ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19p13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF079526.1|AF079526 Triticum aestivum secretory protein (WAS-... 482 e-133
2emb|Y14202.1|HVY14202 Hordeum vulgare mRNA for hypothetical prot... 381 e-102
3gb|AY108161.1| Zea mays PCO128916 mRNA sequence 361 1e-96
4gb|U32431.1|TAU32431 Triticum aestivum mRNA, clone WCI-5, comple... 172 6e-40
5ref|NM_197124.1| Oryza sativa (japonica cultivar-group) putative... 147 3e-32
6gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 geno... 147 3e-32
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 147 3e-32
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 147 3e-32
9emb|Y14201.1|HVY14201 Hordeum vulgare mRNA for hypothetical prot... 103 5e-19
10ref|NM_197125.1| Oryza sativa (japonica cultivar-group) putative... 80 7e-12
11dbj|AK100816.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
12dbj|AK059607.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
13ref|NM_197123.1| Oryza sativa (japonica cultivar-group) putative... 62 2e-06
14emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 46 0.093
15emb|CR318624.8| Zebrafish DNA sequence from clone CH211-227I15 i... 42 1.5
16gb|AE014299.1| Shewanella oneidensis MR-1, complete genome 42 1.5
17dbj|AB024600.1| Nicotiana tabacum mRNA for NtPRp27, complete cds 42 1.5
18gb|AC146760.13| Medicago truncatula clone mth2-174d3, complete s... 40 5.7
19gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 5.7
20gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 5.7
21emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chrom... 40 5.7
22emb|BX247871.7| Zebrafish DNA sequence from clone CH211-190P8, c... 40 5.7
23gb|AC149875.2| Xenopus tropicalis clone CH216-151P11, complete s... 40 5.7
24emb|BX649476.3| Zebrafish DNA sequence from clone DKEY-13I19 in ... 40 5.7
25gb|AC158383.3| Mus musculus BAC clone RP23-135O16 from chromosom... 40 5.7
26gb|U65940.1|SSU65940 Streptomyces sp. cyt P-450-9-deoxo-FK506 hy... 40 5.7
27gb|AC140941.1| Gallus gallus BAC clone TAM32-50C3 from chromosom... 40 5.7

>gb|AF079526.1|AF079526 Triticum aestivum secretory protein (WAS-2) mRNA, complete cds
          Length = 894

 Score =  482 bits (243), Expect = e-133
 Identities = 298/314 (94%), Gaps = 2/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 115 ttcaggctccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaa 174
           ||||| ||| |||||||| ||||||||||  ||||||||||||||||||||| |||||||
Sbjct: 716 ttcagcctctaaacttggctttgtagtccttccacagctgctgcacgttcttcccgagaa 657

                                                                       
Query: 175 tctgcgcgaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacga 234
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 656 tctgcgcgaagaagtcgtcggtgtacccactcttcatcttggcgttgacgtgcgcgacga 597

                                                                       
Query: 235 acccgggcttcagtgagtcgcagtagtcgaggaacctcgccgtgacgtcgtacccctgat 294
           |||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 596 acccgggcttgagcgagtcgcagtagtcaaggaacctcgccgtgacgtcgtacccctgat 537

                                                                       
Query: 295 cccaccggtctccctgccccggcttcacccagtgccccggcgcgaacccggccttgagcc 354
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cccaccggtcgccctgccccggcttcacccagtgccccggcgcgaacccggccttgagcc 477

                                                                       
Query: 355 gcacgtagtcggcgatcccctcgatgagcccgccgttcgccttgccct-gcccgttccac 413
           ||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct: 476 gcacgtagtcggcgatcccctcgatgagcccgccgttcgcc-tgccctgggccgttccac 418

                         
Query: 414 tgncacacgtgcgt 427
           || |||||||||||
Sbjct: 417 tgccacacgtgcgt 404



to top

>emb|Y14202.1|HVY14202 Hordeum vulgare mRNA for hypothetical protein, clone pBH6-17
          Length = 859

 Score =  381 bits (192), Expect = e-102
 Identities = 281/311 (90%)
 Strand = Plus / Minus

                                                                       
Query: 114 attcaggctccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgaga 173
           |||||| |||| ||||||| ||||||||||  |||||||||||| |||||||| ||||||
Sbjct: 720 attcagcctccgaacttggctttgtagtccttccacagctgctggacgttcttcccgaga 661

                                                                       
Query: 174 atctgcgcgaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacg 233
           |||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 660 atctgcgcgaagaaatcatcgctgtacccgctcttcatcttggcgttgagctgcgcgacg 601

                                                                       
Query: 234 aacccgggcttcagtgagtcgcagtagtcgaggaacctcgccgtgacgtcgtacccctga 293
           ||||||||| | || ||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 600 aacccgggcatgagcgagtcgcagtagtcgaggaacctcgccgtgatgtcgtatccctga 541

                                                                       
Query: 294 tcccaccggtctccctgccccggcttcacccagtgccccggcgcgaacccggccttgagc 353
           ||||||||||| ||   |||| ||  |  ||||||||||||||| | |||||||||||||
Sbjct: 540 tcccaccggtcgccgctcccctgcggcctccagtgccccggcgccagcccggccttgagc 481

                                                                       
Query: 354 cgcacgtagtcggcgatcccctcgatgagcccgccgttcgccttgccctgcccgttccac 413
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 480 cgcacgtagtcggcgatcccctcgatgagcccgccgttcgccgtgccccgcccgttccac 421

                      
Query: 414 tgncacacgtg 424
           || ||||||||
Sbjct: 420 tgccacacgtg 410



to top

>gb|AY108161.1| Zea mays PCO128916 mRNA sequence
          Length = 648

 Score =  361 bits (182), Expect = 1e-96
 Identities = 265/293 (90%)
 Strand = Plus / Minus

                                                                       
Query: 135 ttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgcgaagaagtcgtcg 194
           ||||||||| ||||||||||||||||| ||||||| || ||||| |||||||||||||||
Sbjct: 353 ttgtagtcctgccacagctgctgcacggtcttgcccaggatctgggcgaagaagtcgtcg 294

                                                                       
Query: 195 gtgtacccactcttcatcttggcgttgagctgcgcgacgaacccgggcttcagtgagtcg 254
           ||||| ||   ||||||||||||||||||| |||||||||| || ||||| || ||||||
Sbjct: 293 gtgtagccgtccttcatcttggcgttgagcagcgcgacgaagcccggcttgagcgagtcg 234

                                                                       
Query: 255 cagtagtcgaggaacctcgccgtgacgtcgtacccctgatcccaccggtctccctgcccc 314
           |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 233 cagtagtccaggaacctcgccgtgacgtcgtacccctggtcccaccggtccccctgcccc 174

                                                                       
Query: 315 ggcttcacccagtgccccggcgcgaacccggccttgagccgcacgtagtcggcgatcccc 374
           |||| ||||||||| ||||||||| |||| ||||| ||||| |||||||||||||| |||
Sbjct: 173 ggctgcacccagtggcccggcgcgtaccccgccttcagccggacgtagtcggcgatgccc 114

                                                                
Query: 375 tcgatgagcccgccgttcgccttgccctgcccgttccactgncacacgtgcgt 427
           |||||||| ||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct: 113 tcgatgaggccgccgttcgcctggccctgcccgtcccactgccacacgtgcgt 61



to top

>gb|U32431.1|TAU32431 Triticum aestivum mRNA, clone WCI-5, complete cds
          Length = 862

 Score =  172 bits (87), Expect = 6e-40
 Identities = 233/282 (82%)
 Strand = Plus / Minus

                                                                       
Query: 146 ccacagctgctgcacgttcttgccgagaatctgcgcgaagaagtcgtcggtgtacccact 205
           ||||||||| | |||| |||| || || |||||| ||||| |||||||| |||| ||   
Sbjct: 672 ccacagctggtccacgctcttccccaggatctgcacgaagtagtcgtcgctgtatccgtc 613

                                                                       
Query: 206 cttcatcttggcgttgagctgcgcgacgaacccgggcttcagtgagtcgcagtagtcgag 265
           ||| | ||||  ||| | || ||| |||||||||| ||| || |||||||||||||| ||
Sbjct: 612 cttgagcttgctgttcatctccgccacgaacccggccttgagggagtcgcagtagtccag 553

                                                                       
Query: 266 gaacctcgccgtgacgtcgtacccctgatcccaccggtctccctgccccggcttcaccca 325
           |||| | ||||| |||||||||||||  ||||| ||||| ||   |||| ||     |||
Sbjct: 552 gaacttggccgtcacgtcgtacccctcgtcccaacggtcgccgctcccctgcgggcgcca 493

                                                                       
Query: 326 gtgccccggcgcgaacccggccttgagccgcacgtagtcggcgatcccctcgatgagccc 385
           ||||  ||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gtgcgtcggcgcgaggtcggccttgagccgcacgtagtcggcgatcccctcgatgagccc 433

                                                     
Query: 386 gccgttcgccttgccctgcccgttccactgncacacgtgcgt 427
           |||||| ||| ||||||||||||||||||| |||||||||||
Sbjct: 432 gccgtttgccctgccctgcccgttccactgccacacgtgcgt 391



to top

>ref|NM_197124.1| Oryza sativa (japonica cultivar-group) putative secretory protein
           (OSJNBa0051D19.12), mRNA
          Length = 783

 Score =  147 bits (74), Expect = 3e-32
 Identities = 125/142 (88%)
 Strand = Plus / Minus

                                                                       
Query: 249 gagtcgcagtagtcgaggaacctcgccgtgacgtcgtacccctgatcccaccggtctccc 308
           ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct: 644 gagtcgcagtagtcgaggaacctcgccgtcacgtcgtacccctggtcccaccggtcgccc 585

                                                                       
Query: 309 tgccccggcttcacccagtgccccggcgcgaacccggccttgagccgcacgtagtcggcg 368
           ||||| |||| ||||||||||  ||||||| | |||||    || || ||| ||||||||
Sbjct: 584 tgcccgggctgcacccagtgcggcggcgcgtagccggcgcgcagtcggacgaagtcggcg 525

                                 
Query: 369 atcccctcgatgagcccgccgt 390
           ||||||||||| ||||||||||
Sbjct: 524 atcccctcgatcagcccgccgt 503



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                     
Query: 181 cgaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaaccc 238
           |||||||||||||| |||| ||   |||||||||| ||||||||||||| ||||||||
Sbjct: 718 cgaagaagtcgtcgctgtatccgtccttcatcttgccgttgagctgcgccacgaaccc 661



to top

>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete
             sequence
          Length = 131984

 Score =  147 bits (74), Expect = 3e-32
 Identities = 125/142 (88%)
 Strand = Plus / Minus

                                                                         
Query: 249   gagtcgcagtagtcgaggaacctcgccgtgacgtcgtacccctgatcccaccggtctccc 308
             ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct: 90380 gagtcgcagtagtcgaggaacctcgccgtcacgtcgtacccctggtcccaccggtcgccc 90321

                                                                         
Query: 309   tgccccggcttcacccagtgccccggcgcgaacccggccttgagccgcacgtagtcggcg 368
             ||||| |||| ||||||||||  ||||||| | |||||    || || ||| ||||||||
Sbjct: 90320 tgcccgggctgcacccagtgcggcggcgcgtagccggcgcgcagtcggacgaagtcggcg 90261

                                   
Query: 369   atcccctcgatgagcccgccgt 390
             ||||||||||| ||||||||||
Sbjct: 90260 atcccctcgatcagcccgccgt 90239



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 127/156 (81%)
 Strand = Plus / Plus

                                                                         
Query: 122   tccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgc 181
             |||| ||||||  ||||| ||| ||||||||||||||||| |||| |||   |||||| |
Sbjct: 86579 tccatacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcac 86638

                                                                         
Query: 182   gaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaacccggg 241
             |||| ||||| || |||||||| |||||| ||| ||||| || |  || |||||||| ||
Sbjct: 86639 gaagtagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctgg 86698

                                                 
Query: 242   cttcagtgagtcgcagtagtcgaggaacctcgccgt 277
             ||| |    |||||||||||||| ||||||||||||
Sbjct: 86699 cttgacgctgtcgcagtagtcgaagaacctcgccgt 86734



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 115/143 (80%)
 Strand = Plus / Minus

                                                                         
Query: 135   ttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgcgaagaagtcgtcg 194
             ||||| ||| ||||||||||||||||| |||| |||   |||||| ||||| ||||| | 
Sbjct: 92853 ttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaagtagtcgaca 92794

                                                                         
Query: 195   gtgtacccactcttcatcttggcgttgagctgcgcgacgaacccgggcttcagtgagtcg 254
              |||||||   ||||| |||||| ||||  |  ||||||||||| ||||| |    ||||
Sbjct: 92793 ttgtacccgtccttcaacttggcattgatgtcggcgacgaaccctggcttgacgctgtcg 92734

                                    
Query: 255   cagtagtcgaggaacctcgccgt 277
             |||||||||| ||||||||||||
Sbjct: 92733 cagtagtcgaagaacctcgccgt 92711



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 181   cgaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaaccc 238
             |||||||||||||| |||| ||   |||||||||| ||||||||||||| ||||||||
Sbjct: 90454 cgaagaagtcgtcgctgtatccgtccttcatcttgccgttgagctgcgccacgaaccc 90397



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 351   agccgcacgtagtcggcgatcccctcg 377
             ||||||||| |||||||||||||||||
Sbjct: 92637 agccgcacgaagtcggcgatcccctcg 92611



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  147 bits (74), Expect = 3e-32
 Identities = 125/142 (88%)
 Strand = Plus / Plus

                                                                            
Query: 249      gagtcgcagtagtcgaggaacctcgccgtgacgtcgtacccctgatcccaccggtctccc 308
                ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct: 18122748 gagtcgcagtagtcgaggaacctcgccgtcacgtcgtacccctggtcccaccggtcgccc 18122807

                                                                            
Query: 309      tgccccggcttcacccagtgccccggcgcgaacccggccttgagccgcacgtagtcggcg 368
                ||||| |||| ||||||||||  ||||||| | |||||    || || ||| ||||||||
Sbjct: 18122808 tgcccgggctgcacccagtgcggcggcgcgtagccggcgcgcagtcggacgaagtcggcg 18122867

                                      
Query: 369      atcccctcgatgagcccgccgt 390
                ||||||||||| ||||||||||
Sbjct: 18122868 atcccctcgatcagcccgccgt 18122889



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 127/156 (81%)
 Strand = Plus / Minus

                                                                            
Query: 122      tccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgc 181
                |||| ||||||  ||||| ||| ||||||||||||||||| |||| |||   |||||| |
Sbjct: 18126549 tccatacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcac 18126490

                                                                            
Query: 182      gaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaacccggg 241
                |||| ||||| || |||||||| |||||| ||| ||||| || |  || |||||||| ||
Sbjct: 18126489 gaagtagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctgg 18126430

                                                    
Query: 242      cttcagtgagtcgcagtagtcgaggaacctcgccgt 277
                ||| |    |||||||||||||| ||||||||||||
Sbjct: 18126429 cttgacgctgtcgcagtagtcgaagaacctcgccgt 18126394



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 115/143 (80%)
 Strand = Plus / Plus

                                                                            
Query: 135      ttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgcgaagaagtcgtcg 194
                ||||| ||| ||||||||||||||||| |||| |||   |||||| ||||| ||||| | 
Sbjct: 18120275 ttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaagtagtcgaca 18120334

                                                                            
Query: 195      gtgtacccactcttcatcttggcgttgagctgcgcgacgaacccgggcttcagtgagtcg 254
                 |||||||   ||||| |||||| ||||  |  ||||||||||| ||||| |    ||||
Sbjct: 18120335 ttgtacccgtccttcaacttggcattgatgtcggcgacgaaccctggcttgacgctgtcg 18120394

                                       
Query: 255      cagtagtcgaggaacctcgccgt 277
                |||||||||| ||||||||||||
Sbjct: 18120395 cagtagtcgaagaacctcgccgt 18120417



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                          
Query: 181      cgaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaaccc 238
                |||||||||||||| |||| ||   |||||||||| ||||||||||||| ||||||||
Sbjct: 18122674 cgaagaagtcgtcgctgtatccgtccttcatcttgccgttgagctgcgccacgaaccc 18122731



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 351      agccgcacgtagtcggcgatcccctcg 377
                ||||||||| |||||||||||||||||
Sbjct: 18120491 agccgcacgaagtcggcgatcccctcg 18120517



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  147 bits (74), Expect = 3e-32
 Identities = 125/142 (88%)
 Strand = Plus / Plus

                                                                            
Query: 249      gagtcgcagtagtcgaggaacctcgccgtgacgtcgtacccctgatcccaccggtctccc 308
                ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct: 18132001 gagtcgcagtagtcgaggaacctcgccgtcacgtcgtacccctggtcccaccggtcgccc 18132060

                                                                            
Query: 309      tgccccggcttcacccagtgccccggcgcgaacccggccttgagccgcacgtagtcggcg 368
                ||||| |||| ||||||||||  ||||||| | |||||    || || ||| ||||||||
Sbjct: 18132061 tgcccgggctgcacccagtgcggcggcgcgtagccggcgcgcagtcggacgaagtcggcg 18132120

                                      
Query: 369      atcccctcgatgagcccgccgt 390
                ||||||||||| ||||||||||
Sbjct: 18132121 atcccctcgatcagcccgccgt 18132142



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 127/156 (81%)
 Strand = Plus / Minus

                                                                            
Query: 122      tccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgc 181
                |||| ||||||  ||||| ||| ||||||||||||||||| |||| |||   |||||| |
Sbjct: 18135802 tccatacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcac 18135743

                                                                            
Query: 182      gaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaacccggg 241
                |||| ||||| || |||||||| |||||| ||| ||||| || |  || |||||||| ||
Sbjct: 18135742 gaagtagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctgg 18135683

                                                    
Query: 242      cttcagtgagtcgcagtagtcgaggaacctcgccgt 277
                ||| |    |||||||||||||| ||||||||||||
Sbjct: 18135682 cttgacgctgtcgcagtagtcgaagaacctcgccgt 18135647



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 115/143 (80%)
 Strand = Plus / Plus

                                                                            
Query: 135      ttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgcgaagaagtcgtcg 194
                ||||| ||| ||||||||||||||||| |||| |||   |||||| ||||| ||||| | 
Sbjct: 18129528 ttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaagtagtcgaca 18129587

                                                                            
Query: 195      gtgtacccactcttcatcttggcgttgagctgcgcgacgaacccgggcttcagtgagtcg 254
                 |||||||   ||||| |||||| ||||  |  ||||||||||| ||||| |    ||||
Sbjct: 18129588 ttgtacccgtccttcaacttggcattgatgtcggcgacgaaccctggcttgacgctgtcg 18129647

                                       
Query: 255      cagtagtcgaggaacctcgccgt 277
                |||||||||| ||||||||||||
Sbjct: 18129648 cagtagtcgaagaacctcgccgt 18129670



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                          
Query: 181      cgaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaaccc 238
                |||||||||||||| |||| ||   |||||||||| ||||||||||||| ||||||||
Sbjct: 18131927 cgaagaagtcgtcgctgtatccgtccttcatcttgccgttgagctgcgccacgaaccc 18131984



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 351      agccgcacgtagtcggcgatcccctcg 377
                ||||||||| |||||||||||||||||
Sbjct: 18129744 agccgcacgaagtcggcgatcccctcg 18129770



to top

>emb|Y14201.1|HVY14201 Hordeum vulgare mRNA for hypothetical protein, clone pBH6-12
          Length = 829

 Score =  103 bits (52), Expect = 5e-19
 Identities = 174/212 (82%), Gaps = 2/212 (0%)
 Strand = Plus / Minus

                                                                       
Query: 168 ccgagaatctgcgcgaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgc 227
           ||||| |||||| ||||| |||||||| |||| ||   ||| | |||| |||| | || |
Sbjct: 640 ccgaggatctgcacgaagtagtcgtcgttgtagccgtccttgagcttgccgttcatctcc 581

                                                                       
Query: 228 gcgacgaacccgggcttcagtgagtcgcagtagtcgaggaacctcgccgtgacgtcgtac 287
           || ||||||||||||||  | |||||||||||||| |||||||| ||||| |||||||| 
Sbjct: 580 gccacgaacccgggcttgcgcgagtcgcagtagtccaggaacctggccgtcacgtcgtat 521

                                                                       
Query: 288 ccctgatcccaccggtctccctgc-cccggcttcacccagtgccccggcgcgaacccggc 346
           ||||  ||||||||| || ||  | |||  ||||||||||| | |||   || |||||||
Sbjct: 520 ccctcgtcccaccgg-ctgccgccgccctccttcacccagttcgccgctacgtacccggc 462

                                           
Query: 347 cttgagccgcacgtagtcggcgatcccctcga 378
           |||||||||||||||||| |||||||||||||
Sbjct: 461 cttgagccgcacgtagtccgcgatcccctcga 430



to top

>ref|NM_197125.1| Oryza sativa (japonica cultivar-group) putative basic secretory
           protein (OSJNBa0051D19.25), mRNA
          Length = 690

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 127/156 (81%)
 Strand = Plus / Minus

                                                                       
Query: 122 tccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgc 181
           |||| ||||||  ||||| ||| ||||||||||||||||| |||| |||   |||||| |
Sbjct: 684 tccatacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcac 625

                                                                       
Query: 182 gaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaacccggg 241
           |||| ||||| || |||||||| |||||| ||| ||||| || |  || |||||||| ||
Sbjct: 624 gaagtagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctgg 565

                                               
Query: 242 cttcagtgagtcgcagtagtcgaggaacctcgccgt 277
           ||| |    |||||||||||||| ||||||||||||
Sbjct: 564 cttgacgctgtcgcagtagtcgaagaacctcgccgt 529



to top

>dbj|AK100816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122C23, full
           insert sequence
          Length = 856

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 127/156 (81%)
 Strand = Plus / Minus

                                                                       
Query: 122 tccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgc 181
           |||| ||||||  ||||| ||| ||||||||||||||||| |||| |||   |||||| |
Sbjct: 704 tccatacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcac 645

                                                                       
Query: 182 gaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaacccggg 241
           |||| ||||| || |||||||| |||||| ||| ||||| || |  || |||||||| ||
Sbjct: 644 gaagtagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctgg 585

                                               
Query: 242 cttcagtgagtcgcagtagtcgaggaacctcgccgt 277
           ||| |    |||||||||||||| ||||||||||||
Sbjct: 584 cttgacgctgtcgcagtagtcgaagaacctcgccgt 549



to top

>dbj|AK059607.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F02, full
           insert sequence
          Length = 852

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 127/156 (81%)
 Strand = Plus / Minus

                                                                       
Query: 122 tccaaacttggatttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgc 181
           |||| ||||||  ||||| ||| ||||||||||||||||| |||| |||   |||||| |
Sbjct: 700 tccatacttggccttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcac 641

                                                                       
Query: 182 gaagaagtcgtcggtgtacccactcttcatcttggcgttgagctgcgcgacgaacccggg 241
           |||| ||||| || |||||||| |||||| ||| ||||| || |  || |||||||| ||
Sbjct: 640 gaagtagtcgacgttgtacccattcttcagcttagcgttcaggtcggcaacgaaccctgg 581

                                               
Query: 242 cttcagtgagtcgcagtagtcgaggaacctcgccgt 277
           ||| |    |||||||||||||| ||||||||||||
Sbjct: 580 cttgacgctgtcgcagtagtcgaagaacctcgccgt 545



to top

>ref|NM_197123.1| Oryza sativa (japonica cultivar-group) putative secretory protein
           (OSJNBa0051D19.13), mRNA
          Length = 702

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 115/143 (80%)
 Strand = Plus / Minus

                                                                       
Query: 135 ttgtagtcccgccacagctgctgcacgttcttgccgagaatctgcgcgaagaagtcgtcg 194
           ||||| ||| ||||||||||||||||| |||| |||   |||||| ||||| ||||| | 
Sbjct: 683 ttgtaatcctgccacagctgctgcacggtcttcccggtgatctgcacgaagtagtcgaca 624

                                                                       
Query: 195 gtgtacccactcttcatcttggcgttgagctgcgcgacgaacccgggcttcagtgagtcg 254
            |||||||   ||||| |||||| ||||  |  ||||||||||| ||||| |    ||||
Sbjct: 623 ttgtacccgtccttcaacttggcattgatgtcggcgacgaaccctggcttgacgctgtcg 564

                                  
Query: 255 cagtagtcgaggaacctcgccgt 277
           |||||||||| ||||||||||||
Sbjct: 563 cagtagtcgaagaacctcgccgt 541



 Score = 46.1 bits (23), Expect = 0.093
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 351 agccgcacgtagtcggcgatcccctcg 377
           ||||||||| |||||||||||||||||
Sbjct: 467 agccgcacgaagtcggcgatcccctcg 441



to top

>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 320     cacccagtgccccggcgcgaacc 342
               |||||||||||||||||||||||
Sbjct: 3952396 cacccagtgccccggcgcgaacc 3952418



to top

>emb|CR318624.8| Zebrafish DNA sequence from clone CH211-227I15 in linkage group 24,
              complete sequence
          Length = 170084

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 4      tttatttatgctttnatttattat 27
              |||||||||||||| |||||||||
Sbjct: 125617 tttatttatgcttttatttattat 125594



to top

>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome
          Length = 4969803

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 205     tcttcatcttggcgttgagct 225
               |||||||||||||||||||||
Sbjct: 1387681 tcttcatcttggcgttgagct 1387661



to top

>dbj|AB024600.1| Nicotiana tabacum mRNA for NtPRp27, complete cds
          Length = 1560

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                        
Query: 282  tcgtacccctgatcccaccggtctccctgccccggcttcacccagtgccccggcgcgaac 341
            ||||| ||||| ||||| ||||| ||||| || || ||||||||||| |  || ||||| 
Sbjct: 1163 tcgtagccctggtcccatcggtcgccctggcctggtttcacccagtggctaggtgcgaaa 1104

                         
Query: 342  ccggccttgagcc 354
            ||||| |||||||
Sbjct: 1103 ccggctttgagcc 1091



to top

>gb|AC146760.13| Medicago truncatula clone mth2-174d3, complete sequence
          Length = 122316

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 3    ttttatttatgctttnatttatt 25
            ||||||||||||||| |||||||
Sbjct: 3149 ttttatttatgctttaatttatt 3171



to top

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 169     cgagaatctgcgcgaagaag 188
               ||||||||||||||||||||
Sbjct: 1947702 cgagaatctgcgcgaagaag 1947721



to top

>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 163     tcttgccgagaatctgcgcg 182
               ||||||||||||||||||||
Sbjct: 3357779 tcttgccgagaatctgcgcg 3357760



to top

>emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4
          Length = 343050

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 6      tatttatgctttnatttattata 28
              |||||||||||| ||||||||||
Sbjct: 139598 tatttatgcttttatttattata 139576



to top

>emb|BX247871.7| Zebrafish DNA sequence from clone CH211-190P8, complete sequence
          Length = 145789

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 4     tttatttatgctttnatttatta 26
             |||||||||||||| ||||||||
Sbjct: 97150 tttatttatgcttttatttatta 97172



to top

>gb|AC149875.2| Xenopus tropicalis clone CH216-151P11, complete sequence
          Length = 155394

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 6     tatttatgctttnatttattata 28
             |||||||||||| ||||||||||
Sbjct: 94288 tatttatgctttcatttattata 94310



to top

>emb|BX649476.3| Zebrafish DNA sequence from clone DKEY-13I19 in linkage group 4,
             complete sequence
          Length = 126315

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 3     ttttatttatgctttnatttatt 25
             ||||||||||||||| |||||||
Sbjct: 75167 ttttatttatgcttttatttatt 75189



to top

>gb|AC158383.3| Mus musculus BAC clone RP23-135O16 from chromosome 12, complete sequence
          Length = 196552

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 3      ttttatttatgctttnatttatt 25
              ||||||||||||||| |||||||
Sbjct: 127488 ttttatttatgctttcatttatt 127466



to top

>gb|U65940.1|SSU65940 Streptomyces sp. cyt P-450-9-deoxo-FK506 hydroxylase (fkbD) and
           31-O-demethyl-FK506 methyltransferase (fkbM) genes,
           complete cds
          Length = 2500

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 177 tgcgcgaagaagtcgtcggt 196
           ||||||||||||||||||||
Sbjct: 737 tgcgcgaagaagtcgtcggt 718



to top

>gb|AC140941.1| Gallus gallus BAC clone TAM32-50C3 from chromosome ul, complete
             sequence
          Length = 116265

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   tcggtgtacccactcttcat 211
             ||||||||||||||||||||
Sbjct: 55286 tcggtgtacccactcttcat 55267


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,255,379
Number of Sequences: 3902068
Number of extensions: 2255379
Number of successful extensions: 49598
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 49314
Number of HSP's gapped (non-prelim): 270
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top