ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19p07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NFU1_YEAST (P32860) NifU-like protein, mitochondrial precursor 43 6e-04
2HIRP5_MOUSE (Q9QZ23) HIRA-interacting protein 5 (mHIRIP5) 39 0.008
3NIFU_ANASL (P33179) Nitrogen fixation protein nifU (Fragment) 37 0.040
4HIRP5_HUMAN (Q9UMS0) HIRA-interacting protein 5 36 0.052
5YH9J_SCHPO (Q9UUB8) NifU-like protein C1709.19c 34 0.20
6NIFU_ANASP (P20628) Nitrogen fixation protein nifU 33 0.34
7NIFU_ANAAZ (Q43885) Nitrogen fixation protein nifU 33 0.34
8MYF5_BOVIN (P17667) Myogenic factor 5 (Myf-5) 32 0.98
9Y2378_PSEPK (Q88KB2) Hypothetical protein PP2378 32 1.3
10NIFU_AZOCH (P23121) Nitrogen fixation protein nifU 32 1.3
11DCUA_HELPJ (Q9ZLC0) Anaerobic C4-dicarboxylate transporter dcuA 30 2.9
12CHEA_BACSU (P29072) Chemotaxis protein cheA (EC 2.7.13.3) 30 3.7
13NIFU_AZOBR (Q43909) Nitrogen fixation protein nifU 30 3.7
14SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1 30 4.9
15DCUA_HELPY (O25425) Anaerobic C4-dicarboxylate transporter dcuA 30 4.9
16DNAJ2_SYNY3 (P73097) Chaperone protein dnaJ 2 29 6.4
17NIFU_PLEBO (Q00241) Nitrogen fixation protein nifU (Fragment) 29 6.4
18CAPS_CAEBR (Q60PC0) Calcium-dependent secretion activator (Uncoo... 29 6.4
19HIS4_LEPIN (Q8F9R5) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylami... 29 6.4
20HIS4_LEPIC (P62354) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylami... 29 6.4
21CAPS_CAEEL (Q23658) Calcium-dependent secretion activator (Uncoo... 29 6.4
22PYRB_ACIAD (Q6FCR5) Aspartate carbamoyltransferase (EC 2.1.3.2) ... 29 6.4
23Y2735_PSESM (Q881Z4) Hypothetical protein PSPTO2735 29 6.4
24TR4_RAT (P55094) Orphan nuclear receptor TR4 29 8.3
25TR4_MOUSE (P49117) Orphan nuclear receptor TR4 (Orphan nuclear r... 29 8.3
26MYF5_HUMAN (P13349) Myogenic factor 5 (Myf-5) 29 8.3
27UPPS_PYRKO (Q5JGE1) Undecaprenyl pyrophosphate synthetase (EC 2.... 29 8.3
28SYFA_NITWN (Q3SWK7) Phenylalanyl-tRNA synthetase alpha chain (EC... 29 8.3
29RGS3_CAEEL (Q18312) Regulator of G protein signaling rgs-3 29 8.3
30RFCS_METKA (Q8TZC4) Replication factor C small subunit (RFC smal... 29 8.3
31ASNB_BACSU (P54420) Asparagine synthetase [glutamine-hydrolyzing... 29 8.3

>NFU1_YEAST (P32860) NifU-like protein, mitochondrial precursor|
          Length = 256

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 19/43 (44%), Positives = 30/43 (69%)
 Frame = -3

Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377
           L+GAC+SC SS  T+  GIE +LK  + D +K++ Q+ D +Q+
Sbjct: 192 LQGACTSCSSSEVTLKYGIESMLKH-YVDEVKEVIQIMDPEQE 233



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>HIRP5_MOUSE (Q9QZ23) HIRA-interacting protein 5 (mHIRIP5)|
          Length = 199

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = -3

Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 368
           L+G+C+SCPSS  T+  GI+ +L + +   ++ + QV D D+  E+
Sbjct: 150 LQGSCTSCPSSIITLKSGIQNML-QFYIPEVEGVEQVMDDDESDEK 194



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>NIFU_ANASL (P33179) Nitrogen fixation protein nifU (Fragment)|
          Length = 112

 Score = 36.6 bits (83), Expect = 0.040
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -3

Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAI 413
           L+GAC SCPSST T+ + IE  L+++   ++
Sbjct: 77  LQGACGSCPSSTATLKIAIESRLRDRINPSL 107



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>HIRP5_HUMAN (Q9UMS0) HIRA-interacting protein 5|
          Length = 196

 Score = 36.2 bits (82), Expect = 0.052
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = -3

Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 368
           L+G+C+SCPSS  T+  GI+ +L + +   ++ + QV D +   +E
Sbjct: 148 LQGSCTSCPSSIITLKNGIQNML-QFYIPEVEGVEQVMDDESDEKE 192



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>YH9J_SCHPO (Q9UUB8) NifU-like protein C1709.19c|
          Length = 260

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 15/43 (34%), Positives = 28/43 (65%)
 Frame = -3

Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377
           L GAC +C SS  T+  GI+++LK    + ++++ QV D +++
Sbjct: 196 LRGACRTCSSSAVTLKNGIQQMLKHYIPE-VENVVQVLDPEEE 237



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>NIFU_ANASP (P20628) Nitrogen fixation protein nifU|
          Length = 300

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAI 413
           L+GAC SC SST T+ + IE  L+++   ++
Sbjct: 265 LQGACGSCSSSTATLKIAIESRLRDRINPSL 295



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>NIFU_ANAAZ (Q43885) Nitrogen fixation protein nifU|
          Length = 300

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -3

Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAI 413
           L+GAC SC SST T+ + IE  L+++   ++
Sbjct: 265 LQGACGSCSSSTATLKIAIESRLRDRINPSL 295



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>MYF5_BOVIN (P17667) Myogenic factor 5 (Myf-5)|
          Length = 255

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 20/144 (13%)
 Frame = -3

Query: 496 ACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDILRPAI 317
           AC +C   +TTM+      ++E+    +K + Q FD  ++   T P      ++ILR AI
Sbjct: 71  ACKACKRKSTTMDRRKAATMRER--RRLKKVNQAFDTLKRCTTTNPNQRLPKVEILRNAI 128

Query: 316 ANYGGSVEVL--------AVDGEDCLVK-------YDGPESIGSGVKAAIKEKF-----P 197
                  E+L        ++ G+ C           DG     S + +     F     P
Sbjct: 129 RYIESLQELLREQVENYYSLPGQSCSEPTSPTSSCSDGMPECNSPIWSRKSSSFDSVYCP 188

Query: 196 DITNVVFTQ*STGRLA*CHSSAVN 125
           D+ NV  T  S+     C SS V+
Sbjct: 189 DVPNVYATDKSSLSSLDCLSSIVD 212



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>Y2378_PSEPK (Q88KB2) Hypothetical protein PP2378|
          Length = 194

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 499 GACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377
           G C  C  +  T+  GIER L E+  + +K +R V D  Q+
Sbjct: 150 GGCQGCGQADVTLKEGIERTLLERIPE-LKGVRDVTDHSQK 189



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>NIFU_AZOCH (P23121) Nitrogen fixation protein nifU|
          Length = 309

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 22/106 (20%)
 Frame = -3

Query: 499 GACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPE--------------ETT 362
           G CS+C       + GIERVL E+     +       G ++ +                T
Sbjct: 170 GGCSAC-------HEGIERVLSEELAPVARSSSCADQGQEEVKVLAPSRLRSWPRRLRAT 222

Query: 361 PEAVNRH--------LDILRPAIANYGGSVEVLAVDGEDCLVKYDG 248
           P+  N          L  +RP +    G VE++ VDG++  VK  G
Sbjct: 223 PKLSNLQRIRRIETVLAAIRPTLQRDKGDVELIDVDGKNIYVKLTG 268



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>DCUA_HELPJ (Q9ZLC0) Anaerobic C4-dicarboxylate transporter dcuA|
          Length = 443

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 171 WVNTTFVMSGNFSLMAAFTPLPMDSGPSYLTR 266
           W+ TTF+     + +  FT L +DS P+YL R
Sbjct: 174 WIPTTFLACMLTAFVMGFTDLKLDSDPNYLER 205



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>CHEA_BACSU (P29072) Chemotaxis protein cheA (EC 2.7.13.3)|
          Length = 671

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
 Frame = -3

Query: 451 IERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNR------HLDILRPAIANYGGSVEV 290
           +ERV+ EK  + ++D  Q+++    P  +T + ++        LD+++  + + GGSV V
Sbjct: 463 LERVITEKEAETLED-NQIYELIFAPGFSTADQISDISGRGVGLDVVKNKLESLGGSVSV 521

Query: 289 LAVDGEDCLVKYDGP 245
            + +G+  L     P
Sbjct: 522 KSAEGQGSLFSIQLP 536



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>NIFU_AZOBR (Q43909) Nitrogen fixation protein nifU|
          Length = 310

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = -3

Query: 328 RPAIANYGGSVEVLAVDGEDCLVKYDG-----PESIGS--GVKAAIKEKFPDITNV 182
           RP I   GG VE++ +DG+D  V+  G      +S G+  GV+A + E   +   V
Sbjct: 245 RPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAGTMMGVQAKLVEALGEFVRV 300



 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 505 LEGACSSCPSSTTTMNMGIERVLKEKFGDAIK 410
           L GACS C  S  TM MG++  L E  G+ ++
Sbjct: 269 LTGACSGCSQSAGTM-MGVQAKLVEALGEFVR 299



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>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1|
          Length = 881

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 15/57 (26%)
 Frame = -2

Query: 488 QLSQLDDDDEHGHRASAQGE---------------VR*RHQGHPPGVRRGPATRRDD 363
           ++ Q DDD+E      AQG                 R    G PPGVR G +T  +D
Sbjct: 616 RIQQFDDDEEEEDEEEAQGSGESDGEDGAWQGSQLARGARLGQPPGVRSGGSTDSED 672



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>DCUA_HELPY (O25425) Anaerobic C4-dicarboxylate transporter dcuA|
          Length = 443

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 171 WVNTTFVMSGNFSLMAAFTPLPMDSGPSYLTR 266
           W+ TTF+     + +  FT L +DS P YL R
Sbjct: 174 WIPTTFLACMLTAFIMGFTDLKLDSDPHYLER 205



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>DNAJ2_SYNY3 (P73097) Chaperone protein dnaJ 2|
          Length = 307

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 325 PAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEK-FPD 194
           P+ A  GG++EV+ +DG   LVK   P  + +G K  + +K FP+
Sbjct: 220 PSEAILGGAIEVMTIDG---LVKMTVPAGLKNGQKLRLAKKGFPN 261



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>NIFU_PLEBO (Q00241) Nitrogen fixation protein nifU (Fragment)|
          Length = 205

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 505 LEGACSSCPSSTTTMNMGIERVLK 434
           L+GAC SC SST T+   +E  L+
Sbjct: 170 LKGACGSCASSTATLKDAVEAKLR 193



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>CAPS_CAEBR (Q60PC0) Calcium-dependent secretion activator (Uncoordinated|
           protein 31)
          Length = 1261

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 334 ILRPAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEKFPDI 191
           ++ PA+ +Y  +     V G  C+    GPE +G+ V    KEKF +I
Sbjct: 699 LIDPALIHYSFAFCASHVHGNRCMPDRQGPEGVGT-VTLEEKEKFQEI 745



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>HIS4_LEPIN (Q8F9R5) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 241

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 337 DILRPAIANYGGSVEVLAVDGEDCLVKYDGPE 242
           D+L+ A+ NYG    V+AVD  D +VK  G E
Sbjct: 111 DLLKYALDNYGKERVVVAVDARDGIVKIAGWE 142



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>HIS4_LEPIC (P62354) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase)
          Length = 241

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 337 DILRPAIANYGGSVEVLAVDGEDCLVKYDGPE 242
           D+L+ A+ NYG    V+AVD  D +VK  G E
Sbjct: 111 DLLKYALDNYGKERVVVAVDARDGIVKIAGWE 142



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>CAPS_CAEEL (Q23658) Calcium-dependent secretion activator (Uncoordinated|
           protein 31)
          Length = 1260

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 334 ILRPAIANYGGSVEVLAVDGEDCLVKYDGPESIGSGVKAAIKEKFPDI 191
           ++ PA+ +Y  +     V G  C+    GPE +G+ V    KEKF +I
Sbjct: 701 LIDPALIHYSFAFCASHVHGNRCMPDRQGPEGVGT-VTLEEKEKFQEI 747



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>PYRB_ACIAD (Q6FCR5) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate|
           transcarbamylase) (ATCase)
          Length = 338

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = -3

Query: 439 LKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDILRPAIANYGGSVEVLAVDGEDCLV 260
           L  K  D +KD   +     Q E     A++   +  R     YG + E LA+   DC+V
Sbjct: 225 LFNKMDDGVKDCDVIIALRIQNERIDSPALSSQAEFYRM----YGLNQERLALAKPDCIV 280

Query: 259 KYDGPESIGSGVKAAIKE 206
            + GP + G  + ++I +
Sbjct: 281 MHPGPMNRGVEIDSSIAD 298



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>Y2735_PSESM (Q881Z4) Hypothetical protein PSPTO2735|
          Length = 197

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 499 GACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 377
           G C  C  +  T+  GIER L E+  + +  +R V D  Q+
Sbjct: 153 GGCQGCGQADVTLKEGIERTLLERIPE-LSGVRDVTDHTQK 192



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>TR4_RAT (P55094) Orphan nuclear receptor TR4|
          Length = 596

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
 Frame = -3

Query: 385 DQQPEETTPEAVNRHLDILRPAI----------------ANYGGSVEVLAVDGEDCLVKY 254
           + QPE+ +   + R  D L  A+                A+ GGS+ V++ D    +++ 
Sbjct: 298 EMQPEDQSASEITRAFDTLAKALNTTDSASPPSLADGIDASGGGSIHVISRDQSTPIIEV 357

Query: 253 DGPESIGSGV--KAAIKEKFPDITNVVFTQ*STGRL 152
           +GP    + V  K  +    P+  NV +   S  RL
Sbjct: 358 EGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRL 393



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>TR4_MOUSE (P49117) Orphan nuclear receptor TR4 (Orphan nuclear receptor TAK1)|
          Length = 596

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
 Frame = -3

Query: 385 DQQPEETTPEAVNRHLDILRPAI----------------ANYGGSVEVLAVDGEDCLVKY 254
           + QPE+ +   + R  D L  A+                A+ GGS+ V++ D    +++ 
Sbjct: 298 EMQPEDQSASEITRAFDTLAKALNTTDSASPPSLADGIDASGGGSIHVISRDQSTPIIEV 357

Query: 253 DGPESIGSGV--KAAIKEKFPDITNVVFTQ*STGRL 152
           +GP    + V  K  +    P+  NV +   S  RL
Sbjct: 358 EGPLLSDTHVTFKLTMPSPMPEYLNVHYICESASRL 393



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>MYF5_HUMAN (P13349) Myogenic factor 5 (Myf-5)|
          Length = 255

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 20/144 (13%)
 Frame = -3

Query: 496 ACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDILRPAI 317
           AC +C   +TTM+      ++E+    +K + Q F+  ++   T P      ++ILR AI
Sbjct: 71  ACKACKRKSTTMDRRKAATMRER--RRLKKVNQAFETLKRCTTTNPNQRLPKVEILRNAI 128

Query: 316 ANYGGSVEVL--------AVDGEDCLVK-------YDGPESIGSGVKAAIKEKF-----P 197
                  E+L        ++ G+ C           DG     S V +     F     P
Sbjct: 129 RYIESLQELLREQVENYYSLPGQSCSEPTSPTSNCSDGMPECNSPVWSRKSSTFDSIYCP 188

Query: 196 DITNVVFTQ*STGRLA*CHSSAVN 125
           D++NV  T  ++     C S+ V+
Sbjct: 189 DVSNVYATDKNSLSSLDCLSNIVD 212



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>UPPS_PYRKO (Q5JGE1) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 264

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 475 STTTMNMGIERVLKEKFGDAIKDI-RQVFDGDQQPEETTPEAVNRHL 338
           S   +N+ +    + +  DA+++I R V +G  +PE+   EA+ R+L
Sbjct: 154 SNYNLNIALAYGGRSEIADAVREIVRDVLEGKIKPEDIDEEAIKRYL 200



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>SYFA_NITWN (Q3SWK7) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS)
          Length = 369

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -3

Query: 457 MGIERVLKEKFGDAIKDIRQVFDGD 383
           MGI+R+   K+G  I D+RQ+F+GD
Sbjct: 324 MGIDRITMLKYG--IADLRQLFEGD 346



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>RGS3_CAEEL (Q18312) Regulator of G protein signaling rgs-3|
          Length = 363

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -3

Query: 502 EGACSSCPSSTTTMNMGI--ERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDIL 329
           +G+ +   SS  ++   +  E +  E+F  AIK++R++ + DQ P     E    +L+ L
Sbjct: 169 QGSINLSSSSMKSLRNAVASETLDMEEFAPAIKEVRRLLENDQFPRFRRSELYLEYLEEL 228

Query: 328 RP 323
            P
Sbjct: 229 LP 230



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>RFCS_METKA (Q8TZC4) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit) [Contains: Mkn RFC intein]
          Length = 635

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 421 DAIKDI-RQVFDGDQQPEETTPEAVN 347
           D ++ + R++FD D+ PEE  PE VN
Sbjct: 574 DVVRQVHREIFDMDEIPEEAIPELVN 599



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>ASNB_BACSU (P54420) Asparagine synthetase [glutamine-hydrolyzing] 1 (EC|
           6.3.5.4)
          Length = 632

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 341 VPVHRLRRRLFGLLVPVEHLA--DVLDGVTELLLEHSLDAHVH 463
           VP H L R+  G  VP+ H    ++ + V  ++ E   DA++H
Sbjct: 535 VPEHVLNRKKLGFPVPIRHWLKNEMNEWVRNIIQESQTDAYIH 577


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,379,290
Number of Sequences: 219361
Number of extensions: 1665789
Number of successful extensions: 5411
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 5197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5406
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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