ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19o14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468115.1| Oryza sativa (japonica cultivar-group), mRNA 375 e-100
2dbj|AK061791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 375 e-100
3gb|AY224477.1| Oryza sativa (japonica cultivar-group) isolate 29... 313 3e-82
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
5dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
6ref|XM_450925.1| Oryza sativa (japonica cultivar-group), mRNA 101 2e-18
7dbj|AK109671.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 90 9e-15
9dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic D... 90 9e-15
10gb|AY104988.1| Zea mays PCO117307 mRNA sequence 62 2e-06
11gb|BT017915.1| Zea mays clone EL01N0518E08.c mRNA sequence 50 0.008
12emb|BX572098.1| Prochlorococcus marinus MIT9313 complete genome;... 44 0.47
13emb|AL929410.7| Human DNA sequence from clone RP11-234P3 on chro... 42 1.9
14ref|NM_118592.2| Arabidopsis thaliana unknown protein AT4G24590 ... 40 7.4
15gb|AC113446.10| Mus musculus chromosome 5, clone RP23-258C6, com... 40 7.4
16gb|AC144927.5| Mus musculus chromosome 5, clone RP23-464P20, com... 40 7.4
17ref|XM_426625.1| PREDICTED: Gallus gallus similar to Ras GTPase-... 40 7.4
18gb|BC073208.1| Xenopus laevis LIM protein prickle b, mRNA (cDNA ... 40 7.4
19gb|AC147348.2| Xenopus tropicalis clone CH216-122H9, complete se... 40 7.4
20gb|AC146197.3| Pan troglodytes BAC clone CH251-450H3 from Y, com... 40 7.4
21gb|AC137123.7| Mus musculus chromosome 15, clone RP23-401L15, co... 40 7.4
22gb|AC183669.3| Pan troglodytes BAC clone CH251-549L23 from chrom... 40 7.4
23emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 7.4
24gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome... 40 7.4
25gb|AC123822.4| Mus musculus BAC clone RP23-477F12 from chromosom... 40 7.4
26gb|AC146290.1| Pan troglodytes BAC clone CH251-549P23 from Y, co... 40 7.4
27emb|AL831720.4| Human DNA sequence from clone RP11-441K23 on chr... 40 7.4
28emb|AL590678.3| Human DNA sequence from clone RP11-141E7 on chro... 40 7.4
29emb|AL645800.5| Zebrafish DNA sequence from clone XX-184L24 Cont... 40 7.4
30emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, ... 40 7.4
31emb|AL035356.1|ATF22K18 Arabidopsis thaliana DNA chromosome 4, B... 40 7.4
32gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome... 40 7.4
33ref|NM_001016939.1| Xenopus tropicalis PRICKLE1 protein (PRICKLE... 40 7.4
34gb|BC098954.1| Xenopus laevis LIM protein prickle, mRNA (cDNA cl... 40 7.4
35emb|BX510938.11| Zebrafish DNA sequence from clone DKEY-92K1 in ... 40 7.4
36gb|AC151819.2| Xenopus tropicalis BAC clone ISB1-243M8 containin... 40 7.4
37dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, c... 40 7.4
38dbj|BS000536.1| Pan troglodytes chromosome Y clone:PTB-100K06, c... 40 7.4
39gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.4
40gb|AC098827.3| Homo sapiens BAC clone RP11-640B6 from 4, complet... 40 7.4
41gb|AC016546.6| Homo sapiens chromosome 5 clone CTC-232H10, compl... 40 7.4
42gb|AY055473.1| Xenopus laevis LIM protein prickle b mRNA, comple... 40 7.4
43gb|AF387815.1|AF387815 Xenopus laevis LIM protein prickle (PRICK... 40 7.4
44dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
45gb|AC010726.4|AC010726 Homo sapiens BAC clone RP11-224C16 from Y... 40 7.4
46dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
47emb|AL928990.4| Zebrafish DNA sequence from clone CH211-11F8, co... 40 7.4
48dbj|AK117386.1| Arabidopsis thaliana At4g24590 mRNA for unknown ... 40 7.4
49emb|BX470160.9| Zebrafish DNA sequence from clone DKEY-25F3 in l... 40 7.4
50gb|AY106369.1| Zea mays PCO141497 mRNA sequence 40 7.4
51dbj|AP003027.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.4
52emb|CR761986.2| Xenopus tropicalis finished cDNA, clone TEgg011j18 40 7.4
53emb|BX539316.6| Mouse DNA sequence from clone RP24-216F23 on chr... 40 7.4 
>ref|XM_468115.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1331

 Score =  375 bits (189), Expect = e-100
 Identities = 294/329 (89%)
 Strand = Plus / Minus

                                                                       
Query: 217 gactattcacaggaacttggacaccacgcggcaggatgtccagaaggccgctgttgctgc 276
           |||||||||||| ||||||||  | || |||||||| ||||||||||| || ||||||||
Sbjct: 945 gactattcacagaaacttggatgctacacggcaggaagtccagaaggcagcagttgctgc 886

                                                                       
Query: 277 ttttagaatcgccggattctggtagataccaatagctgtcgcactccatgatgctacatt 336
           ||||||||| || |||||||||||||| |||||||| || |||||||||||||||| |||
Sbjct: 885 ttttagaattgctggattctggtagatgccaatagcagttgcactccatgatgctatatt 826

                                                                       
Query: 337 ataaataacttgtgttccagcccatgccttctgaagtttgcctttcctctttttagttga 396
           ||||||||||| ||||||| ||||||| |||||||| |||| ||||||||| |||| |||
Sbjct: 825 ataaataacttttgttccatcccatgctttctgaagcttgcttttcctcttcttagctga 766

                                                                       
Query: 397 aaaagtcttgctaagggcttcttgaagttgattgggcgtcaattccttagtttctttcag 456
           ||| ||||||||||| |||| |||||||||||| || ||||| |||||||||| ||||||
Sbjct: 765 aaaggtcttgctaagagcttgttgaagttgattaggtgtcaagtccttagtttgtttcag 706

                                                                       
Query: 457 cgacagcaggtatgcagccatgaagcatgcaatcccatcaactatatcctcttgcttaac 516
           |||||||| ||||||||||||||||| |||||| ||||||||||| |||||||| |||| 
Sbjct: 705 cgacagcaagtatgcagccatgaagcttgcaataccatcaactatgtcctcttgtttaat 646

                                        
Query: 517 tagaacatatccatcctctgaatcatcac 545
            ||||||||||||||||||||||||||||
Sbjct: 645 gagaacatatccatcctctgaatcatcac 617
to top
>dbj|AK061791.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-F04, full
           insert sequence
          Length = 1331

 Score =  375 bits (189), Expect = e-100
 Identities = 294/329 (89%)
 Strand = Plus / Minus

                                                                       
Query: 217 gactattcacaggaacttggacaccacgcggcaggatgtccagaaggccgctgttgctgc 276
           |||||||||||| ||||||||  | || |||||||| ||||||||||| || ||||||||
Sbjct: 945 gactattcacagaaacttggatgctacacggcaggaagtccagaaggcagcagttgctgc 886

                                                                       
Query: 277 ttttagaatcgccggattctggtagataccaatagctgtcgcactccatgatgctacatt 336
           ||||||||| || |||||||||||||| |||||||| || |||||||||||||||| |||
Sbjct: 885 ttttagaattgctggattctggtagatgccaatagcagttgcactccatgatgctatatt 826

                                                                       
Query: 337 ataaataacttgtgttccagcccatgccttctgaagtttgcctttcctctttttagttga 396
           ||||||||||| ||||||| ||||||| |||||||| |||| ||||||||| |||| |||
Sbjct: 825 ataaataacttttgttccatcccatgctttctgaagcttgcttttcctcttcttagctga 766

                                                                       
Query: 397 aaaagtcttgctaagggcttcttgaagttgattgggcgtcaattccttagtttctttcag 456
           ||| ||||||||||| |||| |||||||||||| || ||||| |||||||||| ||||||
Sbjct: 765 aaaggtcttgctaagagcttgttgaagttgattaggtgtcaagtccttagtttgtttcag 706

                                                                       
Query: 457 cgacagcaggtatgcagccatgaagcatgcaatcccatcaactatatcctcttgcttaac 516
           |||||||| ||||||||||||||||| |||||| ||||||||||| |||||||| |||| 
Sbjct: 705 cgacagcaagtatgcagccatgaagcttgcaataccatcaactatgtcctcttgtttaat 646

                                        
Query: 517 tagaacatatccatcctctgaatcatcac 545
            ||||||||||||||||||||||||||||
Sbjct: 645 gagaacatatccatcctctgaatcatcac 617
to top
>gb|AY224477.1| Oryza sativa (japonica cultivar-group) isolate 29089 unknown mRNA
          Length = 1132

 Score =  313 bits (158), Expect = 3e-82
 Identities = 281/330 (85%), Gaps = 1/330 (0%)
 Strand = Plus / Minus

                                                                       
Query: 217 gactattcacaggaacttggacaccacgcggcaggatgtccagaaggccgctgttgctgc 276
           |||||||||||| ||||||||  | || |||||||| ||||||||||| || ||||||||
Sbjct: 973 gactattcacagaaacttggatgctacacggcaggaagtccagaaggcagcagttgctgc 914

                                                                       
Query: 277 ttttagaatcgccggattctggtagataccaatagctgtcgcactcc-atgatgctacat 335
           ||||||||| || |||||||||||||| |||||||| || ||||||| | |||| || ||
Sbjct: 913 ttttagaattgctggattctggtagatgccaatagcagttgcactcccawgatgstatat 854

                                                                       
Query: 336 tataaataacttgtgttccagcccatgccttctgaagtttgcctttcctctttttagttg 395
           |||||||||||| ||||||| |||  |  ||||||||  ||  ||||||||| |||| | 
Sbjct: 853 tataaataacttttgttccatcccmwgsyttctgaagcktgsttttcctcttcttagctr 794

                                                                       
Query: 396 aaaaagtcttgctaagggcttcttgaagttgattgggcgtcaattccttagtttctttca 455
           |||| ||||||||||| |||| |||||||||||| || | ||| || ||||||| |||||
Sbjct: 793 aaaaggtcttgctaagagcttgttgaagttgattaggkgycaagtcyttagtttgtttca 734

                                                                       
Query: 456 gcgacagcaggtatgcagccatgaagcatgcaatcccatcaactatatcctcttgcttaa 515
           ||||||||| |||||||||||| ||||  ||||| ||||||||||| ||||| || ||||
Sbjct: 733 gcgacagcaagtatgcagccatsaagctkgcaataccatcaactatgtcctcktgtttaa 674

                                         
Query: 516 ctagaacatatccatcctctgaatcatcac 545
             ||||||||||||||||||||||||||||
Sbjct: 673 tgagaacatatccatcctctgaatcatcac 644
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  145 bits (73), Expect = 2e-31
 Identities = 97/105 (92%)
 Strand = Plus / Plus

                                                                            
Query: 441      ccttagtttctttcagcgacagcaggtatgcagccatgaagcatgcaatcccatcaacta 500
                ||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct: 33144452 ccttagtttgtttcagcgacagcaagtatgcagccatgaagcttgcaataccatcaacta 33144511

                                                             
Query: 501      tatcctcttgcttaactagaacatatccatcctctgaatcatcac 545
                | |||||||| ||||  ||||||||||||||||||||||||||||
Sbjct: 33144512 tgtcctcttgtttaatgagaacatatccatcctctgaatcatcac 33144556



 Score =  125 bits (63), Expect = 2e-25
 Identities = 96/107 (89%)
 Strand = Plus / Plus

                                                                            
Query: 305      ccaatagctgtcgcactccatgatgctacattataaataacttgtgttccagcccatgcc 364
                |||||||| || |||||||||||||||| |||||||||||||| ||||||| ||||||| 
Sbjct: 33143946 ccaatagcagttgcactccatgatgctatattataaataacttttgttccatcccatgct 33144005

                                                               
Query: 365      ttctgaagtttgcctttcctctttttagttgaaaaagtcttgctaag 411
                |||||||| |||| ||||||||| |||| |||||| |||||||||||
Sbjct: 33144006 ttctgaagcttgcttttcctcttcttagctgaaaaggtcttgctaag 33144052



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                            
Query: 217      gactattcacaggaacttggacaccacgcggcaggatgtccagaaggccgctgttgctgc 276
                |||||||||||| ||||||||  | || |||||||| ||||||||||| || ||||||||
Sbjct: 33143377 gactattcacagaaacttggatgctacacggcaggaagtccagaaggcagcagttgctgc 33143436

                                           
Query: 277      ttttagaatcgccggattctggtagat 303
                ||||||||| || ||||||||||||||
Sbjct: 33143437 ttttagaattgctggattctggtagat 33143463
to top
>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1369_G08
          Length = 104190

 Score =  145 bits (73), Expect = 2e-31
 Identities = 97/105 (92%)
 Strand = Plus / Plus

                                                                         
Query: 441   ccttagtttctttcagcgacagcaggtatgcagccatgaagcatgcaatcccatcaacta 500
             ||||||||| |||||||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct: 60112 ccttagtttgtttcagcgacagcaagtatgcagccatgaagcttgcaataccatcaacta 60171

                                                          
Query: 501   tatcctcttgcttaactagaacatatccatcctctgaatcatcac 545
             | |||||||| ||||  ||||||||||||||||||||||||||||
Sbjct: 60172 tgtcctcttgtttaatgagaacatatccatcctctgaatcatcac 60216



 Score =  125 bits (63), Expect = 2e-25
 Identities = 96/107 (89%)
 Strand = Plus / Plus

                                                                         
Query: 305   ccaatagctgtcgcactccatgatgctacattataaataacttgtgttccagcccatgcc 364
             |||||||| || |||||||||||||||| |||||||||||||| ||||||| ||||||| 
Sbjct: 59606 ccaatagcagttgcactccatgatgctatattataaataacttttgttccatcccatgct 59665

                                                            
Query: 365   ttctgaagtttgcctttcctctttttagttgaaaaagtcttgctaag 411
             |||||||| |||| ||||||||| |||| |||||| |||||||||||
Sbjct: 59666 ttctgaagcttgcttttcctcttcttagctgaaaaggtcttgctaag 59712



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                         
Query: 217   gactattcacaggaacttggacaccacgcggcaggatgtccagaaggccgctgttgctgc 276
             |||||||||||| ||||||||  | || |||||||| ||||||||||| || ||||||||
Sbjct: 59037 gactattcacagaaacttggatgctacacggcaggaagtccagaaggcagcagttgctgc 59096

                                        
Query: 277   ttttagaatcgccggattctggtagat 303
             ||||||||| || ||||||||||||||
Sbjct: 59097 ttttagaattgctggattctggtagat 59123
to top
>ref|XM_450925.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1093

 Score =  101 bits (51), Expect = 2e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                       
Query: 291 gattctggtagataccaatagctgtcgcactccatgatgctacattataaataacttgtg 350
           |||| |||||||| ||||||||||| |||||||||||  |||||||||||||||||| ||
Sbjct: 829 gattatggtagattccaatagctgtggcactccatgaatctacattataaataacttttg 770

                                                                  
Query: 351 ttccagcccatgccttctgaagtttgcctttcctctttttagttgaaaaagtctt 405
           | |||  |||||||||| ||||||| ||||| ||||||  || |||||| |||||
Sbjct: 769 tcccattccatgccttccgaagtttaccttttctctttcgagatgaaaatgtctt 715
to top
>dbj|AK109671.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-B02, full
           insert sequence
          Length = 1093

 Score =  101 bits (51), Expect = 2e-18
 Identities = 99/115 (86%)
 Strand = Plus / Minus

                                                                       
Query: 291 gattctggtagataccaatagctgtcgcactccatgatgctacattataaataacttgtg 350
           |||| |||||||| ||||||||||| |||||||||||  |||||||||||||||||| ||
Sbjct: 829 gattatggtagattccaatagctgtggcactccatgaatctacattataaataacttttg 770

                                                                  
Query: 351 ttccagcccatgccttctgaagtttgcctttcctctttttagttgaaaaagtctt 405
           | |||  |||||||||| ||||||| ||||| ||||||  || |||||| |||||
Sbjct: 769 tcccattccatgccttccgaagtttaccttttctctttcgagatgaaaatgtctt 715
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                            
Query: 305      ccaatagctgtcgcactccatgatgctacattataaataacttgtgttccagcccatgcc 364
                ||||||||||| |||||||||||  |||||||||||||||||| ||| |||  |||||||
Sbjct: 17593091 ccaatagctgtggcactccatgaatctacattataaataacttttgtcccattccatgcc 17593032

                                                         
Query: 365      ttctgaagtttgcctttcctctttttagttgaaaaagtctt 405
                ||| ||||||| ||||| ||||||  || |||||| |||||
Sbjct: 17593031 ttccgaagtttaccttttctctttcgagatgaaaatgtctt 17592991
to top
>dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1005_D12
          Length = 150588

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                         
Query: 305   ccaatagctgtcgcactccatgatgctacattataaataacttgtgttccagcccatgcc 364
             ||||||||||| |||||||||||  |||||||||||||||||| ||| |||  |||||||
Sbjct: 41813 ccaatagctgtggcactccatgaatctacattataaataacttttgtcccattccatgcc 41754

                                                      
Query: 365   ttctgaagtttgcctttcctctttttagttgaaaaagtctt 405
             ||| ||||||| ||||| ||||||  || |||||| |||||
Sbjct: 41753 ttccgaagtttaccttttctctttcgagatgaaaatgtctt 41713
to top
>gb|AY104988.1| Zea mays PCO117307 mRNA sequence
          Length = 610

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 89/107 (83%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                       
Query: 322 ccatgatgctacattataaataacttgtgttccagcccatgccttctgaagtttgccttt 381
           |||||| || ||||||||||| ||||  |||||| ||||||||||| | | ||| | |||
Sbjct: 414 ccatgaagcaacattataaatgactttagttccatcccatgccttccggattttactttt 355

                                                          
Query: 382 cctctttttagttgaaaaagtcttgctaagggcttcttgaagttgat 428
           | |||||| || |||||| ||||| ||||| |||| |||||||||||
Sbjct: 354 cttcttttcagctgaaaacgtcttcctaagcgctt-ttgaagttgat 309
to top
>gb|BT017915.1| Zea mays clone EL01N0518E08.c mRNA sequence
          Length = 1130

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 488 atcccatcaactatatcctcttgcttaactagaacatatccatcctctg 536
           ||||||||||| | ||| || |||||||| |||||||||||||| ||||
Sbjct: 544 atcccatcaaccacatcttcctgcttaacaagaacatatccatcatctg 496
to top
>emb|BX572098.1| Prochlorococcus marinus MIT9313 complete genome; segment 4/7
          Length = 346683

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 81     ggtttgagctgacgcatgatct 102
              ||||||||||||||||||||||
Sbjct: 289200 ggtttgagctgacgcatgatct 289221
to top
>emb|AL929410.7| Human DNA sequence from clone RP11-234P3 on chromosome X Contains the
             MAGED1 gene for melanoma antigen, family D, 1, a
             pseudogene similar to part of PFKFB1
             (6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1), a
             pseudogene similar to part of IPO7 (importin 7), a
             ubiquinol-cytochrome c reductase complex (7.2 kD)
             (HSPC051) pseudogene and a thiopurine S-methyltransferase
             (TMPT) pseudogene, complete sequence
          Length = 186649

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    aggaagctcactcaacagcta 47
             |||||||||||||||||||||
Sbjct: 21489 aggaagctcactcaacagcta 21509
to top
>ref|NM_118592.2| Arabidopsis thaliana unknown protein AT4G24590 mRNA, complete cds
          Length = 1021

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 320 ctccatgatgctacattataaataactt 347
           |||||||||||||| || ||||||||||
Sbjct: 742 ctccatgatgctacgttgtaaataactt 715
to top
>gb|AC113446.10| Mus musculus chromosome 5, clone RP23-258C6, complete sequence
          Length = 158563

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 386    tttttagttgaaaaagtctt 405
              ||||||||||||||||||||
Sbjct: 145710 tttttagttgaaaaagtctt 145729
to top
>gb|AC144927.5| Mus musculus chromosome 5, clone RP23-464P20, complete sequence
          Length = 192593

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   tttttagttgaaaaagtctt 405
             ||||||||||||||||||||
Sbjct: 34051 tttttagttgaaaaagtctt 34070
to top
>ref|XM_426625.1| PREDICTED: Gallus gallus similar to Ras GTPase-activating protein
           nGAP (RAS protein activator like 1) (LOC429069), mRNA
          Length = 7494

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 458 gacagcaggtatgcagccatgaagcatg 485
           ||||||||||||||||| | ||||||||
Sbjct: 892 gacagcaggtatgcagcaaagaagcatg 865
to top
>gb|BC073208.1| Xenopus laevis LIM protein prickle b, mRNA (cDNA clone MGC:80487
            IMAGE:5156646), complete cds
          Length = 4186

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  gctacattataaataacttg 348
            ||||||||||||||||||||
Sbjct: 3724 gctacattataaataacttg 3705
to top
>gb|AC147348.2| Xenopus tropicalis clone CH216-122H9, complete sequence
          Length = 161088

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   gctacattataaataacttg 348
             ||||||||||||||||||||
Sbjct: 41305 gctacattataaataacttg 41324
to top
>gb|AC146197.3| Pan troglodytes BAC clone CH251-450H3 from Y, complete sequence
          Length = 182113

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 104   acagttgaaagtaacctatgatga 127
             |||||||||||||||||| |||||
Sbjct: 73670 acagttgaaagtaacctaagatga 73647
to top
>gb|AC137123.7| Mus musculus chromosome 15, clone RP23-401L15, complete sequence
          Length = 232054

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   cttgtgttccagcccatgcc 364
             ||||||||||||||||||||
Sbjct: 92948 cttgtgttccagcccatgcc 92967
to top
>gb|AC183669.3| Pan troglodytes BAC clone CH251-549L23 from chromosome 19, complete
             sequence
          Length = 139061

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   aagtttgcctttcctctttt 389
             ||||||||||||||||||||
Sbjct: 51676 aagtttgcctttcctctttt 51657
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 225     acaggaacttggacaccacgcggc 248
               ||||||||||||||||| ||||||
Sbjct: 4514216 acaggaacttggacaccgcgcggc 4514193
to top
>gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome 12, complete sequence
          Length = 193610

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    attatcatacaatgtgtaca 207
              ||||||||||||||||||||
Sbjct: 158342 attatcatacaatgtgtaca 158361
to top
>gb|AC123822.4| Mus musculus BAC clone RP23-477F12 from chromosome 7, complete sequence
          Length = 179943

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 479    aagcatgcaatcccatcaac 498
              ||||||||||||||||||||
Sbjct: 111790 aagcatgcaatcccatcaac 111771
to top
>gb|AC146290.1| Pan troglodytes BAC clone CH251-549P23 from Y, complete sequence
          Length = 176345

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 104  acagttgaaagtaacctatgatga 127
            |||||||||||||||||| |||||
Sbjct: 3364 acagttgaaagtaacctaagatga 3341
to top
>emb|AL831720.4| Human DNA sequence from clone RP11-441K23 on chromosome 1, complete
             sequence
          Length = 109218

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   ctgttgctgcttttagaatc 286
             ||||||||||||||||||||
Sbjct: 11779 ctgttgctgcttttagaatc 11760
to top
>emb|AL590678.3| Human DNA sequence from clone RP11-141E7 on chromosome 6, complete
             sequence
          Length = 149849

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   ctgttgctgcttttagaatc 286
             ||||||||||||||||||||
Sbjct: 78228 ctgttgctgcttttagaatc 78247
to top
>emb|AL645800.5| Zebrafish DNA sequence from clone XX-184L24 Contains three novel genes
             and the spi1 gene for transcription factor spi1, complete
             sequence
          Length = 98204

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   ctgaagtttgcctttcctct 386
             ||||||||||||||||||||
Sbjct: 36248 ctgaagtttgcctttcctct 36229
to top
>emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61
          Length = 198402

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 320    ctccatgatgctacattataaataactt 347
              |||||||||||||| || ||||||||||
Sbjct: 165535 ctccatgatgctacgttgtaaataactt 165508
to top
>emb|AL035356.1|ATF22K18 Arabidopsis thaliana DNA chromosome 4, BAC clone  F22K18 (ESSAII
             project)
          Length = 125803

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 320   ctccatgatgctacattataaataactt 347
             |||||||||||||| || ||||||||||
Sbjct: 83375 ctccatgatgctacgttgtaaataactt 83402
to top
>gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome 12, complete sequence
          Length = 201524

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   attatcatacaatgtgtaca 207
             ||||||||||||||||||||
Sbjct: 53536 attatcatacaatgtgtaca 53555
to top
>ref|NM_001016939.1| Xenopus tropicalis PRICKLE1 protein (PRICKLE1), mRNA
          Length = 4361

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  gctacattataaataacttg 348
            ||||||||||||||||||||
Sbjct: 3863 gctacattataaataacttg 3844
to top
>gb|BC098954.1| Xenopus laevis LIM protein prickle, mRNA (cDNA clone MGC:114591
            IMAGE:6631640), complete cds
          Length = 4517

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  gctacattataaataacttg 348
            ||||||||||||||||||||
Sbjct: 4042 gctacattataaataacttg 4023
to top
>emb|BX510938.11| Zebrafish DNA sequence from clone DKEY-92K1 in linkage group 21, complete
              sequence
          Length = 230957

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 379    tttcctctttttagttgaaa 398
              ||||||||||||||||||||
Sbjct: 222385 tttcctctttttagttgaaa 222366
to top
>gb|AC151819.2| Xenopus tropicalis BAC clone ISB1-243M8 containing hairy2 gene,
             complete cds, complete sequence
          Length = 91756

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   caattccttagtttctttca 455
             ||||||||||||||||||||
Sbjct: 31312 caattccttagtttctttca 31293
to top
>dbj|BS000590.1| Pan troglodytes chromosome Y clone:PTB-194A24, complete sequence
          Length = 219969

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 104   acagttgaaagtaacctatgatga 127
             |||||||||||||||||| |||||
Sbjct: 22779 acagttgaaagtaacctaagatga 22756
to top
>dbj|BS000536.1| Pan troglodytes chromosome Y clone:PTB-100K06, complete sequences
          Length = 204391

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 104   acagttgaaagtaacctatgatga 127
             |||||||||||||||||| |||||
Sbjct: 47223 acagttgaaagtaacctaagatga 47246
to top
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 104      acagttgaaagtaacctatgatga 127
                |||||||||||||||||| |||||
Sbjct: 20936218 acagttgaaagtaacctaagatga 20936241
to top
>gb|AC098827.3| Homo sapiens BAC clone RP11-640B6 from 4, complete sequence
          Length = 200914

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   ctgttgctgcttttagaatc 286
             ||||||||||||||||||||
Sbjct: 95346 ctgttgctgcttttagaatc 95327
to top
>gb|AC016546.6| Homo sapiens chromosome 5 clone CTC-232H10, complete sequence
          Length = 109918

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 445   agtttctttcagcgacagcaggta 468
             |||||||||||| |||||||||||
Sbjct: 62964 agtttctttcagggacagcaggta 62941
to top
>gb|AY055473.1| Xenopus laevis LIM protein prickle b mRNA, complete cds
          Length = 4174

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  gctacattataaataacttg 348
            ||||||||||||||||||||
Sbjct: 3713 gctacattataaataacttg 3694
to top
>gb|AF387815.1|AF387815 Xenopus laevis LIM protein prickle (PRICKLE) mRNA, complete cds
          Length = 4579

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  gctacattataaataacttg 348
            ||||||||||||||||||||
Sbjct: 4101 gctacattataaataacttg 4082
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 520     aacatatccatcctctgaat 539
               ||||||||||||||||||||
Sbjct: 6826795 aacatatccatcctctgaat 6826814
to top
>gb|AC010726.4|AC010726 Homo sapiens BAC clone RP11-224C16 from Y, complete sequence
          Length = 176524

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 104   acagttgaaagtaacctatgatga 127
             |||||||||||||||||| |||||
Sbjct: 67312 acagttgaaagtaacctaagatga 67289
to top
>dbj|AP005197.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0592C06
          Length = 160071

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 520    aacatatccatcctctgaat 539
              ||||||||||||||||||||
Sbjct: 120929 aacatatccatcctctgaat 120948
to top
>emb|AL928990.4| Zebrafish DNA sequence from clone CH211-11F8, complete sequence
          Length = 185618

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 386    tttttagttgaaaaagtctt 405
              ||||||||||||||||||||
Sbjct: 120379 tttttagttgaaaaagtctt 120398
to top
>dbj|AK117386.1| Arabidopsis thaliana At4g24590 mRNA for unknown protein, complete
           cds, clone: RAFL16-97-A12
          Length = 1021

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 320 ctccatgatgctacattataaataactt 347
           |||||||||||||| || ||||||||||
Sbjct: 742 ctccatgatgctacgttgtaaataactt 715
to top
>emb|BX470160.9| Zebrafish DNA sequence from clone DKEY-25F3 in linkage group 18, complete
              sequence
          Length = 207501

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    ctttttagttgaaaaagtct 404
              ||||||||||||||||||||
Sbjct: 178313 ctttttagttgaaaaagtct 178332
to top
>gb|AY106369.1| Zea mays PCO141497 mRNA sequence
          Length = 669

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 502 atcctcttgcttaactagaacatatccatcctctga 537
           |||||| |||||||| || ||||||||||| |||||
Sbjct: 663 atcctcctgcttaaccagtacatatccatcatctga 628
to top
>dbj|AP003027.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-25I9, complete
              sequence
          Length = 167067

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    ctgttgctgcttttagaatc 286
              ||||||||||||||||||||
Sbjct: 149297 ctgttgctgcttttagaatc 149316
to top
>emb|CR761986.2| Xenopus tropicalis finished cDNA, clone TEgg011j18
          Length = 4361

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 329  gctacattataaataacttg 348
            ||||||||||||||||||||
Sbjct: 3863 gctacattataaataacttg 3844
to top
>emb|BX539316.6| Mouse DNA sequence from clone RP24-216F23 on chromosome 7, complete
              sequence
          Length = 178673

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 479    aagcatgcaatcccatcaac 498
              ||||||||||||||||||||
Sbjct: 166312 aagcatgcaatcccatcaac 166331


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,582,980
Number of Sequences: 3902068
Number of extensions: 4582980
Number of successful extensions: 85315
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85142
Number of HSP's gapped (non-prelim): 172
length of query: 545
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 522
effective length of database: 17,143,297,704
effective search space: 8948801401488
effective search space used: 8948801401488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top