ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19o19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DMP1_BOVIN (Q95120) Dentin matrix acidic phosphoprotein 1 precur... 28 7.0
2DEF_YERPE (Q8ZJ79) Peptide deformylase (EC 3.5.1.88) (PDF) (Poly... 27 9.2

>DMP1_BOVIN (Q95120) Dentin matrix acidic phosphoprotein 1 precursor (Dentin|
           matrix protein 1) (DMP-1)
          Length = 510

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = -1

Query: 304 EHGSEDVLSQHRD----PAXKXRPGRGDARYQRDTRXHWLG 194
           + G+ D  S+ RD         RP  GD+    D+  HW+G
Sbjct: 155 DEGARDTTSESRDLDREDEGNSRPEGGDSTPDSDSEEHWVG 195



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>DEF_YERPE (Q8ZJ79) Peptide deformylase (EC 3.5.1.88) (PDF) (Polypeptide|
           deformylase)
          Length = 170

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 345 EXHEQVAILADLSRNMDQRMSYLSTEIRRXXSDLG--EAMQGIREIRASI 202
           + H+Q+ ++ D+S N DQR+  ++ E+     + G  E    I E RA +
Sbjct: 53  DVHQQIIVI-DISENRDQRLVLINPELLEKSGETGIEEGCLSIPEQRALV 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,876,207
Number of Sequences: 219361
Number of extensions: 650313
Number of successful extensions: 1363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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