ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19p07 |
|---|---|
| Clone Library Name | barley_pub |
>NFU1_YEAST (P32860) NifU-like protein, mitochondrial precursor| Length = 256 Score = 42.7 bits (99), Expect = 6e-04 Identities = 19/43 (44%), Positives = 30/43 (69%) Frame = -3 Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377 L+GAC+SC SS T+ GIE +LK + D +K++ Q+ D +Q+ Sbjct: 192 LQGACTSCSSSEVTLKYGIESMLKH-YVDEVKEVIQIMDPEQE 233
>HIRP5_MOUSE (Q9QZ23) HIRA-interacting protein 5 (mHIRIP5)| Length = 199 Score = 38.9 bits (89), Expect = 0.008 Identities = 17/46 (36%), Positives = 30/46 (65%) Frame = -3 Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 368 L+G+C+SCPSS T+ GI+ +L + + ++ + QV D D+ E+ Sbjct: 150 LQGSCTSCPSSIITLKSGIQNML-QFYIPEVEGVEQVMDDDESDEK 194
>NIFU_ANASL (P33179) Nitrogen fixation protein nifU (Fragment)| Length = 112 Score = 36.6 bits (83), Expect = 0.040 Identities = 14/31 (45%), Positives = 22/31 (70%) Frame = -3 Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAI 413 L+GAC SCPSST T+ + IE L+++ ++ Sbjct: 77 LQGACGSCPSSTATLKIAIESRLRDRINPSL 107
>HIRP5_HUMAN (Q9UMS0) HIRA-interacting protein 5| Length = 196 Score = 36.2 bits (82), Expect = 0.052 Identities = 16/46 (34%), Positives = 29/46 (63%) Frame = -3 Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 368 L+G+C+SCPSS T+ GI+ +L + + ++ + QV D + +E Sbjct: 148 LQGSCTSCPSSIITLKNGIQNML-QFYIPEVEGVEQVMDDESDEKE 192
>YH9J_SCHPO (Q9UUB8) NifU-like protein C1709.19c| Length = 260 Score = 34.3 bits (77), Expect = 0.20 Identities = 15/43 (34%), Positives = 28/43 (65%) Frame = -3 Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377 L GAC +C SS T+ GI+++LK + ++++ QV D +++ Sbjct: 196 LRGACRTCSSSAVTLKNGIQQMLKHYIPE-VENVVQVLDPEEE 237
>NIFU_ANASP (P20628) Nitrogen fixation protein nifU| Length = 300 Score = 33.5 bits (75), Expect = 0.34 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = -3 Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAI 413 L+GAC SC SST T+ + IE L+++ ++ Sbjct: 265 LQGACGSCSSSTATLKIAIESRLRDRINPSL 295
>NIFU_ANAAZ (Q43885) Nitrogen fixation protein nifU| Length = 300 Score = 33.5 bits (75), Expect = 0.34 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = -3 Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAI 413 L+GAC SC SST T+ + IE L+++ ++ Sbjct: 265 LQGACGSCSSSTATLKIAIESRLRDRINPSL 295
>MYF5_BOVIN (P17667) Myogenic factor 5 (Myf-5)| Length = 255 Score = 32.0 bits (71), Expect = 0.98 Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 20/144 (13%) Frame = -3 Query: 496 ACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDILRPAI 317 AC +C +TTM+ ++E+ +K + Q FD ++ T P ++ILR AI Sbjct: 71 ACKACKRKSTTMDRRKAATMRER--RRLKKVNQAFDTLKRCTTTNPNQRLPKVEILRNAI 128 Query: 316 ANYGGSVEVL--------AVDGEDCLVK-------YDGPESIGSGVKAAIKEKF-----P 197 E+L ++ G+ C DG S + + F P Sbjct: 129 RYIESLQELLREQVENYYSLPGQSCSEPTSPTSSCSDGMPECNSPIWSRKSSSFDSVYCP 188 Query: 196 DITNVVFTQ*STGRLA*CHSSAVN 125 D+ NV T S+ C SS V+ Sbjct: 189 DVPNVYATDKSSLSSLDCLSSIVD 212
>Y2378_PSEPK (Q88KB2) Hypothetical protein PP2378| Length = 194 Score = 31.6 bits (70), Expect = 1.3 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -3 Query: 499 GACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377 G C C + T+ GIER L E+ + +K +R V D Q+ Sbjct: 150 GGCQGCGQADVTLKEGIERTLLERIPE-LKGVRDVTDHSQK 189
>NIFU_AZOCH (P23121) Nitrogen fixation protein nifU| Length = 309 Score = 31.6 bits (70), Expect = 1.3 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 22/106 (20%) Frame = -3 Query: 499 GACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPE--------------ETT 362 G CS+C + GIERVL E+ + G ++ + T Sbjct: 170 GGCSAC-------HEGIERVLSEELAPVARSSSCADQGQEEVKVLAPSRLRSWPRRLRAT 222 Query: 361 PEAVNRH--------LDILRPAIANYGGSVEVLAVDGEDCLVKYDG 248 P+ N L +RP + G VE++ VDG++ VK G Sbjct: 223 PKLSNLQRIRRIETVLAAIRPTLQRDKGDVELIDVDGKNIYVKLTG 268
>DCUA_HELPJ (Q9ZLC0) Anaerobic C4-dicarboxylate transporter dcuA| Length = 443 Score = 30.4 bits (67), Expect = 2.9 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = +3 Query: 171 WVNTTFVMSGNFSLMAAFTPLPMDSGPSYLTR 266 W+ TTF+ + + FT L +DS P+YL R Sbjct: 174 WIPTTFLACMLTAFVMGFTDLKLDSDPNYLER 205
>CHEA_BACSU (P29072) Chemotaxis protein cheA (EC 2.7.13.3)| Length = 671 Score = 30.0 bits (66), Expect = 3.7 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Frame = -3 Query: 451 IERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNR------HLDILRPAIANYGGSVEV 290 +ERV+ EK + ++D Q+++ P +T + ++ LD+++ + + GGSV V Sbjct: 463 LERVITEKEAETLED-NQIYELIFAPGFSTADQISDISGRGVGLDVVKNKLESLGGSVSV 521 Query: 289 LAVDGEDCLVKYDGP 245 + +G+ L P Sbjct: 522 KSAEGQGSLFSIQLP 536
>NIFU_AZOBR (Q43909) Nitrogen fixation protein nifU| Length = 310 Score = 30.0 bits (66), Expect = 3.7 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%) Frame = -3 Query: 328 RPAIANYGGSVEVLAVDGEDCLVKYDG-----PESIGS--GVKAAIKEKFPDITNV 182 RP I GG VE++ +DG+D V+ G +S G+ GV+A + E + V Sbjct: 245 RPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAGTMMGVQAKLVEALGEFVRV 300 Score = 29.3 bits (64), Expect = 6.4 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -3 Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAIK 410 L GACS C S TM MG++ L E G+ ++ Sbjct: 269 LTGACSGCSQSAGTM-MGVQAKLVEALGEFVR 299
>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1| Length = 881 Score = 29.6 bits (65), Expect = 4.9 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 15/57 (26%) Frame = -2 Query: 488 QLSQLDDDDEHGHRASAQGE---------------VR*RHQGHPPGVRRGPATRRDD 363 ++ Q DDD+E AQG R G PPGVR G +T +D Sbjct: 616 RIQQFDDDEEEEDEEEAQGSGESDGEDGAWQGSQLARGARLGQPPGVRSGGSTDSED 672
>DCUA_HELPY (O25425) Anaerobic C4-dicarboxylate transporter dcuA| Length = 443 Score = 29.6 bits (65), Expect = 4.9 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +3 Query: 171 WVNTTFVMSGNFSLMAAFTPLPMDSGPSYLTR 266 W+ TTF+ + + FT L +DS P YL R Sbjct: 174 WIPTTFLACMLTAFIMGFTDLKLDSDPHYLER 205
>DNAJ2_SYNY3 (P73097) Chaperone protein dnaJ 2| Length = 307 Score = 29.3 bits (64), Expect = 6.4 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -3 Query: 325 PAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEK-FPD 194 P+ A GG++EV+ +DG LVK P + +G K + +K FP+ Sbjct: 220 PSEAILGGAIEVMTIDG---LVKMTVPAGLKNGQKLRLAKKGFPN 261
>NIFU_PLEBO (Q00241) Nitrogen fixation protein nifU (Fragment)| Length = 205 Score = 29.3 bits (64), Expect = 6.4 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -3 Query: 505 LEGACSSCPSSTTTMNMGIERVLK 434 L+GAC SC SST T+ +E L+ Sbjct: 170 LKGACGSCASSTATLKDAVEAKLR 193
>CAPS_CAEBR (Q60PC0) Calcium-dependent secretion activator (Uncoordinated| protein 31) Length = 1261 Score = 29.3 bits (64), Expect = 6.4 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -3 Query: 334 ILRPAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEKFPDI 191 ++ PA+ +Y + V G C+ GPE +G+ V KEKF +I Sbjct: 699 LIDPALIHYSFAFCASHVHGNRCMPDRQGPEGVGT-VTLEEKEKFQEI 745
>HIS4_LEPIN (Q8F9R5) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 241 Score = 29.3 bits (64), Expect = 6.4 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -3 Query: 337 DILRPAIANYGGSVEVLAVDGEDCLVKYDGPE 242 D+L+ A+ NYG V+AVD D +VK G E Sbjct: 111 DLLKYALDNYGKERVVVAVDARDGIVKIAGWE 142
>HIS4_LEPIC (P62354) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 241 Score = 29.3 bits (64), Expect = 6.4 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = -3 Query: 337 DILRPAIANYGGSVEVLAVDGEDCLVKYDGPE 242 D+L+ A+ NYG V+AVD D +VK G E Sbjct: 111 DLLKYALDNYGKERVVVAVDARDGIVKIAGWE 142
>CAPS_CAEEL (Q23658) Calcium-dependent secretion activator (Uncoordinated| protein 31) Length = 1260 Score = 29.3 bits (64), Expect = 6.4 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -3 Query: 334 ILRPAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEKFPDI 191 ++ PA+ +Y + V G C+ GPE +G+ V KEKF +I Sbjct: 701 LIDPALIHYSFAFCASHVHGNRCMPDRQGPEGVGT-VTLEEKEKFQEI 747
>PYRB_ACIAD (Q6FCR5) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 338 Score = 29.3 bits (64), Expect = 6.4 Identities = 21/78 (26%), Positives = 35/78 (44%) Frame = -3 Query: 439 LKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDILRPAIANYGGSVEVLAVDGEDCLV 260 L K D +KD + Q E A++ + R YG + E LA+ DC+V Sbjct: 225 LFNKMDDGVKDCDVIIALRIQNERIDSPALSSQAEFYRM----YGLNQERLALAKPDCIV 280 Query: 259 KYDGPESIGSGVKAAIKE 206 + GP + G + ++I + Sbjct: 281 MHPGPMNRGVEIDSSIAD 298
>Y2735_PSESM (Q881Z4) Hypothetical protein PSPTO2735| Length = 197 Score = 29.3 bits (64), Expect = 6.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -3 Query: 499 GACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377 G C C + T+ GIER L E+ + + +R V D Q+ Sbjct: 153 GGCQGCGQADVTLKEGIERTLLERIPE-LSGVRDVTDHTQK 192
>TR4_RAT (P55094) Orphan nuclear receptor TR4| Length = 596 Score = 28.9 bits (63), Expect = 8.3 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 18/96 (18%) Frame = -3 Query: 385 DQQPEETTPEAVNRHLDILRPAI----------------ANYGGSVEVLAVDGEDCLVKY 254 + QPE+ + + R D L A+ A+ GGS+ V++ D +++ Sbjct: 298 EMQPEDQSASEITRAFDTLAKALNTTDSASPPSLADGIDASGGGSIHVISRDQSTPIIEV 357 Query: 253 DGPESIGSGV--KAAIKEKFPDITNVVFTQ*STGRL 152 +GP + V K + P+ NV + S RL Sbjct: 358 EGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRL 393
>TR4_MOUSE (P49117) Orphan nuclear receptor TR4 (Orphan nuclear receptor TAK1)| Length = 596 Score = 28.9 bits (63), Expect = 8.3 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 18/96 (18%) Frame = -3 Query: 385 DQQPEETTPEAVNRHLDILRPAI----------------ANYGGSVEVLAVDGEDCLVKY 254 + QPE+ + + R D L A+ A+ GGS+ V++ D +++ Sbjct: 298 EMQPEDQSASEITRAFDTLAKALNTTDSASPPSLADGIDASGGGSIHVISRDQSTPIIEV 357 Query: 253 DGPESIGSGV--KAAIKEKFPDITNVVFTQ*STGRL 152 +GP + V K + P+ NV + S RL Sbjct: 358 EGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRL 393
>MYF5_HUMAN (P13349) Myogenic factor 5 (Myf-5)| Length = 255 Score = 28.9 bits (63), Expect = 8.3 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 20/144 (13%) Frame = -3 Query: 496 ACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDILRPAI 317 AC +C +TTM+ ++E+ +K + Q F+ ++ T P ++ILR AI Sbjct: 71 ACKACKRKSTTMDRRKAATMRER--RRLKKVNQAFETLKRCTTTNPNQRLPKVEILRNAI 128 Query: 316 ANYGGSVEVL--------AVDGEDCLVK-------YDGPESIGSGVKAAIKEKF-----P 197 E+L ++ G+ C DG S V + F P Sbjct: 129 RYIESLQELLREQVENYYSLPGQSCSEPTSPTSNCSDGMPECNSPVWSRKSSTFDSIYCP 188 Query: 196 DITNVVFTQ*STGRLA*CHSSAVN 125 D++NV T ++ C S+ V+ Sbjct: 189 DVSNVYATDKNSLSSLDCLSNIVD 212
>UPPS_PYRKO (Q5JGE1) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP| synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) Length = 264 Score = 28.9 bits (63), Expect = 8.3 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = -3 Query: 475 STTTMNMGIERVLKEKFGDAIKDI-RQVFDGDQQPEETTPEAVNRHL 338 S +N+ + + + DA+++I R V +G +PE+ EA+ R+L Sbjct: 154 SNYNLNIALAYGGRSEIADAVREIVRDVLEGKIKPEDIDEEAIKRYL 200
>SYFA_NITWN (Q3SWK7) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 369 Score = 28.9 bits (63), Expect = 8.3 Identities = 13/25 (52%), Positives = 19/25 (76%) Frame = -3 Query: 457 MGIERVLKEKFGDAIKDIRQVFDGD 383 MGI+R+ K+G I D+RQ+F+GD Sbjct: 324 MGIDRITMLKYG--IADLRQLFEGD 346
>RGS3_CAEEL (Q18312) Regulator of G protein signaling rgs-3| Length = 363 Score = 28.9 bits (63), Expect = 8.3 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Frame = -3 Query: 502 EGACSSCPSSTTTMNMGI--ERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDIL 329 +G+ + SS ++ + E + E+F AIK++R++ + DQ P E +L+ L Sbjct: 169 QGSINLSSSSMKSLRNAVASETLDMEEFAPAIKEVRRLLENDQFPRFRRSELYLEYLEEL 228 Query: 328 RP 323 P Sbjct: 229 LP 230
>RFCS_METKA (Q8TZC4) Replication factor C small subunit (RFC small subunit)| (Clamp loader small subunit) [Contains: Mkn RFC intein] Length = 635 Score = 28.9 bits (63), Expect = 8.3 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = -3 Query: 421 DAIKDI-RQVFDGDQQPEETTPEAVN 347 D ++ + R++FD D+ PEE PE VN Sbjct: 574 DVVRQVHREIFDMDEIPEEAIPELVN 599
>ASNB_BACSU (P54420) Asparagine synthetase [glutamine-hydrolyzing] 1 (EC| 6.3.5.4) Length = 632 Score = 28.9 bits (63), Expect = 8.3 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = +2 Query: 341 VPVHRLRRRLFGLLVPVEHLA--DVLDGVTELLLEHSLDAHVH 463 VP H L R+ G VP+ H ++ + V ++ E DA++H Sbjct: 535 VPEHVLNRKKLGFPVPIRHWLKNEMNEWVRNIIQESQTDAYIH 577 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,379,290 Number of Sequences: 219361 Number of extensions: 1665789 Number of successful extensions: 5411 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 5197 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5406 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
