18120395 cagtagtcgaagaacctcgccgt 18120417 Score = 60.0 bits (30), Expect = 6e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 181 cgaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaaccc 238 |||||||||||||| |||| || |||||||||| ||||||||||||| |||||||| Sbjct: 18122674 cgaagaagtcgtcgctgtatccgtccttcatcttgccgttgagctgcgccacgaaccc 18122731 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Plus Query: 351 agccgcacgtagtcggcgatcccctcg 377 ||||||||| ||||||||||||||||| Sbjct: 18120491 agccgcacgaagtcggcgatcccctcg 18120517
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 147 bits (74), Expect = 3e-32 Identities = 125/142 (88%) Strand = Plus / Plus Query: 249 gagtcgcagtagtcgaggaacctcgccgtgacgtcgtacccctgatcccaccggtctccc 308 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct: 18132001 gagtcgcagtagtcgaggaacctcgccgtcacgtcgtacccctggtcccaccggtcgccc 18132060 Query: 309 tgccccggcttcacccagtgccccggcgcgaacccggccttgagccgcacgtagtcggcg 368 ||||| |||| |||||||||| ||||||| | ||||| || || ||| |||||||| Sbjct: 18132061 tgcccgggctgcacccagtgcggcggcgcgtagccggcgcgcagtcggacgaagtcggcg 18132120 Query: 369 atcccctcgatgagcccgccgt 390 ||||||||||| |||||||||| Sbjct: 18132121 atcccctcgatcagcccgccgt 18132142 Score = 79.8 bits (40), Expect = 7e-12 Identities = 127/156 (81%) Strand = Plus / Minus Query: 122 tccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgc 181 |||| |||||| ||||| ||| ||||||||||||||||| |||| ||| |||||| | Sbjct: 18135802 tccatacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcac 18135743 Query: 182 gaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaacccggg 241 |||| ||||| || |||||||| |||||| ||| ||||| || | || |||||||| || Sbjct: 18135742 gaagtagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctgg 18135683 Query: 242 cttcagtgagtcgcagtagtcgaggaacctcgccgt 277 ||| | |||||||||||||| |||||||||||| Sbjct: 18135682 cttgacgctgtcgcagtagtcgaagaacctcgccgt 18135647 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 135 ttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgcgaagaagtcgtcg 194 ||||| ||| ||||||||||||||||| |||| ||| |||||| ||||| ||||| | Sbjct: 18129528 ttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaagtagtcgaca 18129587 Query: 195 gtgtacccactcttcatcttggcgttgagctgcgcgacgaacccgggcttcagtgagtcg 254 ||||||| ||||| |||||| |||| | ||||||||||| ||||| | |||| Sbjct: 18129588 ttgtacccgtccttcaacttggcattgatgtcggcgacgaaccctggcttgacgctgtcg 18129647 Query: 255 cagtagtcgaggaacctcgccgt 277 |||||||||| |||||||||||| Sbjct: 18129648 cagtagtcgaagaacctcgccgt 18129670 Score = 60.0 bits (30), Expect = 6e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 181 cgaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaaccc 238 |||||||||||||| |||| || |||||||||| ||||||||||||| |||||||| Sbjct: 18131927 cgaagaagtcgtcgctgtatccgtccttcatcttgccgttgagctgcgccacgaaccc 18131984 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Plus Query: 351 agccgcacgtagtcggcgatcccctcg 377 ||||||||| ||||||||||||||||| Sbjct: 18129744 agccgcacgaagtcggcgatcccctcg 18129770
>emb|Y14201.1|HVY14201 Hordeum vulgare mRNA for hypothetical protein, clone pBH6-12 Length = 829 Score = 103 bits (52), Expect = 5e-19 Identities = 174/212 (82%), Gaps = 2/212 (0%) Strand = Plus / Minus Query: 168 ccgagaatctgcgcgaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgc 227 ||||| |||||| ||||| |||||||| |||| || ||| | |||| |||| | || | Sbjct: 640 ccgaggatctgcacgaagtagtcgtcgttgtagccgtccttgagcttgccgttcatctcc 581 Query: 228 gcgacgaacccgggcttcagtgagtcgcagtagtcgaggaacctcgccgtgacgtcgtac 287 || |||||||||||||| | |||||||||||||| |||||||| ||||| |||||||| Sbjct: 580 gccacgaacccgggcttgcgcgagtcgcagtagtccaggaacctggccgtcacgtcgtat 521 Query: 288 ccctgatcccaccggtctccctgc-cccggcttcacccagtgccccggcgcgaacccggc 346 |||| ||||||||| || || | ||| ||||||||||| | ||| || ||||||| Sbjct: 520 ccctcgtcccaccgg-ctgccgccgccctccttcacccagttcgccgctacgtacccggc 462 Query: 347 cttgagccgcacgtagtcggcgatcccctcga 378 |||||||||||||||||| ||||||||||||| Sbjct: 461 cttgagccgcacgtagtccgcgatcccctcga 430
>ref|NM_197125.1| Oryza sativa (japonica cultivar-group) putative basic secretory protein (OSJNBa0051D19.25), mRNA Length = 690 Score = 79.8 bits (40), Expect = 7e-12 Identities = 127/156 (81%) Strand = Plus / Minus Query: 122 tccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgc 181 |||| |||||| ||||| ||| ||||||||||||||||| |||| ||| |||||| | Sbjct: 684 tccatacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcac 625 Query: 182 gaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaacccggg 241 |||| ||||| || |||||||| |||||| ||| ||||| || | || |||||||| || Sbjct: 624 gaagtagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctgg 565 Query: 242 cttcagtgagtcgcagtagtcgaggaacctcgccgt 277 ||| | |||||||||||||| |||||||||||| Sbjct: 564 cttgacgctgtcgcagtagtcgaagaacctcgccgt 529
>dbj|AK100816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122C23, full insert sequence Length = 856 Score = 79.8 bits (40), Expect = 7e-12 Identities = 127/156 (81%) Strand = Plus / Minus Query: 122 tccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgc 181 |||| |||||| ||||| ||| ||||||||||||||||| |||| ||| |||||| | Sbjct: 704 tccatacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcac 645 Query: 182 gaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaacccggg 241 |||| ||||| || |||||||| |||||| ||| ||||| || | || |||||||| || Sbjct: 644 gaagtagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctgg 585 Query: 242 cttcagtgagtcgcagtagtcgaggaacctcgccgt 277 ||| | |||||||||||||| |||||||||||| Sbjct: 584 cttgacgctgtcgcagtagtcgaagaacctcgccgt 549
>dbj|AK059607.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F02, full insert sequence Length = 852 Score = 79.8 bits (40), Expect = 7e-12 Identities = 127/156 (81%) Strand = Plus / Minus Query: 122 tccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgc 181 |||| |||||| ||||| ||| ||||||||||||||||| |||| ||| |||||| | Sbjct: 700 tccatacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcac 641 Query: 182 gaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaacccggg 241 |||| ||||| || |||||||| |||||| ||| ||||| || | || |||||||| || Sbjct: 640 gaagtagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctgg 581 Query: 242 cttcagtgagtcgcagtagtcgaggaacctcgccgt 277 ||| | |||||||||||||| |||||||||||| Sbjct: 580 cttgacgctgtcgcagtagtcgaagaacctcgccgt 545
>ref|NM_197123.1| Oryza sativa (japonica cultivar-group) putative secretory protein (OSJNBa0051D19.13), mRNA Length = 702 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Minus Query: 135 ttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgcgaagaagtcgtcg 194 ||||| ||| ||||||||||||||||| |||| ||| |||||| ||||| ||||| | Sbjct: 683 ttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaagtagtcgaca 624 Query: 195 gtgtacccactcttcatcttggcgttgagctgcgcgacgaacccgggcttcagtgagtcg 254 ||||||| ||||| |||||| |||| | ||||||||||| ||||| | |||| Sbjct: 623 ttgtacccgtccttcaacttggcattgatgtcggcgacgaaccctggcttgacgctgtcg 564 Query: 255 cagtagtcgaggaacctcgccgt 277 |||||||||| |||||||||||| Sbjct: 563 cagtagtcgaagaacctcgccgt 541 Score = 46.1 bits (23), Expect = 0.093 Identities = 26/27 (96%) Strand = Plus / Minus Query: 351 agccgcacgtagtcggcgatcccctcg 377 ||||||||| ||||||||||||||||| Sbjct: 467 agccgcacgaagtcggcgatcccctcg 441
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 46.1 bits (23), Expect = 0.093 Identities = 23/23 (100%) Strand = Plus / Plus Query: 320 cacccagtgccccggcgcgaacc 342 ||||||||||||||||||||||| Sbjct: 3952396 cacccagtgccccggcgcgaacc 3952418
>emb|CR318624.8| Zebrafish DNA sequence from clone CH211-227I15 in linkage group 24, complete sequence Length = 170084 Score = 42.1 bits (21), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 tttatttatgctttnatttattat 27 |||||||||||||| ||||||||| Sbjct: 125617 tttatttatgcttttatttattat 125594
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 tcttcatcttggcgttgagct 225 ||||||||||||||||||||| Sbjct: 1387681 tcttcatcttggcgttgagct 1387661
>dbj|AB024600.1| Nicotiana tabacum mRNA for NtPRp27, complete cds Length = 1560 Score = 42.1 bits (21), Expect = 1.5 Identities = 60/73 (82%) Strand = Plus / Minus Query: 282 tcgtacccctgatcccaccggtctccctgccccggcttcacccagtgccccggcgcgaac 341 ||||| ||||| ||||| ||||| ||||| || || ||||||||||| | || ||||| Sbjct: 1163 tcgtagccctggtcccatcggtcgccctggcctggtttcacccagtggctaggtgcgaaa 1104 Query: 342 ccggccttgagcc 354 ||||| ||||||| Sbjct: 1103 ccggctttgagcc 1091
>gb|AC146760.13| Medicago truncatula clone mth2-174d3, complete sequence Length = 122316 Score = 40.1 bits (20), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 3 ttttatttatgctttnatttatt 25 ||||||||||||||| ||||||| Sbjct: 3149 ttttatttatgctttaatttatt 3171
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 cgagaatctgcgcgaagaag 188 |||||||||||||||||||| Sbjct: 1947702 cgagaatctgcgcgaagaag 1947721
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 tcttgccgagaatctgcgcg 182 |||||||||||||||||||| Sbjct: 3357779 tcttgccgagaatctgcgcg 3357760
>emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4 Length = 343050 Score = 40.1 bits (20), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 6 tatttatgctttnatttattata 28 |||||||||||| |||||||||| Sbjct: 139598 tatttatgcttttatttattata 139576
>emb|BX247871.7| Zebrafish DNA sequence from clone CH211-190P8, complete sequence Length = 145789 Score = 40.1 bits (20), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 4 tttatttatgctttnatttatta 26 |||||||||||||| |||||||| Sbjct: 97150 tttatttatgcttttatttatta 97172
>gb|AC149875.2| Xenopus tropicalis clone CH216-151P11, complete sequence Length = 155394 Score = 40.1 bits (20), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 6 tatttatgctttnatttattata 28 |||||||||||| |||||||||| Sbjct: 94288 tatttatgctttcatttattata 94310
>emb|BX649476.3| Zebrafish DNA sequence from clone DKEY-13I19 in linkage group 4, complete sequence Length = 126315 Score = 40.1 bits (20), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 3 ttttatttatgctttnatttatt 25 ||||||||||||||| ||||||| Sbjct: 75167 ttttatttatgcttttatttatt 75189
>gb|AC158383.3| Mus musculus BAC clone RP23-135O16 from chromosome 12, complete sequence Length = 196552 Score = 40.1 bits (20), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 3 ttttatttatgctttnatttatt 25 ||||||||||||||| ||||||| Sbjct: 127488 ttttatttatgctttcatttatt 127466
>gb|U65940.1|SSU65940 Streptomyces sp. cyt P-450-9-deoxo-FK506 hydroxylase (fkbD) and 31-O-demethyl-FK506 methyltransferase (fkbM) genes, complete cds Length = 2500 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tgcgcgaagaagtcgtcggt 196 |||||||||||||||||||| Sbjct: 737 tgcgcgaagaagtcgtcggt 718
>gb|AC140941.1| Gallus gallus BAC clone TAM32-50C3 from chromosome ul, complete sequence Length = 116265 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 tcggtgtacccactcttcat 211 |||||||||||||||||||| Sbjct: 55286 tcggtgtacccactcttcat 55267 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,255,379 Number of Sequences: 3902068 Number of extensions: 2255379 Number of successful extensions: 49598 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 49314 Number of HSP's gapped (non-prelim): 270 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)