ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19o15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1QUA1_ARATH (Q9LSG3) Glycosyltransferase QUASIMODO1 (EC 2.4.1.-) 146 6e-35
2GLTR_ARATH (Q9FWA4) Probable glycosyltransferase At3g02350 (EC 2... 144 2e-34
3NS1_IADU3 (P08270) Nonstructural protein 1 (NS1) (NS1A) (Fragment) 30 6.0
4METE_BUCAP (Q8KA71) 5-methyltetrahydropteroyltriglutamate--homoc... 30 7.9
5NS1_IATRS (P08278) Nonstructural protein 1 (NS1) (NS1A) (Fragment) 30 7.9

>QUA1_ARATH (Q9LSG3) Glycosyltransferase QUASIMODO1 (EC 2.4.1.-)|
          Length = 559

 Score =  146 bits (368), Expect = 6e-35
 Identities = 58/95 (61%), Positives = 78/95 (82%)
 Frame = -2

Query: 634 YHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGYNPHVSSRDLERAAVIH 455
           YH+WQ LNE+  LWKLGTLPPGL+TF++ T PLD+SWHVLGLGYNP +S  ++  AAV+H
Sbjct: 462 YHYWQNLNENRALWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVH 521

Query: 454 YNGNLKPWLEIGLPKFRSYWSKYLDYDQPFLRECN 350
           +NGN+KPWL+I + +FR  W+K++DYD  F++ CN
Sbjct: 522 FNGNMKPWLDIAMNQFRPLWTKHVDYDLEFVQACN 556



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>GLTR_ARATH (Q9FWA4) Probable glycosyltransferase At3g02350 (EC 2.4.1.-)|
          Length = 561

 Score =  144 bits (364), Expect = 2e-34
 Identities = 59/95 (62%), Positives = 77/95 (81%)
 Frame = -2

Query: 634 YHFWQKLNEDGLLWKLGTLPPGLVTFWNKTFPLDRSWHVLGLGYNPHVSSRDLERAAVIH 455
           YH+WQ LNED  LWKLGTLPPGL+TF++KT  LD+SWHVLGLGYNP VS  ++  A VIH
Sbjct: 464 YHYWQNLNEDRTLWKLGTLPPGLITFYSKTKSLDKSWHVLGLGYNPGVSMDEIRNAGVIH 523

Query: 454 YNGNLKPWLEIGLPKFRSYWSKYLDYDQPFLRECN 350
           YNGN+KPWL+I + +++S W+KY+D +  F++ CN
Sbjct: 524 YNGNMKPWLDIAMNQYKSLWTKYVDNEMEFVQMCN 558



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>NS1_IADU3 (P08270) Nonstructural protein 1 (NS1) (NS1A) (Fragment)|
          Length = 227

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -3

Query: 387 TLTMISLFCGNATSIREARPVPPTPSHSDSSLGSSVFDLFVSLDF 253
           TL ++  F  +   + E  P+P  P H+D  + +++ DL   L++
Sbjct: 140 TLILLRAFTEDGAIVGEISPLPSLPGHTDEDVKNAIGDLIGGLEW 184



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>METE_BUCAP (Q8KA71) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 757

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -2

Query: 574 PGLVTFWN---KTFPLDRSWHVLGLGYNPHVSSRDLERAAVIHYNGNLKPWLEIGLPKFR 404
           P  + FW+   +   L++    +GL     V   + E+  +I  +   +P L  GLP  +
Sbjct: 554 PVTILFWSFPREDISLEKIAKQIGLALRDEVLDLEKEKIEIIQID---EPALREGLPLRK 610

Query: 403 SYWSKYLDY 377
           S W++YL +
Sbjct: 611 SLWNEYLSW 619



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>NS1_IATRS (P08278) Nonstructural protein 1 (NS1) (NS1A) (Fragment)|
          Length = 227

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 387 TLTMISLFCGNATSIREARPVPPTPSHSDSSLGSSVFDLFVSLDF 253
           TL ++  F      + E  P+P  P H+D  + +++ DL   L++
Sbjct: 140 TLILLRAFTEEGAIVGEISPLPSLPGHTDEDVKNAIGDLIGGLEW 184


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,623,020
Number of Sequences: 219361
Number of extensions: 2048894
Number of successful extensions: 5320
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5319
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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