ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19p12 |
|---|---|
| Clone Library Name | barley_pub |
>Y005_SYNY3 (Q55680) Hypothetical protein sll0005| Length = 681 Score = 92.4 bits (228), Expect = 1e-18 Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 8/194 (4%) Frame = -3 Query: 721 LALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDEKFRWNRLENLLVQGRQD 542 +A+ DPNFKVL+ +YPY AKRLLTD + LR +L ELLFK+ FRWNRLENLL + Sbjct: 458 IAIGIDPNFKVLSKAYPYIAKRLLTDQSEELRTSLKELLFKEGSFRWNRLENLLRNAKNS 517 Query: 541 REFVAKDALQPVLKLLLGPDGENLRVLVVKEAVRVTEAI---TFGTLIGSYNAAPEFLKP 371 F L + LL G+ +R +V E V + + T+ + + FL Sbjct: 518 PGFDFDYVLNEATEFLLSDRGQFIRDRLVAELVNSIDQLGRNTWQQVSHNIQERISFLGD 577 Query: 370 LISNGNPAGPFKISDVERE----QMLELRDTVLRIWGLSRSSDTFDPSLLQPIV-QVLQE 206 L + A K V + Q E + +W + + + FDP P++ Q++ Sbjct: 578 LGNGNGKAHQTKTIKVVPQPAIAQQEETWQHLQNLWQILKETPGFDPLKFVPVLSQIIVN 637 Query: 205 REARVFGSRIAGGV 164 +R G ++A G+ Sbjct: 638 PTSRRMGQQVAEGL 651
>Y1919_SYNY3 (P73121) Hypothetical protein slr1919| Length = 566 Score = 79.7 bits (195), Expect = 8e-15 Identities = 41/85 (48%), Positives = 54/85 (63%) Frame = -3 Query: 721 LALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALIELLFKDEKFRWNRLENLLVQGRQD 542 LAL DPNFK++ +YPY A+RLLT +P LR LI++LFK+ KF+W RLEN+L R D Sbjct: 425 LALSLDPNFKIVEVAYPYVARRLLTGESPQLRRQLIDVLFKNGKFQWQRLENMLSIARSD 484 Query: 541 REFVAKDALQPVLKLLLGPDGENLR 467 +F Q L+ L +G LR Sbjct: 485 TKFDLLPTAQLGLQFLFSEEGLYLR 509
>PYRG_CORGL (Q8NQL7) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 554 Score = 32.7 bits (73), Expect = 1.2 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = -3 Query: 274 GLSRSSDT-FDPSLLQPIVQVLQEREARVFGSRIAGG 167 GL ++S T FDP+ QP++ ++E++A V G GG Sbjct: 409 GLEQASSTEFDPAATQPVIATMEEQKAAVSGEADLGG 445
>AROB_CAUCR (Q9A434) 3-dehydroquinate synthase (EC 4.2.3.4)| Length = 370 Score = 32.7 bits (73), Expect = 1.2 Identities = 21/55 (38%), Positives = 30/55 (54%) Frame = -3 Query: 643 PNPYLRDALIELLFKDEKFRWNRLENLLVQGRQDREFVAKDALQPVLKLLLGPDG 479 P P+ DALI +D+K + +L +L +G D FVAKD + LK L +G Sbjct: 315 PEPFSADALIAHCGQDKKAQGGKLTFVLARGIGD-AFVAKDVDRAALKAFLVEEG 368
>IF3_STAAW (P65141) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 1.5 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -3 Query: 532 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 371 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 370 LISNGNPAGPFKISDVEREQMLELRDTVLRI 278 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAAS (Q6G8P5) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 1.5 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -3 Query: 532 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 371 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 370 LISNGNPAGPFKISDVEREQMLELRDTVLRI 278 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAAN (P65140) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 1.5 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -3 Query: 532 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 371 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 370 LISNGNPAGPFKISDVEREQMLELRDTVLRI 278 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAAM (P65139) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 1.5 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -3 Query: 532 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 371 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 370 LISNGNPAGPFKISDVEREQMLELRDTVLRI 278 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAAC (Q5HF92) Translation initiation factor IF-3| Length = 175 Score = 32.3 bits (72), Expect = 1.5 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -3 Query: 532 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 371 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 370 LISNGNPAGPFKISDVEREQMLELRDTVLRI 278 ++ G FK ++E+ ++ + ++ + Sbjct: 59 PVARIMDYGKFKFEQQKKEKEMKKKQKIINV 89
>IF3_STAES (Q8CS75) Translation initiation factor IF-3| Length = 175 Score = 32.0 bits (71), Expect = 2.0 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -3 Query: 532 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 371 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINEKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 370 LISNGNPAGPFKISDVEREQMLELRDTVLRI 278 ++ G +K ++E+ ++ + V+ + Sbjct: 59 PVARIMDYGKYKFEQQKKEKEMKKKQKVINV 89
>IF3_STAEQ (Q5HNM3) Translation initiation factor IF-3| Length = 175 Score = 32.0 bits (71), Expect = 2.0 Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = -3 Query: 532 VAKDALQPVLKL------LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKP 371 +AKD Q K+ L+G DGE + V +EA+ + E + ++ + NA KP Sbjct: 4 IAKDQTQINEKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KP 58 Query: 370 LISNGNPAGPFKISDVEREQMLELRDTVLRI 278 ++ G +K ++E+ ++ + V+ + Sbjct: 59 PVARIMDYGKYKFEQQKKEKEMKKKQKVINV 89
>KCND1_HUMAN (Q9NSA2) Potassium voltage-gated channel subfamily D member 1| (Voltage-gated potassium channel subunit Kv4.1) Length = 647 Score = 31.2 bits (69), Expect = 3.4 Identities = 18/34 (52%), Positives = 21/34 (61%) Frame = +3 Query: 108 GAGGILSSCCNKRAARRWETPPAIREPNTRASRS 209 G G +LSSCC +RA RR AIR N+ AS S Sbjct: 524 GPGSLLSSCCPRRAKRR-----AIRLANSTASVS 552
>TRMD_MYCPU (Q98Q98) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)| (M1G-methyltransferase) (tRNA [GM37] methyltransferase) Length = 225 Score = 30.8 bits (68), Expect = 4.4 Identities = 21/77 (27%), Positives = 37/77 (48%) Frame = -3 Query: 505 LKLLLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKPLISNGNPAGPFKISD 326 LK+L+ P G+ + KE V+ ITF + G Y E + I G + ++ Sbjct: 78 LKILVSPQGKLFNQEIAKEIVKNHSEITF--VSGRYEGFDERILNYIDIELSIGDYILTG 135 Query: 325 VEREQMLELRDTVLRIW 275 E M+ + D+++R+W Sbjct: 136 GELPSMV-MADSIIRLW 151
>IF3_THET2 (Q9ACJ8) Translation initiation factor IF-3| Length = 171 Score = 30.4 bits (67), Expect = 5.8 Identities = 12/52 (23%), Positives = 30/52 (57%) Frame = -3 Query: 541 REFVAKDALQPVLKLLLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAP 386 +E++ + ++ ++GPDG+ L ++ +EA+R+ + + ++ NA P Sbjct: 2 KEYLTNERIRAKQVRVVGPDGKQLGIMDTREALRLAQEMDLDLVLVGPNADP 53
>GLMS_IDILO (Q5QZH5) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 609 Score = 30.0 bits (66), Expect = 7.5 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = +1 Query: 166 HLLRYENQTHGLHALVAPVQLAAKDLDQRYQRISKDPIF*EQCLVAPTFVP 318 HL+ +E +THG L+A V+ A + L+ Y + D + E+ +VA + P Sbjct: 130 HLIHHERKTHG--DLLAAVKSAVRQLEGAYGTVVMDTQYPERLVVARSGSP 178
>RNF39_MACMU (Q5TM52) RING finger protein 39| Length = 420 Score = 30.0 bits (66), Expect = 7.5 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +3 Query: 129 SCCNKRAARRWETPPAIREPNTRAS-RSCSTCTIGCKR 239 S C ARRW TPPA +T AS +C C + C R Sbjct: 106 SFCRACLARRWGTPPA---TDTEASPTACPCCGLPCPR 140
>LSM7_YEAST (P53905) U6 snRNA-associated Sm-like protein LSm3| Length = 107 Score = 29.6 bits (65), Expect = 9.8 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Frame = -3 Query: 628 RDALIELL-FKDEKFRWNRLENLLVQG-RQDREFVAKDALQPVLKLLLGPDGENLRVLVV 455 R+A+++L +KD K R + LV G + + + L ++ + PD EN L+ Sbjct: 16 REAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELIS 75 Query: 454 KEAVRVTEAITFGTLIGSYNAA 389 K A ++ + GT++ S ++A Sbjct: 76 KNARKLGLTVIRGTILVSLSSA 97
>IF3_ENTFA (Q837C9) Translation initiation factor IF-3| Length = 173 Score = 29.6 bits (65), Expect = 9.8 Identities = 22/99 (22%), Positives = 45/99 (45%) Frame = -3 Query: 541 REFVAKDALQPVLKLLLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKPLIS 362 ++ + D ++ L+G DGE L V EA+++ E+ ++ + A KP ++ Sbjct: 5 KDMMVNDGIRARELRLIGQDGEQLGVKTKAEALQIAESANLDLVLVAPGA-----KPPVA 59 Query: 361 NGNPAGPFKISDVEREQMLELRDTVLRIWGLSRSSDTFD 245 G F+ ++E+ + V+ + + R S T D Sbjct: 60 RIMDYGKFRFEQQKKEREARKKQKVINVKEV-RLSPTID 97
>RNF39_PANTR (Q7YR31) RING finger protein 39 (Protein HZFw)| Length = 420 Score = 29.6 bits (65), Expect = 9.8 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +3 Query: 129 SCCNKRAARRWETPPAIREPNTRAS-RSCSTCTIGCKR 239 S C ARRW TPPA T AS +C C + C R Sbjct: 106 SFCRACLARRWGTPPA---TGTEASPTACPCCGLPCPR 140
>RNF39_HUMAN (Q9H2S5) RING finger protein 39 (Protein HZFw)| Length = 420 Score = 29.6 bits (65), Expect = 9.8 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +3 Query: 129 SCCNKRAARRWETPPAIREPNTRAS-RSCSTCTIGCKR 239 S C ARRW TPPA T AS +C C + C R Sbjct: 106 SFCRACLARRWGTPPA---TGTEASPTACPCCGLPCPR 140 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,083,073 Number of Sequences: 219361 Number of extensions: 2255645 Number of successful extensions: 6605 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 6352 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6605 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7422931207 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
