ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19o15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016505.1| Zea mays clone Contig338 mRNA sequence 222 1e-54
2ref|XM_481635.1| Oryza sativa (japonica cultivar-group), mRNA 212 1e-51
3dbj|AK073839.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 1e-51
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 206 6e-50
5dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic D... 206 6e-50
6dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic D... 206 6e-50
7gb|AY110251.1| Zea mays CL21732_1 mRNA sequence 198 2e-47
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
9dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
10dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
11dbj|AK100641.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
12gb|BT024133.1| Zea mays clone EL01N0447F06 mRNA sequence 56 1e-04
13gb|AC122313.4| Mus musculus BAC clone RP23-300N8 from chromosome... 42 2.2
14gb|AC102197.7| Mus musculus chromosome 1, clone RP24-466J11, com... 42 2.2
15gb|AC150421.2| Branchiostoma floridae clone CH302-78B15, complet... 42 2.2
16gb|AC119897.8| Mus musculus chromosome 1, clone RP24-227F14, com... 42 2.2
17gb|AC122194.4| Mus musculus BAC clone RP23-47D6 from chromosome ... 42 2.2
18emb|AL442634.13| Human DNA sequence from clone RP11-297L11 on ch... 42 2.2
19gb|AC021735.8| Homo sapiens chromosome 18, clone RP11-107G7, com... 42 2.2
20dbj|AK087054.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 42 2.2
21emb|AL035402.7|HS88J8 Human DNA sequence from clone RP1-88J8 on ... 42 2.2
22gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 8.7
23gb|AC162944.4| Mus musculus BAC clone RP23-76L8 from chromosome ... 40 8.7
24ref|XM_991884.1| PREDICTED: Mus musculus hypothetical protein LO... 40 8.7
25gb|AC147343.2| Pan troglodytes BAC clone CH251-14P15 from Y, com... 40 8.7
26gb|AC147117.2| Pan troglodytes BAC clone CH251-532B3 from Y, com... 40 8.7
27ref|XM_572234.1| Cryptococcus neoformans var. neoformans JEC21 s... 40 8.7
28gb|AC125312.4| Mus musculus BAC clone RP24-348G4 from chromosome... 40 8.7
29gb|AC133210.3| Mus musculus chromosome UNK clone RP23-27L12, com... 40 8.7
30gb|AC107819.8| Mus musculus chromosome 9, clone RP23-158E1, comp... 40 8.7
31gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-3... 40 8.7
32emb|AL139182.24| Human DNA sequence from clone RP11-278A16 on ch... 40 8.7
33emb|AL139113.21| Human DNA sequence from clone RP11-176F3 on chr... 40 8.7
34dbj|BS000578.1| Pan troglodytes chromosome Y clone:PTB-519P18, c... 40 8.7
35gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 8.7
36gb|AC022844.8| Homo sapiens chromosome 8, clone RP11-250P18, com... 40 8.7
37gb|DP000032.1| Felis catus target 116 genomic scaffold 40 8.7
38dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
39gb|AC008068.4| Homo sapiens BAC clone RP11-334F17 from 2, comple... 40 8.7
40ref|XM_234281.3| PREDICTED: Rattus norvegicus AT rich interactiv... 40 8.7
41gb|AC084308.8| Homo sapiens chromosome 8, clone RP1-155O2, compl... 40 8.7
42gb|AC005191.1|AC005191 Homo sapiens PAC clone RP1-269O5 from Xq2... 40 8.7
43dbj|AK065485.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.7
44dbj|AP006250.1| Homo sapiens genomic DNA, chromosome 8, clone:RP... 40 8.7
45dbj|AP006206.1| Homo sapiens genomic DNA, chromosome 8, clone:RP... 40 8.7
46gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.7
47emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.7
48emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.7
49dbj|AP000077.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 8.7 
>gb|BT016505.1| Zea mays clone Contig338 mRNA sequence
          Length = 1048

 Score =  222 bits (112), Expect = 1e-54
 Identities = 223/260 (85%)
 Strand = Plus / Minus

                                                                       
Query: 336 cttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtactttgac 395
           ||||| |||||||||||||||||||| || ||||  || ||||| || || ||||| |||
Sbjct: 734 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 675

                                                                       
Query: 396 cagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccattgtaa 455
           |||||||| || |||||||| || |||||||| | ||||||||||| |||||||||||||
Sbjct: 674 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 615

                                                                       
Query: 456 tgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaacctagaccg 515
           ||||||||||| ||| |||| | |||||| ||| | ||||| || |||||||||||||| 
Sbjct: 614 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 555

                                                                       
Query: 516 agaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagacctgga 575
           ||||||||||||||  |   |||||| |||||||||||||||||||| |||| ||| |||
Sbjct: 554 agaacatgccatgactggctgaggggaaatgtcttgttccagaatgtgaccaaacccgga 495

                               
Query: 576 gggagagtgccaagtttcca 595
           |||||||| |||||||||||
Sbjct: 494 gggagagtaccaagtttcca 475
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>ref|XM_481635.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2371

 Score =  212 bits (107), Expect = 1e-51
 Identities = 248/295 (84%)
 Strand = Plus / Minus

                                                                        
Query: 331  tcttgcttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtact 390
            |||| ||||| ||||||||||| || |||||||| || ||||| ||||| || |||||  
Sbjct: 1995 tctttcttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatg 1936

                                                                        
Query: 391  ttgaccagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccat 450
              ||||||||| ||||||| ||||| || |||||||| ||||| |||||||  |||||||
Sbjct: 1935 ccgaccagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccat 1876

                                                                        
Query: 451  tgtaatgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaaccta 510
            ||||||||||||| |||||||| || |  ||||| ||||| ||||| ||||||||||| |
Sbjct: 1875 tgtaatgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaa 1816

                                                                        
Query: 511  gaccgagaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagac 570
            |||| || ||||||||||| |||| |||||| |  ||||| ||||||||||||| || ||
Sbjct: 1815 gaccaaggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaac 1756

                                                                   
Query: 571  ctggagggagagtgccaagtttccatagcagtccgtcctcgttaagcttctgcca 625
            ||||||| |||||||||||||||||||| | || |||||  |||||||| |||||
Sbjct: 1755 ctggaggcagagtgccaagtttccatagtaatctgtcctgattaagcttttgcca 1701
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>dbj|AK073839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070B13, full
            insert sequence
          Length = 2371

 Score =  212 bits (107), Expect = 1e-51
 Identities = 248/295 (84%)
 Strand = Plus / Minus

                                                                        
Query: 331  tcttgcttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtact 390
            |||| ||||| ||||||||||| || |||||||| || ||||| ||||| || |||||  
Sbjct: 1995 tctttcttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatg 1936

                                                                        
Query: 391  ttgaccagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccat 450
              ||||||||| ||||||| ||||| || |||||||| ||||| |||||||  |||||||
Sbjct: 1935 ccgaccagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccat 1876

                                                                        
Query: 451  tgtaatgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaaccta 510
            ||||||||||||| |||||||| || |  ||||| ||||| ||||| ||||||||||| |
Sbjct: 1875 tgtaatgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaa 1816

                                                                        
Query: 511  gaccgagaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagac 570
            |||| || ||||||||||| |||| |||||| |  ||||| ||||||||||||| || ||
Sbjct: 1815 gaccaaggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaac 1756

                                                                   
Query: 571  ctggagggagagtgccaagtttccatagcagtccgtcctcgttaagcttctgcca 625
            ||||||| |||||||||||||||||||| | || |||||  |||||||| |||||
Sbjct: 1755 ctggaggcagagtgccaagtttccatagtaatctgtcctgattaagcttttgcca 1701
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  206 bits (104), Expect = 6e-50
 Identities = 227/268 (84%)
 Strand = Plus / Minus

                                                                            
Query: 331      tcttgcttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtact 390
                |||| ||||| ||||||||||| || |||||||| || ||||| ||||| || |||||  
Sbjct: 14395454 tctttcttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatg 14395395

                                                                            
Query: 391      ttgaccagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccat 450
                  ||||||||| ||||||| ||||| || |||||||| ||||| |||||||  |||||||
Sbjct: 14395394 ccgaccagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccat 14395335

                                                                            
Query: 451      tgtaatgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaaccta 510
                ||||||||||||| |||||||| || |  ||||| ||||| ||||| ||||||||||| |
Sbjct: 14395334 tgtaatgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaa 14395275

                                                                            
Query: 511      gaccgagaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagac 570
                |||| || ||||||||||| |||| |||||| |  ||||| ||||||||||||| || ||
Sbjct: 14395274 gaccaaggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaac 14395215

                                            
Query: 571      ctggagggagagtgccaagtttccatag 598
                ||||||| ||||||||||||||||||||
Sbjct: 14395214 ctggaggcagagtgccaagtttccatag 14395187
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>dbj|AP004759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0670E08
          Length = 133106

 Score =  206 bits (104), Expect = 6e-50
 Identities = 227/268 (84%)
 Strand = Plus / Minus

                                                                         
Query: 331   tcttgcttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtact 390
             |||| ||||| ||||||||||| || |||||||| || ||||| ||||| || |||||  
Sbjct: 39737 tctttcttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatg 39678

                                                                         
Query: 391   ttgaccagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccat 450
               ||||||||| ||||||| ||||| || |||||||| ||||| |||||||  |||||||
Sbjct: 39677 ccgaccagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccat 39618

                                                                         
Query: 451   tgtaatgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaaccta 510
             ||||||||||||| |||||||| || |  ||||| ||||| ||||| ||||||||||| |
Sbjct: 39617 tgtaatgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaa 39558

                                                                         
Query: 511   gaccgagaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagac 570
             |||| || ||||||||||| |||| |||||| |  ||||| ||||||||||||| || ||
Sbjct: 39557 gaccaaggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaac 39498

                                         
Query: 571   ctggagggagagtgccaagtttccatag 598
             ||||||| ||||||||||||||||||||
Sbjct: 39497 ctggaggcagagtgccaagtttccatag 39470
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>dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1136_A10
          Length = 101249

 Score =  206 bits (104), Expect = 6e-50
 Identities = 227/268 (84%)
 Strand = Plus / Minus

                                                                         
Query: 331   tcttgcttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtact 390
             |||| ||||| ||||||||||| || |||||||| || ||||| ||||| || |||||  
Sbjct: 98534 tctttcttcaaggattgatgttacactcccgcaggaagggctggtcataatcgaggtatg 98475

                                                                         
Query: 391   ttgaccagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccat 450
               ||||||||| ||||||| ||||| || |||||||| ||||| |||||||  |||||||
Sbjct: 98474 ccgaccagtagtttcggaatttgggcagaccaatctccagccaaggcttcatattgccat 98415

                                                                         
Query: 451   tgtaatgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaaccta 510
             ||||||||||||| |||||||| || |  ||||| ||||| ||||| ||||||||||| |
Sbjct: 98414 tgtaatgtatgaccgcggcacgttcaatatctctgctgctcacatgcgggttgtaaccaa 98355

                                                                         
Query: 511   gaccgagaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagac 570
             |||| || ||||||||||| |||| |||||| |  ||||| ||||||||||||| || ||
Sbjct: 98354 gaccaaggacatgccatgaacgattgaggggaagcgtcttattccagaatgtaatcaaac 98295

                                         
Query: 571   ctggagggagagtgccaagtttccatag 598
             ||||||| ||||||||||||||||||||
Sbjct: 98294 ctggaggcagagtgccaagtttccatag 98267
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>gb|AY110251.1| Zea mays CL21732_1 mRNA sequence
          Length = 707

 Score =  198 bits (100), Expect = 2e-47
 Identities = 220/260 (84%)
 Strand = Plus / Plus

                                                                       
Query: 336 cttcacggattgatgttgcattcccgcagaaaaggctgatcatagtcaaggtactttgac 395
           ||||| |||||||||||||||||||| || ||||  || ||||| || || ||||| |||
Sbjct: 303 cttcatggattgatgttgcattcccgaaggaaagattggtcataatccagatacttggac 362

                                                                       
Query: 396 cagtagcttcggaacttggggaggccaatctcaagccagggcttcaggttgccattgtaa 455
           |||||||| || |||||||| || |||||||| | ||||||||||| |||||||||||||
Sbjct: 363 cagtagctccgaaacttgggtagaccaatctccaaccagggcttcatgttgccattgtaa 422

                                                                       
Query: 456 tgtatgactgcggcacgctccaggtctctactgcttacatgtgggttgtaacctagaccg 515
           ||||||||||| ||| |||| | |||||| ||| | ||||| || |||||||||||||| 
Sbjct: 423 tgtatgactgcagcatgctcaatgtctctgctgttaacatggggattgtaacctagacca 482

                                                                       
Query: 516 agaacatgccatgatcgatcgagggggaatgtcttgttccagaatgtaaccagacctgga 575
           ||||||||||||||  |   |||||| |||||||||||||||||||| |||| ||    |
Sbjct: 483 agaacatgccatgactggctgaggggaaatgtcttgttccagaatgtgaccaaacacaaa 542

                               
Query: 576 gggagagtgccaagtttcca 595
           |||||||| |||||||||||
Sbjct: 543 gggagagtaccaagtttcca 562
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                            
Query: 420      ccaatctcaagccagggcttcaggttgccattgtaatgtatgac 463
                ||||||||||||||||| ||||| || |||||||| ||||||||
Sbjct: 18390149 ccaatctcaagccagggtttcagattaccattgtagtgtatgac 18390106
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>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0463G11
          Length = 154188

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                          
Query: 420    ccaatctcaagccagggcttcaggttgccattgtaatgtatgac 463
              ||||||||||||||||| ||||| || |||||||| ||||||||
Sbjct: 104885 ccaatctcaagccagggtttcagattaccattgtagtgtatgac 104842
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>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463D04
          Length = 145828

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 420   ccaatctcaagccagggcttcaggttgccattgtaatgtatgac 463
             ||||||||||||||||| ||||| || |||||||| ||||||||
Sbjct: 52023 ccaatctcaagccagggtttcagattaccattgtagtgtatgac 51980
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>dbj|AK100641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110G15, full
            insert sequence
          Length = 2535

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 420  ccaatctcaagccagggcttcaggttgccattgtaatgtatgac 463
            ||||||||||||||||| ||||| || |||||||| ||||||||
Sbjct: 2196 ccaatctcaagccagggtttcagattaccattgtagtgtatgac 2153
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>gb|BT024133.1| Zea mays clone EL01N0447F06 mRNA sequence
          Length = 1658

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 420  ccaatctcaagccagggcttcaggttgccattgtaatgtatgac 463
            |||||||||||||||||||||||||| || ||||| || |||||
Sbjct: 1367 ccaatctcaagccagggcttcaggtttccgttgtagtggatgac 1324
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>gb|AC122313.4| Mus musculus BAC clone RP23-300N8 from chromosome 13, complete sequence
          Length = 224940

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 65     acccagggtctttgggtcttt 85
              |||||||||||||||||||||
Sbjct: 123033 acccagggtctttgggtcttt 123053
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>gb|AC102197.7| Mus musculus chromosome 1, clone RP24-466J11, complete sequence
          Length = 150253

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 438    ttcaggttgccattgtaatgt 458
              |||||||||||||||||||||
Sbjct: 105248 ttcaggttgccattgtaatgt 105228
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>gb|AC150421.2| Branchiostoma floridae clone CH302-78B15, complete sequence
          Length = 159541

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 151   acaatggcatgccaaaaagca 171
             |||||||||||||||||||||
Sbjct: 33321 acaatggcatgccaaaaagca 33301
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>gb|AC119897.8| Mus musculus chromosome 1, clone RP24-227F14, complete sequence
          Length = 195375

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 136   actttttcctacacaacaatg 156
             |||||||||||||||||||||
Sbjct: 84282 actttttcctacacaacaatg 84262
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>gb|AC122194.4| Mus musculus BAC clone RP23-47D6 from chromosome 13, complete sequence
          Length = 192347

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 65     acccagggtctttgggtcttt 85
              |||||||||||||||||||||
Sbjct: 122313 acccagggtctttgggtcttt 122333
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>emb|AL442634.13| Human DNA sequence from clone RP11-297L11 on chromosome 9 Contains
            part of a novel gene (LOC158135), complete sequence
          Length = 57943

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 259  aagagagacaaatagatcaaa 279
            |||||||||||||||||||||
Sbjct: 3974 aagagagacaaatagatcaaa 3994
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>gb|AC021735.8| Homo sapiens chromosome 18, clone RP11-107G7, complete sequence
          Length = 170510

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 176   gagtgcagaattattattttcccct 200
             ||||||||||||||| |||||||||
Sbjct: 80001 gagtgcagaattatttttttcccct 80025
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>dbj|AK087054.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
           library, clone:E030022O08 product:unclassifiable, full
           insert sequence
          Length = 1177

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 136 actttttcctacacaacaatg 156
           |||||||||||||||||||||
Sbjct: 783 actttttcctacacaacaatg 803
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>emb|AL035402.7|HS88J8 Human DNA sequence from clone RP1-88J8 on chromosome 6p21.31-21.33
             Contains the OR2W1 gene for olfactory receptor 2W1,
             olfactory receptor 2P1 pseudogene OR2P1P and a GTP binding
             protein pseudogene. Contains ESTs, an STS and GSS,
             complete sequence
          Length = 47216

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 250   acaaaaatcaagagagacaaataga 274
             |||||||| ||||||||||||||||
Sbjct: 26254 acaaaaataaagagagacaaataga 26230
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>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete
               sequence
          Length = 1194300

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 305     gaatggcttggagtcggagg 324
               ||||||||||||||||||||
Sbjct: 1072379 gaatggcttggagtcggagg 1072398
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>gb|AC162944.4| Mus musculus BAC clone RP23-76L8 from chromosome 13, complete sequence
          Length = 155927

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    cccagggtctttgggtcttt 85
             ||||||||||||||||||||
Sbjct: 80118 cccagggtctttgggtcttt 80137
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>ref|XM_991884.1| PREDICTED: Mus musculus hypothetical protein LOC667689 (LOC667689),
           mRNA
          Length = 858

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 66  cccagggtctttgggtcttt 85
           ||||||||||||||||||||
Sbjct: 601 cccagggtctttgggtcttt 620
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>gb|AC147343.2| Pan troglodytes BAC clone CH251-14P15 from Y, complete sequence
          Length = 277007

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    caaaaagcatttggagtgca 182
              ||||||||||||||||||||
Sbjct: 168994 caaaaagcatttggagtgca 169013
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>gb|AC147117.2| Pan troglodytes BAC clone CH251-532B3 from Y, complete sequence
          Length = 207020

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   caaaaagcatttggagtgca 182
             ||||||||||||||||||||
Sbjct: 11745 caaaaagcatttggagtgca 11726
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>ref|XM_572234.1| Cryptococcus neoformans var. neoformans JEC21 sister chromatid
           cohesion-related protein (CNH00420) partial mRNA
          Length = 2679

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 305 gaatggcttggagtcggagg 324
           ||||||||||||||||||||
Sbjct: 978 gaatggcttggagtcggagg 959
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>gb|AC125312.4| Mus musculus BAC clone RP24-348G4 from chromosome 13, complete sequence
          Length = 168617

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     cccagggtctttgggtcttt 85
              ||||||||||||||||||||
Sbjct: 105021 cccagggtctttgggtcttt 105002



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    cccagggtctttgggtcttt 85
             ||||||||||||||||||||
Sbjct: 25631 cccagggtctttgggtcttt 25612
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>gb|AC133210.3| Mus musculus chromosome UNK clone RP23-27L12, complete sequence
          Length = 210702

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 536   gagggggaatgtcttgttcc 555
             ||||||||||||||||||||
Sbjct: 17877 gagggggaatgtcttgttcc 17896
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>gb|AC107819.8| Mus musculus chromosome 9, clone RP23-158E1, complete sequence
          Length = 172309

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   agaatggcttggagtcggag 323
             ||||||||||||||||||||
Sbjct: 36841 agaatggcttggagtcggag 36860
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>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete sequence
          Length = 172016

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 340   acggattgatgttgcattcccgca 363
             ||||||||||||||||||| ||||
Sbjct: 52027 acggattgatgttgcattctcgca 52050
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>emb|AL139182.24| Human DNA sequence from clone RP11-278A16 on chromosome 13 Contains a
             proteasome (prosome, macropain) activator subunit 2 (PA28
             beta) (PSME2) pseudogene, complete sequence
          Length = 133202

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   aagagagacaaatagatcaa 278
             ||||||||||||||||||||
Sbjct: 70958 aagagagacaaatagatcaa 70939
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>emb|AL139113.21| Human DNA sequence from clone RP11-176F3 on chromosome 9 Contains the
             3' end of the PRSS3 gene for serine protease 3
             (mesotrypsin) (MTG, TRY3, TRY4, PRSS4), the 5' end of a
             novel gene, two novel pseudogenes, a DC2 protein
             pseudogene, the UBC3B gene for ubiquitin-conjugating
             enzyme, two novel genes, the 3' end of a novel gene
             (KIAA1491, FLJ22435, FLJ21704, FLJ22148, FLJ33002) and a
             CpG island, complete sequence
          Length = 193280

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 144   ctacacaacaatggcatgccaaaaagca 171
             |||||| |||||||||||| ||||||||
Sbjct: 46047 ctacactacaatggcatgctaaaaagca 46020
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>dbj|BS000578.1| Pan troglodytes chromosome Y clone:PTB-519P18, complete sequences
          Length = 175850

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   caaaaagcatttggagtgca 182
             ||||||||||||||||||||
Sbjct: 42140 caaaaagcatttggagtgca 42159
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    caaaaagcatttggagtgca 182
              ||||||||||||||||||||
Sbjct: 238013 caaaaagcatttggagtgca 238032
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>gb|AC022844.8| Homo sapiens chromosome 8, clone RP11-250P18, complete sequence
          Length = 171732

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   ttggagtgcagaattattat 192
             ||||||||||||||||||||
Sbjct: 59046 ttggagtgcagaattattat 59065
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>gb|DP000032.1| Felis catus target 116 genomic scaffold
          Length = 376810

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   gcatgtaatctcaaccccta 224
             ||||||||||||||||||||
Sbjct: 10047 gcatgtaatctcaaccccta 10028
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 447      ccattgtaatgtatgactgc 466
                ||||||||||||||||||||
Sbjct: 23970261 ccattgtaatgtatgactgc 23970280
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>gb|AC008068.4| Homo sapiens BAC clone RP11-334F17 from 2, complete sequence
          Length = 154036

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 562    taaccagacctggagggaga 581
              ||||||||||||||||||||
Sbjct: 149760 taaccagacctggagggaga 149779
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>ref|XM_234281.3| PREDICTED: Rattus norvegicus AT rich interactive domain 4A (Rbp1
           like) (predicted) (Arid4a_predicted), mRNA
          Length = 4822

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 364 gaaaaggctgatcatagtcaaggtactt 391
           |||||||||| ||| |||||||||||||
Sbjct: 96  gaaaaggctggtcaaagtcaaggtactt 123
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>gb|AC084308.8| Homo sapiens chromosome 8, clone RP1-155O2, complete sequence
          Length = 121239

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   tgatgttgcattcccgcaga 365
             ||||||||||||||||||||
Sbjct: 69192 tgatgttgcattcccgcaga 69173
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>gb|AC005191.1|AC005191 Homo sapiens PAC clone RP1-269O5 from Xq23, complete sequence
          Length = 185893

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    atcaagagagacaaatagat 275
              ||||||||||||||||||||
Sbjct: 143134 atcaagagagacaaatagat 143153
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>dbj|AK065485.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013003G01, full
            insert sequence
          Length = 2519

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 447  ccattgtaatgtatgactgc 466
            ||||||||||||||||||||
Sbjct: 2014 ccattgtaatgtatgactgc 1995
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>dbj|AP006250.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-632H17, complete
              sequence
          Length = 197556

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    tgatgttgcattcccgcaga 365
              ||||||||||||||||||||
Sbjct: 122489 tgatgttgcattcccgcaga 122470
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>dbj|AP006206.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-65L4, complete
             sequence
          Length = 156296

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   tgatgttgcattcccgcaga 365
             ||||||||||||||||||||
Sbjct: 24892 tgatgttgcattcccgcaga 24873
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 447      ccattgtaatgtatgactgc 466
                ||||||||||||||||||||
Sbjct: 23898467 ccattgtaatgtatgactgc 23898486
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>emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa0014A07 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 144767

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 447  ccattgtaatgtatgactgc 466
            ||||||||||||||||||||
Sbjct: 2921 ccattgtaatgtatgactgc 2902
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>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 176388

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 447    ccattgtaatgtatgactgc 466
              ||||||||||||||||||||
Sbjct: 117135 ccattgtaatgtatgactgc 117116
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>dbj|AP000077.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 13/19, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 346   tgatgttgcattcccgcaga 365
             ||||||||||||||||||||
Sbjct: 99667 tgatgttgcattcccgcaga 99686


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,505,063
Number of Sequences: 3902068
Number of extensions: 5505063
Number of successful extensions: 94744
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94498
Number of HSP's gapped (non-prelim): 238
length of query: 635
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 612
effective length of database: 17,143,297,704
effective search space: 10491698194848
effective search space used: 10491698194848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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