Clone Name | rbasd19o19 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ296273.1|HVU296273 Hordeum vulgare aba7 gene for stress responsive protein Length = 1841 Score = 543 bits (274), Expect = e-151 Identities = 355/382 (92%), Gaps = 6/382 (1%) Strand = Plus / Minus Query: 3 tacacangttgctaacaaaanctcaaccgactatgactcgtacaacgata--tacgctgc 60 |||||| ||||||||||||| ||||||||||||| |||||||||||||| |||||||| Sbjct: 1791 tacacatgttgctaacaaaaactcaaccgactataactcgtacaacgatcagtacgctgc 1732 Query: 61 nnggngcgcataattntattcattacaatacaatacacacaagtncgaaatgcanatacg 120 || |||||||||| ||||||||||||||||||||||| || ||||||||| ||||| Sbjct: 1731 aaggagcgcataattttattcattacaatacaatacaca--agatcgaaatgcaaatacg 1674 Query: 121 tagctgccagcagcactaactccagggcttgntgcatttcttcatgaacggaagcaagga 180 |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 1673 -agctgccagcagcactaactccagggcttgttgcatttgttcatgaacggaagcaagga 1615 Query: 181 ttttggcgctccatcctagccaatgctngcgcgtatctctctgataccttgcatcgcctc 240 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 1614 ttttggcgctccatcctagccaatgctt-cacgtatctctctgataccttgcatcgcctc 1556 Query: 241 tcccaggtcgctncttanacgccggatctctgtgctgagataggacatcctctgatccat 300 |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1555 tcccaggtcgctccttagacgccggatctctgtgctgagataggacatcctctgatccat 1496 Query: 301 gttcctactcaaatctgccaggattgcaacctgttcatggntctcatggccttccaattg 360 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1495 gttcctactcagatctgccaggattgcaacctgttcatgggtctcatggccttccaattg 1436 Query: 361 ctcacaaatttcacnaggcagt 382 |||| ||||||||| ||||||| Sbjct: 1435 ctcagaaatttcacgaggcagt 1414
>emb|X69817.1|HVABA7 H.vulgare ABA7 mRNA for ABA-induced protein Length = 841 Score = 543 bits (274), Expect = e-151 Identities = 355/382 (92%), Gaps = 6/382 (1%) Strand = Plus / Minus Query: 3 tacacangttgctaacaaaanctcaaccgactatgactcgtacaacgata--tacgctgc 60 |||||| ||||||||||||| ||||||||||||| |||||||||||||| |||||||| Sbjct: 791 tacacatgttgctaacaaaaactcaaccgactataactcgtacaacgatcagtacgctgc 732 Query: 61 nnggngcgcataattntattcattacaatacaatacacacaagtncgaaatgcanatacg 120 || |||||||||| ||||||||||||||||||||||| || ||||||||| ||||| Sbjct: 731 aaggagcgcataattttattcattacaatacaatacaca--agatcgaaatgcaaatacg 674 Query: 121 tagctgccagcagcactaactccagggcttgntgcatttcttcatgaacggaagcaagga 180 |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 673 -agctgccagcagcactaactccagggcttgttgcatttgttcatgaacggaagcaagga 615 Query: 181 ttttggcgctccatcctagccaatgctngcgcgtatctctctgataccttgcatcgcctc 240 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct: 614 ttttggcgctccatcctagccaatgctt-cacgtatctctctgataccttgcatcgcctc 556 Query: 241 tcccaggtcgctncttanacgccggatctctgtgctgagataggacatcctctgatccat 300 |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 555 tcccaggtcgctccttagacgccggatctctgtgctgagataggacatcctctgatccat 496 Query: 301 gttcctactcaaatctgccaggattgcaacctgttcatggntctcatggccttccaattg 360 ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 495 gttcctactcagatctgccaggattgcaacctgttcatgggtctcatggccttccaattg 436 Query: 361 ctcacaaatttcacnaggcagt 382 |||| ||||||||| ||||||| Sbjct: 435 ctcagaaatttcacgaggcagt 414
>gb|AC103988.7| Homo sapiens chromosome 15, clone RP11-618N24, complete sequence Length = 192400 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 attacaatacaatacacacaa 102 ||||||||||||||||||||| Sbjct: 147074 attacaatacaatacacacaa 147094
>emb|BX248238.5| Zebrafish DNA sequence from clone CH211-169J21 in linkage group 20, complete sequence Length = 158302 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 tacaatacaatacacacaagt 104 ||||||||||||||||||||| Sbjct: 154150 tacaatacaatacacacaagt 154170
>ref|XM_501986.1| Yarrowia lipolytica CLIB122, YALI0C18689g predicted mRNA Length = 3075 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 acgtagctgccagcagcact 137 |||||||||||||||||||| Sbjct: 1726 acgtagctgccagcagcact 1707
>gb|AC164561.2| Mus musculus BAC clone RP23-187G5 from chromosome 12, complete sequence Length = 210186 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ttacaatacaatacacacaa 102 |||||||||||||||||||| Sbjct: 113721 ttacaatacaatacacacaa 113740
>gb|AC005182.2| Homo sapiens 12p13.3 PAC RPCI1-29K11 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 76201 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 ttccaattgctcacaaattt 371 |||||||||||||||||||| Sbjct: 26370 ttccaattgctcacaaattt 26351
>gb|AC011703.8|AC011703 Drosophila melanogaster, chromosome X, region 16A-16B, BAC clone BACR35P18, complete sequence Length = 163307 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ttacaatacaatacacacaa 102 |||||||||||||||||||| Sbjct: 33603 ttacaatacaatacacacaa 33584
>gb|AC011702.10|AC011702 Drosophila melanogaster, chromosome X, region 15F-16A, BAC clone BACR42I14, complete sequence Length = 167688 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ttacaatacaatacacacaa 102 |||||||||||||||||||| Sbjct: 47250 ttacaatacaatacacacaa 47231
>gb|AE003506.3| Drosophila melanogaster chromosome X, section 58 of 74 of the complete sequence Length = 302073 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ttacaatacaatacacacaa 102 |||||||||||||||||||| Sbjct: 68446 ttacaatacaatacacacaa 68427
>emb|CT033780.10| Mouse DNA sequence from clone RP24-329E14 on chromosome 12, complete sequence Length = 205515 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ttacaatacaatacacacaa 102 |||||||||||||||||||| Sbjct: 196002 ttacaatacaatacacacaa 196021
>emb|AM114924.1| Anser anser partial mRNA for MHC class I antigen (MHC gene), isolate WL1 Length = 1062 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 345 catggccttccaattgctcacaaatttc 372 |||||||||||||| ||||||| ||||| Sbjct: 591 catggccttccaatagctcacatatttc 564
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 acgtagctgccagcagcact 137 |||||||||||||||||||| Sbjct: 2565734 acgtagctgccagcagcact 2565753
>gb|DQ251182.1| Anser anser MHC class I antigen mRNA, partial cds Length = 1062 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 345 catggccttccaattgctcacaaatttc 372 |||||||||||||| ||||||| ||||| Sbjct: 591 catggccttccaatagctcacatatttc 564
>gb|L23858.1|YSJATPASEA Yarrowia lipolytica ATPase (PAY4) gene, complete cds Length = 4567 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 acgtagctgccagcagcact 137 |||||||||||||||||||| Sbjct: 2722 acgtagctgccagcagcact 2703 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,022,636 Number of Sequences: 3902068 Number of extensions: 2022636 Number of successful extensions: 35166 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35124 Number of HSP's gapped (non-prelim): 36 length of query: 382 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 360 effective length of database: 17,147,199,772 effective search space: 6172991917920 effective search space used: 6172991917920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)