ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19o05 |
|---|---|
| Clone Library Name | barley_pub |
>MCPA_CAUCR (Q00986) Chemoreceptor mcpA (Methyl-accepting chemotaxis protein)| Length = 657 Score = 31.2 bits (69), Expect = 3.1 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 7/57 (12%) Frame = -1 Query: 404 GSDIIKRPTKLGAAAEPGHRHGPARDPAAEQRAGV-------RS*GHLQPAAIPMSD 255 GS RP A A+ GH H PAR+P AEQ+A + RS G A P SD Sbjct: 601 GSSSYARP----AVADAGH-HAPARNPVAEQQARLNTFARPGRSSGSAALAQAPASD 652
>Y1155_METJA (Q58555) UPF0313 protein MJ1155| Length = 603 Score = 30.4 bits (67), Expect = 5.3 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Frame = +2 Query: 59 KERLNLAK***QPNCYRSNLQVY--TNQTQPTYSVHTGLGTTVIAGTAADGKYPHGRPSK 232 KE + LA+ + NCY +QV+ T T T HTG+ Y + K Sbjct: 492 KEMIELAEFIHKNNCYSRQVQVFTPTPMTLSTTMYHTGINPITNEKVYVPYTYREKKIQK 551 Query: 233 RMLRYDRDHSWE 268 + Y + +WE Sbjct: 552 AICLYREEENWE 563
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 30.0 bits (66), Expect = 6.9 Identities = 19/56 (33%), Positives = 22/56 (39%) Frame = -2 Query: 385 GPPSWGPQQNQGIAMGQPVIPQQSSEPVFVHEDTYNRQQFP*VIAVISKHPFRGPP 218 GPP GP G+ M Q + PQQ S H + N P HP PP Sbjct: 549 GPPGHGPGPMPGMGMNQMLPPQQPSHLGPPHPNMMNHPHHP------HHHPGGPPP 598
>LPXD_VIBVU (Q8DBF1) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase| (EC 2.3.1.-) Length = 343 Score = 30.0 bits (66), Expect = 6.9 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 5/35 (14%) Frame = +2 Query: 122 VYTNQTQPTYSVHTGLGT-----TVIAGTAADGKY 211 V NQ Q ++VH G GT TV+AG+ GKY Sbjct: 230 VLDNQLQIAHNVHIGYGTVMPGGTVVAGSTTIGKY 264
>ARGC_GLOVI (Q7NE70) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 350 Score = 29.6 bits (65), Expect = 9.0 Identities = 17/57 (29%), Positives = 26/57 (45%) Frame = -1 Query: 428 GSGHSLLRGSDIIKRPTKLGAAAEPGHRHGPARDPAAEQRAGVRS*GHLQPAAIPMS 258 G+G +L GS + + + A + HRH P + AG+R P IPM+ Sbjct: 186 GAGRALKTGSLFAEADSSVAAYSVARHRHIPEIEQVCSDLAGMRVQVQFTPHLIPMA 242
>RADC_XYLFA (Q9PGZ8) DNA repair protein radC homolog| Length = 224 Score = 29.6 bits (65), Expect = 9.0 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%) Frame = -1 Query: 584 ILGHFH---NRVPSPADRSCTERPKGS 513 I+GH H NR PSPADR T+R K + Sbjct: 170 IVGHNHPSGNREPSPADRMITQRLKNA 196
>MATR3_RAT (P43244) Matrin-3 (Nuclear scaffold protein P130/MAT3)| Length = 845 Score = 29.6 bits (65), Expect = 9.0 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -2 Query: 379 PSWGPQQNQGIAMGQPVIPQQSSEP 305 P W P + G MG P + QQS+ P Sbjct: 327 PEWNPDNDTGHTMGDPFMLQQSTNP 351
>KCND3_RAT (Q62897) Potassium voltage-gated channel subfamily D member 3| (Voltage-gated potassium channel subunit Kv4.3) Length = 655 Score = 29.6 bits (65), Expect = 9.0 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 Query: 92 QPNCYRSNLQVYTNQTQPTYSVHTGLGTT 178 + NC S++Q Y + P+ S H+GL TT Sbjct: 517 EQNCMESSMQNYPSTRSPSLSSHSGLTTT 545
>KCND3_MOUSE (Q9Z0V1) Potassium voltage-gated channel subfamily D member 3| (Voltage-gated potassium channel subunit Kv4.3) Length = 655 Score = 29.6 bits (65), Expect = 9.0 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +2 Query: 92 QPNCYRSNLQVYTNQTQPTYSVHTGLGTT 178 + NC S++Q Y + P+ S H+GL TT Sbjct: 517 EQNCMESSMQNYPSTRSPSLSSHSGLTTT 545
>MATR3_HUMAN (P43243) Matrin-3| Length = 847 Score = 29.6 bits (65), Expect = 9.0 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -2 Query: 379 PSWGPQQNQGIAMGQPVIPQQSSEP 305 P W P + G MG P + QQS+ P Sbjct: 327 PEWNPDNDTGHTMGDPFMLQQSTNP 351
>FUT8_DROME (Q9VYV5) Alpha-(1,6)-fucosyltransferase (EC 2.4.1.68) (Glycoprotein| 6-alpha-L-fucosyltransferase) (GDP-fucose--glycoprotein fucosyltransferase) (GDP-L-Fuc:N-acetyl-beta-D-glucosaminide alpha1,6-fucosyltransferase) (alpha1-6FucT) Length = 619 Score = 29.6 bits (65), Expect = 9.0 Identities = 11/41 (26%), Positives = 22/41 (53%) Frame = -2 Query: 625 SDTNWSVALISFIVSWVTFIIAFLLLLTGAALNDQRGQENM 503 S +W+ ALI F+++W+ + F++ LT G+ + Sbjct: 11 SANSWARALIIFVLAWIGLVYVFVVKLTNTQGQQAAGESEL 51
>MATR3_MOUSE (Q8K310) Matrin-3| Length = 846 Score = 29.6 bits (65), Expect = 9.0 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -2 Query: 379 PSWGPQQNQGIAMGQPVIPQQSSEP 305 P W P + G MG P + QQS+ P Sbjct: 327 PEWNPDNDTGHTMGDPFMLQQSTNP 351
>LPXD_VIBVY (Q7MIH0) UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase| (EC 2.3.1.-) Length = 343 Score = 29.6 bits (65), Expect = 9.0 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 5/35 (14%) Frame = +2 Query: 122 VYTNQTQPTYSVHTGLGT-----TVIAGTAADGKY 211 V NQ Q ++VH G GT T++AG+ GKY Sbjct: 230 VLDNQLQIAHNVHIGYGTVMPGGTIVAGSTTIGKY 264 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,184,045 Number of Sequences: 219361 Number of extensions: 2125559 Number of successful extensions: 6127 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5845 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6125 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6825954960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
