ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19o19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ296273.1|HVU296273 Hordeum vulgare aba7 gene for stress re... 543 e-151
2emb|X69817.1|HVABA7 H.vulgare ABA7 mRNA for ABA-induced protein 543 e-151
3gb|AC103988.7| Homo sapiens chromosome 15, clone RP11-618N24, co... 42 1.3
4emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 i... 42 1.3
5ref|XM_501986.1| Yarrowia lipolytica CLIB122, YALI0C18689g predi... 40 5.1
6gb|AC164561.2| Mus musculus BAC clone RP23-187G5 from chromosome... 40 5.1
7gb|AC005182.2| Homo sapiens 12p13.3 PAC RPCI1-29K11 (Roswell Par... 40 5.1
8gb|AC011703.8|AC011703 Drosophila melanogaster, chromosome X, re... 40 5.1
9gb|AC011702.10|AC011702 Drosophila melanogaster, chromosome X, r... 40 5.1
10gb|AE003506.3| Drosophila melanogaster chromosome X, section 58 ... 40 5.1
11emb|CT033780.10| Mouse DNA sequence from clone RP24-329E14 on ch... 40 5.1
12emb|AM114924.1| Anser anser partial mRNA for MHC class I antigen... 40 5.1
13emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 5.1
14gb|DQ251182.1| Anser anser MHC class I antigen mRNA, partial cds 40 5.1
15gb|L23858.1|YSJATPASEA Yarrowia lipolytica ATPase (PAY4) gene, c... 40 5.1

>emb|AJ296273.1|HVU296273 Hordeum vulgare aba7 gene for stress responsive protein
          Length = 1841

 Score =  543 bits (274), Expect = e-151
 Identities = 355/382 (92%), Gaps = 6/382 (1%)
 Strand = Plus / Minus

                                                                        
Query: 3    tacacangttgctaacaaaanctcaaccgactatgactcgtacaacgata--tacgctgc 60
            |||||| ||||||||||||| ||||||||||||| ||||||||||||||   ||||||||
Sbjct: 1791 tacacatgttgctaacaaaaactcaaccgactataactcgtacaacgatcagtacgctgc 1732

                                                                        
Query: 61   nnggngcgcataattntattcattacaatacaatacacacaagtncgaaatgcanatacg 120
              || |||||||||| |||||||||||||||||||||||  ||  ||||||||| |||||
Sbjct: 1731 aaggagcgcataattttattcattacaatacaatacaca--agatcgaaatgcaaatacg 1674

                                                                        
Query: 121  tagctgccagcagcactaactccagggcttgntgcatttcttcatgaacggaagcaagga 180
             |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 1673 -agctgccagcagcactaactccagggcttgttgcatttgttcatgaacggaagcaagga 1615

                                                                        
Query: 181  ttttggcgctccatcctagccaatgctngcgcgtatctctctgataccttgcatcgcctc 240
            |||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||
Sbjct: 1614 ttttggcgctccatcctagccaatgctt-cacgtatctctctgataccttgcatcgcctc 1556

                                                                        
Query: 241  tcccaggtcgctncttanacgccggatctctgtgctgagataggacatcctctgatccat 300
            |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1555 tcccaggtcgctccttagacgccggatctctgtgctgagataggacatcctctgatccat 1496

                                                                        
Query: 301  gttcctactcaaatctgccaggattgcaacctgttcatggntctcatggccttccaattg 360
            ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1495 gttcctactcagatctgccaggattgcaacctgttcatgggtctcatggccttccaattg 1436

                                  
Query: 361  ctcacaaatttcacnaggcagt 382
            |||| ||||||||| |||||||
Sbjct: 1435 ctcagaaatttcacgaggcagt 1414



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>emb|X69817.1|HVABA7 H.vulgare ABA7 mRNA for ABA-induced protein
          Length = 841

 Score =  543 bits (274), Expect = e-151
 Identities = 355/382 (92%), Gaps = 6/382 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   tacacangttgctaacaaaanctcaaccgactatgactcgtacaacgata--tacgctgc 60
           |||||| ||||||||||||| ||||||||||||| ||||||||||||||   ||||||||
Sbjct: 791 tacacatgttgctaacaaaaactcaaccgactataactcgtacaacgatcagtacgctgc 732

                                                                       
Query: 61  nnggngcgcataattntattcattacaatacaatacacacaagtncgaaatgcanatacg 120
             || |||||||||| |||||||||||||||||||||||  ||  ||||||||| |||||
Sbjct: 731 aaggagcgcataattttattcattacaatacaatacaca--agatcgaaatgcaaatacg 674

                                                                       
Query: 121 tagctgccagcagcactaactccagggcttgntgcatttcttcatgaacggaagcaagga 180
            |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 673 -agctgccagcagcactaactccagggcttgttgcatttgttcatgaacggaagcaagga 615

                                                                       
Query: 181 ttttggcgctccatcctagccaatgctngcgcgtatctctctgataccttgcatcgcctc 240
           |||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||
Sbjct: 614 ttttggcgctccatcctagccaatgctt-cacgtatctctctgataccttgcatcgcctc 556

                                                                       
Query: 241 tcccaggtcgctncttanacgccggatctctgtgctgagataggacatcctctgatccat 300
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcccaggtcgctccttagacgccggatctctgtgctgagataggacatcctctgatccat 496

                                                                       
Query: 301 gttcctactcaaatctgccaggattgcaacctgttcatggntctcatggccttccaattg 360
           ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 495 gttcctactcagatctgccaggattgcaacctgttcatgggtctcatggccttccaattg 436

                                 
Query: 361 ctcacaaatttcacnaggcagt 382
           |||| ||||||||| |||||||
Sbjct: 435 ctcagaaatttcacgaggcagt 414



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>gb|AC103988.7| Homo sapiens chromosome 15, clone RP11-618N24, complete sequence
          Length = 192400

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 82     attacaatacaatacacacaa 102
              |||||||||||||||||||||
Sbjct: 147074 attacaatacaatacacacaa 147094



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>emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 in linkage group 20,
              complete sequence
          Length = 158302

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     tacaatacaatacacacaagt 104
              |||||||||||||||||||||
Sbjct: 154150 tacaatacaatacacacaagt 154170



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>ref|XM_501986.1| Yarrowia lipolytica CLIB122, YALI0C18689g predicted mRNA
          Length = 3075

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 118  acgtagctgccagcagcact 137
            ||||||||||||||||||||
Sbjct: 1726 acgtagctgccagcagcact 1707



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>gb|AC164561.2| Mus musculus BAC clone RP23-187G5 from chromosome 12, complete sequence
          Length = 210186

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     ttacaatacaatacacacaa 102
              ||||||||||||||||||||
Sbjct: 113721 ttacaatacaatacacacaa 113740



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>gb|AC005182.2| Homo sapiens 12p13.3 PAC RPCI1-29K11 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 76201

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   ttccaattgctcacaaattt 371
             ||||||||||||||||||||
Sbjct: 26370 ttccaattgctcacaaattt 26351



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>gb|AC011703.8|AC011703 Drosophila melanogaster, chromosome X, region 16A-16B, BAC clone
             BACR35P18, complete sequence
          Length = 163307

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    ttacaatacaatacacacaa 102
             ||||||||||||||||||||
Sbjct: 33603 ttacaatacaatacacacaa 33584



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>gb|AC011702.10|AC011702 Drosophila melanogaster, chromosome X, region 15F-16A, BAC clone
             BACR42I14, complete sequence
          Length = 167688

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    ttacaatacaatacacacaa 102
             ||||||||||||||||||||
Sbjct: 47250 ttacaatacaatacacacaa 47231



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>gb|AE003506.3| Drosophila melanogaster chromosome X, section 58 of 74 of the complete
             sequence
          Length = 302073

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    ttacaatacaatacacacaa 102
             ||||||||||||||||||||
Sbjct: 68446 ttacaatacaatacacacaa 68427



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>emb|CT033780.10| Mouse DNA sequence from clone RP24-329E14 on chromosome 12, complete
              sequence
          Length = 205515

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     ttacaatacaatacacacaa 102
              ||||||||||||||||||||
Sbjct: 196002 ttacaatacaatacacacaa 196021



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>emb|AM114924.1| Anser anser partial mRNA for MHC class I antigen (MHC gene),
           isolate WL1
          Length = 1062

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 345 catggccttccaattgctcacaaatttc 372
           |||||||||||||| ||||||| |||||
Sbjct: 591 catggccttccaatagctcacatatttc 564



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 118     acgtagctgccagcagcact 137
               ||||||||||||||||||||
Sbjct: 2565734 acgtagctgccagcagcact 2565753



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>gb|DQ251182.1| Anser anser MHC class I antigen mRNA, partial cds
          Length = 1062

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 345 catggccttccaattgctcacaaatttc 372
           |||||||||||||| ||||||| |||||
Sbjct: 591 catggccttccaatagctcacatatttc 564



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>gb|L23858.1|YSJATPASEA Yarrowia lipolytica ATPase (PAY4) gene, complete cds
          Length = 4567

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 118  acgtagctgccagcagcact 137
            ||||||||||||||||||||
Sbjct: 2722 acgtagctgccagcagcact 2703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,022,636
Number of Sequences: 3902068
Number of extensions: 2022636
Number of successful extensions: 35166
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35124
Number of HSP's gapped (non-prelim): 36
length of query: 382
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 360
effective length of database: 17,147,199,772
effective search space: 6172991917920
effective search space used: 6172991917920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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