ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19p02 |
|---|---|
| Clone Library Name | barley_pub |
>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)| Length = 1168 Score = 31.6 bits (70), Expect = 1.9 Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Frame = +2 Query: 275 RRDVVPLIPPVSLPRLHPVPRREP-GLEPHVVGDP 376 RRD P PP LPR P P P GLEP V P Sbjct: 40 RRDCRPPPPPTGLPRGPPPPPSPPRGLEPPVASGP 74
>UVRA_STRAW (Q829X3) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 1009 Score = 30.8 bits (68), Expect = 3.2 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = +2 Query: 164 VLAENLREEVVGVPTLHLGVELR---DEPGLQ*VAVVEEPRR 280 V+AE EEV GVPT H G LR D + A V+ PR+ Sbjct: 919 VVAEGTPEEVAGVPTSHTGKFLREILDADRISDAASVKAPRK 960
>CNGC5_ARATH (Q8RWS9) Probable cyclic nucleotide-gated ion channel 5 (AtCNGC5)| (Cyclic nucleotide- and calmodulin-regulated ion channel 5) Length = 717 Score = 30.4 bits (67), Expect = 4.2 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -3 Query: 260 LRLTEARVRRAAQRQDEEWVHRRLLRADSRQ 168 +RL E RV+R R E+W+H R+L D R+ Sbjct: 424 IRLEEMRVKR---RDSEQWMHHRMLPQDLRE 451
>OXAA_BUCAI (P57131) Membrane protein oxaA| Length = 532 Score = 30.0 bits (66), Expect = 5.4 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = +3 Query: 480 MLATYWALRWMPLALVKATPLMSSTTRVTALTGLRSP 590 ML Y+A+ W+P L K T SS TA+ G +SP Sbjct: 247 MLQQYFAVAWIPDNLGKNTIYTSSLDHDTAVIGYKSP 283
>UVRA_STRCO (Q9Z507) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 1014 Score = 29.6 bits (65), Expect = 7.1 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +2 Query: 164 VLAENLREEVVGVPTLHLGVELRDEPGLQ*V---AVVEEPRR 280 V+AE E+V GVP H G LRD G V A V PR+ Sbjct: 919 VVAEGTPEQVAGVPASHTGKFLRDVLGADRVSDAAPVTRPRK 960
>YCF2_LYCES (P61242) Protein ycf2| Length = 2278 Score = 29.6 bits (65), Expect = 7.1 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 408 PFHCHTCVASWYSTPVTSFLTSPEMLATYWALRWMPLALVKA 533 PFH + ++S+Y FL +P YW R+ P ++ KA Sbjct: 1006 PFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRF-PFSVEKA 1046
>DHX34_MOUSE (Q9DBV3) Probable ATP-dependent RNA helicase DHX34 (EC 3.6.1.-) (DEAH| box protein 34) Length = 1145 Score = 29.6 bits (65), Expect = 7.1 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = +3 Query: 297 SHRSPCPGFTQCPGANPALSRT*SAIPSMSPPFALPCPFHCHTCVASWYSTP 452 +H + CP + PG +P A P + AL P+HC C + TP Sbjct: 1088 AHENTCP---EAPGDDPGSEEAAPAPPQKTS--ALQRPYHCQVCGQDFLFTP 1134
>YCF2B_ATRBE (Q8S8U1) Protein ycf2| Length = 2291 Score = 29.6 bits (65), Expect = 7.1 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 408 PFHCHTCVASWYSTPVTSFLTSPEMLATYWALRWMPLALVKA 533 PFH + ++S+Y FL +P YW R+ P ++ KA Sbjct: 1013 PFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRF-PFSVEKA 1053
>YCF2A_ATRBE (Q8S8V2) Protein ycf2| Length = 2291 Score = 29.6 bits (65), Expect = 7.1 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 408 PFHCHTCVASWYSTPVTSFLTSPEMLATYWALRWMPLALVKA 533 PFH + ++S+Y FL +P YW R+ P ++ KA Sbjct: 1013 PFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRF-PFSVEKA 1053
>YCF2_TOBAC (P09976) Protein ycf2| Length = 2280 Score = 29.6 bits (65), Expect = 7.1 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 408 PFHCHTCVASWYSTPVTSFLTSPEMLATYWALRWMPLALVKA 533 PFH + ++S+Y FL +P YW R+ P ++ KA Sbjct: 1005 PFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRF-PFSVEKA 1045
>WBS14_HUMAN (Q9NP71) Williams-Beuren syndrome chromosome region 14 protein (WS| basic-helix-loop-helix leucine zipper protein) (WS-bHLH) (Mlx interactor) (MLX-interacting protein-like) Length = 852 Score = 29.3 bits (64), Expect = 9.3 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +2 Query: 266 EEPRRDVVPLIPPVSLPRLH-PVPRREPGLEP 358 E+P+ + P PPV P LH P P + PGLEP Sbjct: 380 EDPKPRLPP--PPVPPPLLHYPPPAKVPGLEP 409
>DYHC_CAEEL (Q19020) Dynein heavy chain, cytosolic (DYHC)| Length = 4568 Score = 29.3 bits (64), Expect = 9.3 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +2 Query: 119 SGSKLGFVVPPQLLHVLAENLREEVVGVPTLHLGVELRDEPGL 247 SG++ + PP L +++E +V V T H G+ RD+ L Sbjct: 3 SGNESSIIQPPNLKTAAEGDVKEYIVQVVTSHFGLSPRDQTTL 45
>SMC_MYCLE (Q9CBT5) Chromosome partition protein smc| Length = 1203 Score = 29.3 bits (64), Expect = 9.3 Identities = 19/46 (41%), Positives = 26/46 (56%) Frame = -3 Query: 233 RAAQRQDEEWVHRRLLRADSRQERAAAVAGLQIQVWSLNTRLAYLT 96 R Q D HR L A RQ+R+ A+A ++ +V +L RLA LT Sbjct: 859 RLTQAVDLAARHRDAL-ATERQQRSVAIAAVRYEVNTLRVRLATLT 903
>EGR1_HUMAN (P18146) Early growth response protein 1 (EGR-1) (Krox-24 protein)| (Transcription factor Zif268) (Nerve growth factor-induced protein A) (NGFI-A) (Transcription factor ETR103) (Zinc finger protein 225) (AT225) Length = 543 Score = 29.3 bits (64), Expect = 9.3 Identities = 21/65 (32%), Positives = 30/65 (46%) Frame = +3 Query: 402 PCPFHCHTCVASWYSTPVTSFLTSPEMLATYWALRWMPLALVKATPLMSSTTRVTALTGL 581 P P + +S Y +PV S SP + TY ++ A V + P + T +A TGL Sbjct: 469 PVPTSFSSPGSSTYPSPVHSGFPSPSVATTYSSVPPAFPAQVSSFPSSAVTNSFSASTGL 528 Query: 582 RSPTA 596 TA Sbjct: 529 SDMTA 533 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,964,951 Number of Sequences: 219361 Number of extensions: 1432527 Number of successful extensions: 5277 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4991 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5254 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
