Clone Name | rbasd19o05 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_185426.2| Oryza sativa (japonica cultivar-group), mRNA Length = 960 Score = 454 bits (229), Expect = e-124 Identities = 370/417 (88%) Strand = Plus / Minus Query: 262 atgggaattgctgccggttgtaggtgtcctcatgaacgaacaccggctcgctgctctgct 321 |||||||||||||||| |||||||||||||| || || |||||||| ||||||||||| Sbjct: 747 atgggaattgctgccgattgtaggtgtcctcgtggacaaacaccggttcgctgctctgtg 688 Query: 322 gcgggatcacgggctggcccatggcgatgccctggttctgctgcggcccccagcttggtg 381 | |||||||| || ||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 687 gagggatcacaggttggcccatggcgatgccttggttctgctggggaccccaatttggtg 628 Query: 382 ggccttttgatgatgtcagagccacgtagtagactatggccagagccacgctggcgaggg 441 | | ||| | |||| || || |||||||| ||||| ||||| ||||||||||| || | Sbjct: 627 gacttttcgccgatgatagggcaacgtagtaaactattgccagtgccacgctggcaagtg 568 Query: 442 agagcaccgctcctccggagaagacccctggcttgacgacgtagcagaagctgccgaagt 501 ||||||| || ||||| || ||||||||||||||||| ||||||||||||||||| |||| Sbjct: 567 agagcactgcccctccagaaaagacccctggcttgacaacgtagcagaagctgccaaagt 508 Query: 502 acatgttctcctgacccctttggtcgttcagtgcagctccggtcagcaggagaaggaacg 561 |||||||||||| ||||| ||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 507 acatgttctcctcaccccgttgatcgttaagtgcagctccggtcagtaggagaaggaacg 448 Query: 562 cgattatgaaagtgacccaagatacgatgaatgagatcagagctacactccagttagtgt 621 |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct: 447 cgattatgaaagtggcccaagacacgatgaatgagatcagagctacgctccagttagtgt 388 Query: 622 ctgaggggaccggatgcctcttacaacagatgcaaccagcaactgtgtttataatag 678 ||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 387 ctgagggaactggatgcctcttacaacagatgcaaccagccactgtatttataatag 331 Score = 48.1 bits (24), Expect = 0.038 Identities = 36/40 (90%) Strand = Plus / Minus Query: 99 actgctatcgttctaacctgcaggtctatacaaaccaaac 138 ||||||| ||||||||||| ||| ||||||||||||||| Sbjct: 835 actgctactgttctaacctggaggcctatacaaaccaaac 796
>dbj|AK061552.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B09, full insert sequence Length = 1057 Score = 454 bits (229), Expect = e-124 Identities = 370/417 (88%) Strand = Plus / Minus Query: 262 atgggaattgctgccggttgtaggtgtcctcatgaacgaacaccggctcgctgctctgct 321 |||||||||||||||| |||||||||||||| || || |||||||| ||||||||||| Sbjct: 822 atgggaattgctgccgattgtaggtgtcctcgtggacaaacaccggttcgctgctctgtg 763 Query: 322 gcgggatcacgggctggcccatggcgatgccctggttctgctgcggcccccagcttggtg 381 | |||||||| || ||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 762 gagggatcacaggttggcccatggcgatgccttggttctgctggggaccccaatttggtg 703 Query: 382 ggccttttgatgatgtcagagccacgtagtagactatggccagagccacgctggcgaggg 441 | | ||| | |||| || || |||||||| ||||| ||||| ||||||||||| || | Sbjct: 702 gacttttcgccgatgatagggcaacgtagtaaactattgccagtgccacgctggcaagtg 643 Query: 442 agagcaccgctcctccggagaagacccctggcttgacgacgtagcagaagctgccgaagt 501 ||||||| || ||||| || ||||||||||||||||| ||||||||||||||||| |||| Sbjct: 642 agagcactgcccctccagaaaagacccctggcttgacaacgtagcagaagctgccaaagt 583 Query: 502 acatgttctcctgacccctttggtcgttcagtgcagctccggtcagcaggagaaggaacg 561 |||||||||||| ||||| ||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 582 acatgttctcctcaccccgttgatcgttaagtgcagctccggtcagtaggagaaggaacg 523 Query: 562 cgattatgaaagtgacccaagatacgatgaatgagatcagagctacactccagttagtgt 621 |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct: 522 cgattatgaaagtggcccaagacacgatgaatgagatcagagctacgctccagttagtgt 463 Query: 622 ctgaggggaccggatgcctcttacaacagatgcaaccagcaactgtgtttataatag 678 ||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 462 ctgagggaactggatgcctcttacaacagatgcaaccagccactgtatttataatag 406 Score = 48.1 bits (24), Expect = 0.038 Identities = 36/40 (90%) Strand = Plus / Minus Query: 99 actgctatcgttctaacctgcaggtctatacaaaccaaac 138 ||||||| ||||||||||| ||| ||||||||||||||| Sbjct: 910 actgctactgttctaacctggaggcctatacaaaccaaac 871
>dbj|AK122142.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136J12, full insert sequence Length = 1035 Score = 446 bits (225), Expect = e-122 Identities = 369/417 (88%) Strand = Plus / Minus Query: 262 atgggaattgctgccggttgtaggtgtcctcatgaacgaacaccggctcgctgctctgct 321 |||||||||||||||| |||||||||||||| || || |||||||| ||||||||||| Sbjct: 800 atgggaattgctgccgattgtaggtgtcctcgtggacaaacaccggttcgctgctctgtg 741 Query: 322 gcgggatcacgggctggcccatggcgatgccctggttctgctgcggcccccagcttggtg 381 | |||||||| || ||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 740 gagggatcacaggttggcccatggcgatgccttggttctgctggggaccccaatttggtg 681 Query: 382 ggccttttgatgatgtcagagccacgtagtagactatggccagagccacgctggcgaggg 441 | | ||| | |||| || || |||||||| ||||| ||||| ||||||||||| || | Sbjct: 680 gacttttcgccgatgatagggcaacgtagtaaactattgccagtgccacgctggcaagtg 621 Query: 442 agagcaccgctcctccggagaagacccctggcttgacgacgtagcagaagctgccgaagt 501 ||||||| || ||||| || ||||||||||||| ||| ||||||||||||||||| |||| Sbjct: 620 agagcactgcccctccagaaaagacccctggctcgacaacgtagcagaagctgccaaagt 561 Query: 502 acatgttctcctgacccctttggtcgttcagtgcagctccggtcagcaggagaaggaacg 561 |||||||||||| ||||| ||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 560 acatgttctcctcaccccgttgatcgttaagtgcagctccggtcagtaggagaaggaacg 501 Query: 562 cgattatgaaagtgacccaagatacgatgaatgagatcagagctacactccagttagtgt 621 |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct: 500 cgattatgaaagtggcccaagacacgatgaatgagatcagagctacgctccagttagtgt 441 Query: 622 ctgaggggaccggatgcctcttacaacagatgcaaccagcaactgtgtttataatag 678 ||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 440 ctgagggaactggatgcctcttacaacagatgcaaccagccactgtatttataatag 384 Score = 48.1 bits (24), Expect = 0.038 Identities = 36/40 (90%) Strand = Plus / Minus Query: 99 actgctatcgttctaacctgcaggtctatacaaaccaaac 138 ||||||| ||||||||||| ||| ||||||||||||||| Sbjct: 888 actgctactgttctaacctggaggcctatacaaaccaaac 849
>dbj|AK098848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D16, full insert sequence Length = 960 Score = 446 bits (225), Expect = e-122 Identities = 369/417 (88%) Strand = Plus / Minus Query: 262 atgggaattgctgccggttgtaggtgtcctcatgaacgaacaccggctcgctgctctgct 321 |||||||||||||||| |||||||||||||| || || |||||||| ||||||||||| Sbjct: 747 atgggaattgctgccgattgtaggtgtcctcgtggacaaacaccggttcgctgctctgtg 688 Query: 322 gcgggatcacgggctggcccatggcgatgccctggttctgctgcggcccccagcttggtg 381 | |||||||| || ||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 687 gagggatcacaggttggcccatggcgatgccttggttctgctggggaccccaatttggtg 628 Query: 382 ggccttttgatgatgtcagagccacgtagtagactatggccagagccacgctggcgaggg 441 | | ||| | |||| || || |||||||| ||||| ||||| ||||||||||| || | Sbjct: 627 gacttttcgccgatgatagggcaacgtagtaaactattgccagtgccacgctggcaagtg 568 Query: 442 agagcaccgctcctccggagaagacccctggcttgacgacgtagcagaagctgccgaagt 501 ||||||| || ||||| || ||||||||||||||||| ||||||||||||||||| |||| Sbjct: 567 agagcactgcccctccagaaaagacccctggcttgacaacgtagcagaagctgccaaagt 508 Query: 502 acatgttctcctgacccctttggtcgttcagtgcagctccggtcagcaggagaaggaacg 561 ||||| |||||| ||||| ||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 507 acatgctctcctcaccccgttgatcgttaagtgcagctccggtcagtaggagaaggaacg 448 Query: 562 cgattatgaaagtgacccaagatacgatgaatgagatcagagctacactccagttagtgt 621 |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct: 447 cgattatgaaagtggcccaagacacgatgaatgagatcagagctacgctccagttagtgt 388 Query: 622 ctgaggggaccggatgcctcttacaacagatgcaaccagcaactgtgtttataatag 678 ||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 387 ctgagggaactggatgcctcttacaacagatgcaaccagccactgtatttataatag 331 Score = 48.1 bits (24), Expect = 0.038 Identities = 36/40 (90%) Strand = Plus / Minus Query: 99 actgctatcgttctaacctgcaggtctatacaaaccaaac 138 ||||||| ||||||||||| ||| ||||||||||||||| Sbjct: 835 actgctactgttctaacctggaggcctatacaaaccaaac 796
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 305 bits (154), Expect = 1e-79 Identities = 274/314 (87%) Strand = Plus / Plus Query: 262 atgggaattgctgccggttgtaggtgtcctcatgaacgaacaccggctcgctgctctgct 321 |||||||||||||||| |||||||||||||| || || |||||||| ||||||||||| Sbjct: 840596 atgggaattgctgccgattgtaggtgtcctcgtggacaaacaccggttcgctgctctgtg 840655 Query: 322 gcgggatcacgggctggcccatggcgatgccctggttctgctgcggcccccagcttggtg 381 | |||||||| || ||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 840656 gagggatcacaggttggcccatggcgatgccttggttctgctggggaccccaatttggtg 840715 Query: 382 ggccttttgatgatgtcagagccacgtagtagactatggccagagccacgctggcgaggg 441 | | ||| | |||| || || |||||||| ||||| ||||| ||||||||||| || | Sbjct: 840716 gacttttcgccgatgatagggcaacgtagtaaactattgccagtgccacgctggcaagtg 840775 Query: 442 agagcaccgctcctccggagaagacccctggcttgacgacgtagcagaagctgccgaagt 501 ||||||| || ||||| || ||||||||||||||||| ||||||||||||||||| |||| Sbjct: 840776 agagcactgcccctccagaaaagacccctggcttgacaacgtagcagaagctgccaaagt 840835 Query: 502 acatgttctcctgacccctttggtcgttcagtgcagctccggtcagcaggagaaggaacg 561 |||||||||||| ||||| ||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 840836 acatgttctcctcaccccgttgatcgttaagtgcagctccggtcagtaggagaaggaacg 840895 Query: 562 cgattatgaaagtg 575 |||||||||||||| Sbjct: 840896 cgattatgaaagtg 840909 Score = 153 bits (77), Expect = 9e-34 Identities = 95/101 (94%) Strand = Plus / Plus Query: 578 ccaagatacgatgaatgagatcagagctacactccagttagtgtctgaggggaccggatg 637 |||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct: 841508 ccaagacacgatgaatgagatcagagctacgctccagttagtgtctgagggaactggatg 841567 Query: 638 cctcttacaacagatgcaaccagcaactgtgtttataatag 678 |||||||||||||||||||||||| ||||| |||||||||| Sbjct: 841568 cctcttacaacagatgcaaccagccactgtatttataatag 841608 Score = 48.1 bits (24), Expect = 0.038 Identities = 36/40 (90%) Strand = Plus / Plus Query: 99 actgctatcgttctaacctgcaggtctatacaaaccaaac 138 ||||||| ||||||||||| ||| ||||||||||||||| Sbjct: 840508 actgctactgttctaacctggaggcctatacaaaccaaac 840547
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0541H01 Length = 157519 Score = 305 bits (154), Expect = 1e-79 Identities = 274/314 (87%) Strand = Plus / Plus Query: 262 atgggaattgctgccggttgtaggtgtcctcatgaacgaacaccggctcgctgctctgct 321 |||||||||||||||| |||||||||||||| || || |||||||| ||||||||||| Sbjct: 123730 atgggaattgctgccgattgtaggtgtcctcgtggacaaacaccggttcgctgctctgtg 123789 Query: 322 gcgggatcacgggctggcccatggcgatgccctggttctgctgcggcccccagcttggtg 381 | |||||||| || ||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 123790 gagggatcacaggttggcccatggcgatgccttggttctgctggggaccccaatttggtg 123849 Query: 382 ggccttttgatgatgtcagagccacgtagtagactatggccagagccacgctggcgaggg 441 | | ||| | |||| || || |||||||| ||||| ||||| ||||||||||| || | Sbjct: 123850 gacttttcgccgatgatagggcaacgtagtaaactattgccagtgccacgctggcaagtg 123909 Query: 442 agagcaccgctcctccggagaagacccctggcttgacgacgtagcagaagctgccgaagt 501 ||||||| || ||||| || ||||||||||||||||| ||||||||||||||||| |||| Sbjct: 123910 agagcactgcccctccagaaaagacccctggcttgacaacgtagcagaagctgccaaagt 123969 Query: 502 acatgttctcctgacccctttggtcgttcagtgcagctccggtcagcaggagaaggaacg 561 |||||||||||| ||||| ||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 123970 acatgttctcctcaccccgttgatcgttaagtgcagctccggtcagtaggagaaggaacg 124029 Query: 562 cgattatgaaagtg 575 |||||||||||||| Sbjct: 124030 cgattatgaaagtg 124043 Score = 153 bits (77), Expect = 9e-34 Identities = 95/101 (94%) Strand = Plus / Plus Query: 578 ccaagatacgatgaatgagatcagagctacactccagttagtgtctgaggggaccggatg 637 |||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct: 124642 ccaagacacgatgaatgagatcagagctacgctccagttagtgtctgagggaactggatg 124701 Query: 638 cctcttacaacagatgcaaccagcaactgtgtttataatag 678 |||||||||||||||||||||||| ||||| |||||||||| Sbjct: 124702 cctcttacaacagatgcaaccagccactgtatttataatag 124742 Score = 48.1 bits (24), Expect = 0.038 Identities = 36/40 (90%) Strand = Plus / Plus Query: 99 actgctatcgttctaacctgcaggtctatacaaaccaaac 138 ||||||| ||||||||||| ||| ||||||||||||||| Sbjct: 123642 actgctactgttctaacctggaggcctatacaaaccaaac 123681
>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019F11 Length = 123673 Score = 305 bits (154), Expect = 1e-79 Identities = 274/314 (87%) Strand = Plus / Plus Query: 262 atgggaattgctgccggttgtaggtgtcctcatgaacgaacaccggctcgctgctctgct 321 |||||||||||||||| |||||||||||||| || || |||||||| ||||||||||| Sbjct: 21491 atgggaattgctgccgattgtaggtgtcctcgtggacaaacaccggttcgctgctctgtg 21550 Query: 322 gcgggatcacgggctggcccatggcgatgccctggttctgctgcggcccccagcttggtg 381 | |||||||| || ||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct: 21551 gagggatcacaggttggcccatggcgatgccttggttctgctggggaccccaatttggtg 21610 Query: 382 ggccttttgatgatgtcagagccacgtagtagactatggccagagccacgctggcgaggg 441 | | ||| | |||| || || |||||||| ||||| ||||| ||||||||||| || | Sbjct: 21611 gacttttcgccgatgatagggcaacgtagtaaactattgccagtgccacgctggcaagtg 21670 Query: 442 agagcaccgctcctccggagaagacccctggcttgacgacgtagcagaagctgccgaagt 501 ||||||| || ||||| || ||||||||||||||||| ||||||||||||||||| |||| Sbjct: 21671 agagcactgcccctccagaaaagacccctggcttgacaacgtagcagaagctgccaaagt 21730 Query: 502 acatgttctcctgacccctttggtcgttcagtgcagctccggtcagcaggagaaggaacg 561 |||||||||||| ||||| ||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 21731 acatgttctcctcaccccgttgatcgttaagtgcagctccggtcagtaggagaaggaacg 21790 Query: 562 cgattatgaaagtg 575 |||||||||||||| Sbjct: 21791 cgattatgaaagtg 21804 Score = 153 bits (77), Expect = 9e-34 Identities = 95/101 (94%) Strand = Plus / Plus Query: 578 ccaagatacgatgaatgagatcagagctacactccagttagtgtctgaggggaccggatg 637 |||||| ||||||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct: 22403 ccaagacacgatgaatgagatcagagctacgctccagttagtgtctgagggaactggatg 22462 Query: 638 cctcttacaacagatgcaaccagcaactgtgtttataatag 678 |||||||||||||||||||||||| ||||| |||||||||| Sbjct: 22463 cctcttacaacagatgcaaccagccactgtatttataatag 22503 Score = 48.1 bits (24), Expect = 0.038 Identities = 36/40 (90%) Strand = Plus / Plus Query: 99 actgctatcgttctaacctgcaggtctatacaaaccaaac 138 ||||||| ||||||||||| ||| ||||||||||||||| Sbjct: 21403 actgctactgttctaacctggaggcctatacaaaccaaac 21442
>gb|AY107559.1| Zea mays PCO061815 mRNA sequence Length = 827 Score = 295 bits (149), Expect = 1e-76 Identities = 257/293 (87%) Strand = Plus / Minus Query: 381 gggccttttgatgatgtcagagccacgtagtagactatggccagagccacgctggcgagg 440 ||||| || ||||||| ||| || ||||||||||||||||| || ||||||||||||||| Sbjct: 749 gggcccttggatgatgacagcgcgacgtagtagactatggctagcgccacgctggcgagg 690 Query: 441 gagagcaccgctcctccggagaagacccctggcttgacgacgtagcagaagctgccgaag 500 | ||||||||||| ||||||||||| || ||||| || |||||||||||||| |||||| Sbjct: 689 gccagcaccgctcccccggagaagacacccggcttcaccacgtagcagaagctaccgaag 630 Query: 501 tacatgttctcctgacccctttggtcgttcagtgcagctccggtcagcaggagaaggaac 560 ||||||||||||| || || ||||||||||| ||||| || ||||| |||||||||||| Sbjct: 629 tacatgttctcctcgcctctctggtcgttcagggcagccccagtcagtaggagaaggaac 570 Query: 561 gcgattatgaaagtgacccaagatacgatgaatgagatcagagctacactccagttagtg 620 | ||||||||||||| ||||||||||||||| || ||||| |||| |||||||||||| Sbjct: 569 gagattatgaaagtgcaccaagatacgatgaacgaaatcagggctatgctccagttagtg 510 Query: 621 tctgaggggaccggatgcctcttacaacagatgcaaccagcaactgtgtttat 673 |||||||| || |||||| |||||||||||||||||||||| |||| |||||| Sbjct: 509 tctgagggaacaggatgcttcttacaacagatgcaaccagccactgcgtttat 457 Score = 69.9 bits (35), Expect = 1e-08 Identities = 52/57 (91%), Gaps = 3/57 (5%) Strand = Plus / Minus Query: 309 tcgctgctctgctgcgggat---cacgggctggcccatggcgatgccctggttctgc 362 |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| Sbjct: 827 tcgctgctctgctgcgggatgatcacgggctggcccatcgcgatgcactggttctgc 771
>gb|AC154827.3| Mus musculus BAC clone RP24-546P18 from chromosome 14, complete sequence Length = 168432 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 43 aatgtcaaacaaagaaaaagaa 64 |||||||||||||||||||||| Sbjct: 32313 aatgtcaaacaaagaaaaagaa 32292
>emb|CT025681.8| Mouse DNA sequence from clone RP24-325P17 on chromosome 14, complete sequence Length = 205581 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 43 aatgtcaaacaaagaaaaagaa 64 |||||||||||||||||||||| Sbjct: 152289 aatgtcaaacaaagaaaaagaa 152310
>gb|AC160652.2| Pan troglodytes BAC clone CH251-490H15 from chromosome 6, complete sequence Length = 169342 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 aaagaaaaagaaagactgaac 73 ||||||||||||||||||||| Sbjct: 34912 aaagaaaaagaaagactgaac 34892
>gb|AC122169.24| Medicago truncatula clone mth2-9m5, complete sequence Length = 125652 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 cagccaacatatagcgttcat 160 ||||||||||||||||||||| Sbjct: 73171 cagccaacatatagcgttcat 73191
>emb|AL365232.24| Human DNA sequence from clone RP11-257K9 on chromosome 6 Contains the 3' end of the KCNQ5 gene for potassium voltage-gated channel KQT-like subfamily member 5, a novel gene, a RNA-binding protein with multiple splicing (RBPMS) pseudogene and the 3' end of the C6orf148 gene for chromosome 6 open reading frame 148, complete sequence Length = 120846 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 aaagaaaaagaaagactgaac 73 ||||||||||||||||||||| Sbjct: 93949 aaagaaaaagaaagactgaac 93969
>emb|AL355611.11| Human DNA sequence from clone RP11-430K22 on chromosome 13 Contains a 60S ribosomal protein L12 (RPL12) pseudogene and a pseudogene similar to part of ribosomal protein S3A (RPS3A)(FTE1), complete sequence Length = 176939 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 aaagaaaaagaaagactgaac 73 ||||||||||||||||||||| Sbjct: 83378 aaagaaaaagaaagactgaac 83398
>gb|AC006528.5| Arabidopsis thaliana chromosome 2 clone F9B22 map mi398, complete sequence Length = 95765 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 aaacaaagaaaaagaaagact 69 ||||||||||||||||||||| Sbjct: 7894 aaacaaagaaaaagaaagact 7914
>gb|AC006218.4| Arabidopsis thaliana chromosome 2 clone F17L24 map GPC6, complete sequence Length = 90161 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 aaacaaagaaaaagaaagact 69 ||||||||||||||||||||| Sbjct: 6638 aaacaaagaaaaagaaagact 6618
>dbj|AK138637.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330084G14 product:Hypothetical ARM repeat structure containing protein homolog [Mus musculus], full insert sequence Length = 5463 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 tcaaacaaagaaaaagaaaga 67 ||||||||||||||||||||| Sbjct: 4227 tcaaacaaagaaaaagaaaga 4207
>gb|AC161823.4| Pan troglodytes BAC clone CH251-142M23 from chromosome unknown, complete sequence Length = 163179 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 53 aaagaaaaagaaagactgaac 73 ||||||||||||||||||||| Sbjct: 8444 aaagaaaaagaaagactgaac 8424
>dbj|AP002448.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-76P21, complete sequences Length = 177236 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 tcaaacaaagaaaaagaaaga 67 ||||||||||||||||||||| Sbjct: 79743 tcaaacaaagaaaaagaaaga 79723
>emb|AL807811.9| Mouse DNA sequence from clone RP23-247I1 on chromosome 4, complete sequence Length = 249021 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 tcaaacaaagaaaaagaaaga 67 ||||||||||||||||||||| Sbjct: 245782 tcaaacaaagaaaaagaaaga 245762
>emb|AL683839.9| Mouse DNA sequence from clone RP23-183N16 on chromosome 2, complete sequence Length = 233086 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 48 caaacaaagaaaaagaaagactgaa 72 |||||||| |||||||||||||||| Sbjct: 166933 caaacaaacaaaaagaaagactgaa 166957
>gb|AC146891.3| Dasypus novemcinctus clone VMRC5-364E4, complete sequence Length = 133673 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 aaagaaaaagaaagactgaa 72 |||||||||||||||||||| Sbjct: 114034 aaagaaaaagaaagactgaa 114053
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 cacgggctggcccatggcgatgcc 352 ||||||||||||||||||| |||| Sbjct: 1477774 cacgggctggcccatggcggtgcc 1477797
>ref|XM_653290.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0778.2), mRNA Length = 921 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ttctgctgcggcccccagct 376 |||||||||||||||||||| Sbjct: 618 ttctgctgcggcccccagct 637
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 aaataataatagcaaccaaactgc 103 |||||||||| ||||||||||||| Sbjct: 534464 aaataataatcgcaaccaaactgc 534441
>emb|CR956376.4| Pig DNA sequence from clone CH242-7P5 on chromosome 17, complete sequence Length = 152567 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 tgctgcggcccccagcttggtggg 383 ||||| |||||||||||||||||| Sbjct: 72039 tgctggggcccccagcttggtggg 72016
>gb|AC124607.4| Mus musculus BAC clone RP23-84H10 from chromosome 12, complete sequence Length = 168842 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaacaaagaaaaagaaagac 68 |||||||||||||||||||| Sbjct: 30387 aaacaaagaaaaagaaagac 30406
>gb|AC124349.4| Mus musculus BAC clone RP24-463G19 from chromosome 12, complete sequence Length = 122944 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaacaaagaaaaagaaagac 68 |||||||||||||||||||| Sbjct: 121042 aaacaaagaaaaagaaagac 121061
>ref|XM_812156.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507031.40) partial mRNA Length = 2124 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 tgggaattgctgccggttgt 282 |||||||||||||||||||| Sbjct: 1162 tgggaattgctgccggttgt 1143
>emb|AL032677.1|CECTEL5 Caenorhabditis elegans Plasmid cTel5, complete sequence Length = 932 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 gtcaaacaaagaaaaagaaa 65 |||||||||||||||||||| Sbjct: 193 gtcaaacaaagaaaaagaaa 212
>emb|Z81568.1|CEK08E3 Caenorhabditis elegans Cosmid K08E3, complete sequence Length = 39565 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 gtcaaacaaagaaaaagaaa 65 |||||||||||||||||||| Sbjct: 37144 gtcaaacaaagaaaaagaaa 37163
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 45 tgtcaaacaaagaaaaagaaagactgaa 72 ||||||||||||||||||| ||| |||| Sbjct: 51395 tgtcaaacaaagaaaaagagagaatgaa 51422
>gb|AC133341.11| Medicago truncatula clone mth2-28i3, complete sequence Length = 138850 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 45 tgtcaaacaaagaaaaagaaagactgaa 72 ||||||||||||||||||| ||| |||| Sbjct: 45434 tgtcaaacaaagaaaaagagagaatgaa 45461
>gb|AC132859.11| Mus musculus chromosome 1, clone RP24-389O14, complete sequence Length = 128305 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 aaacaaagaaaaagaaagac 68 |||||||||||||||||||| Sbjct: 64267 aaacaaagaaaaagaaagac 64248
>emb|Z98043.1|HS332O11 Human DNA sequence from clone RP3-332O11 on chromosome 1q24-25 Contains a novel pseudogene, complete sequence Length = 95930 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 aaacaaagaaaaagaaagac 68 |||||||||||||||||||| Sbjct: 40381 aaacaaagaaaaagaaagac 40362
>emb|AL713998.7| Human DNA sequence from clone RP11-301G19 on chromosome 6, complete sequence Length = 184887 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 aaagaaaaagaaagactgaa 72 |||||||||||||||||||| Sbjct: 131105 aaagaaaaagaaagactgaa 131124
>emb|AL592296.16| Human DNA sequence from clone RP11-792P23 on chromosome 10 Contains a novel pseudogene and the 3' end of a novel gene (MGC46732), complete sequence Length = 77088 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aatgtcaaacaaagaaaaagaaag 66 |||||||| ||||||||||||||| Sbjct: 62316 aatgtcaagcaaagaaaaagaaag 62339
>emb|AL365274.17| Human DNA sequence from clone RP11-298A17 on chromosome 9 Contains the DAB2IP gene for DAB2 interacting protein (AF9Q34, DIP1/2, KIAA1743) and four CpG islands, complete sequence Length = 171941 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 atggcgatgccctggttctg 361 |||||||||||||||||||| Sbjct: 10897 atggcgatgccctggttctg 10916
>gb|AC113426.2| Homo sapiens chromosome 5 clone RP11-718N2, complete sequence Length = 179627 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 taaataataatagcaaccaa 98 |||||||||||||||||||| Sbjct: 113360 taaataataatagcaaccaa 113341
>emb|AL355344.20| Human DNA sequence from clone RP11-710A11 on chromosome 10 Contains the 3' end for a novel gene (KIAA1274), the PRF1 gene forperforin 1 (pore forming protein), the 5' end of the ADAMTS14 gene for a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif 14, and one CpG island, complete sequence Length = 149490 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 aaagaaaaagaaagactgaa 72 |||||||||||||||||||| Sbjct: 84589 aaagaaaaagaaagactgaa 84570
>emb|AL353812.13| Human DNA sequence from clone RP11-384D7 on chromosome 20 Contains the 5' end of the C20orf22 for chromosome 20 open reading frame 22 (DKFZp434P106), the PPIAP2 gene for peptidylprolyl isomerase A (cyclophilin A) pseudogene 2, the 5' end of the gene for a novel protein (KIAA0186) and three CpG islands, complete sequence Length = 129794 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 aaagaaaaagaaagactgaa 72 |||||||||||||||||||| Sbjct: 123907 aaagaaaaagaaagactgaa 123888
>emb|AL139423.25| Human DNA sequence from clone RP4-734G22 on chromosome 1 Contains the 3' end of the PEX14 gene for peroxisomal biogenesis factor 14, the 3' end of the gene for a novel protein (FLJ34970, FLJ20321, FLJ12223) and two CpG islands, complete sequence Length = 143285 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 tggttctgctgcggcccccagctt 377 ||||||||||| |||||||||||| Sbjct: 26476 tggttctgctgtggcccccagctt 26499
>gb|AE014214.1| Streptococcus agalactiae 2603V/R section 24 of 100 of the complete genome Length = 20166 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 aaataataatagcaaccaaactgc 103 |||||||||| ||||||||||||| Sbjct: 6051 aaataataatcgcaaccaaactgc 6028
>gb|AC103688.4| Homo sapiens chromosome 8, clone CTD-3046C4, complete sequence Length = 211222 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 662 aactgtgtttataatagctt 681 |||||||||||||||||||| Sbjct: 67050 aactgtgtttataatagctt 67031
>emb|AL766845.1|SAG766845 Streptococcus agalactiae NEM316 complete genome, segment 3 Length = 178050 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 aaataataatagcaaccaaactgc 103 |||||||||| ||||||||||||| Sbjct: 175432 aaataataatcgcaaccaaactgc 175409
>emb|CR937047.1|RN510H6 Rattus norvegicus chromosome 5 BAC CH230-510H6, complete sequence Length = 188516 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 atagcaaccaaactgctatc 107 |||||||||||||||||||| Sbjct: 177178 atagcaaccaaactgctatc 177159
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ggcccatggcgatgccctgg 356 |||||||||||||||||||| Sbjct: 1484565 ggcccatggcgatgccctgg 1484584
>gb|AC010650.9| Homo sapiens chromosome 16 clone RP11-281J9, complete sequence Length = 172334 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 caaacaaagaaaaagaaagactga 71 |||||||||||||||||| ||||| Sbjct: 160816 caaacaaagaaaaagaaaaactga 160793
>gb|AC087636.5| Homo sapiens chromosome 15, clone RP11-469K5, complete sequence Length = 143410 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 aaacaaagaaaaagaaagac 68 |||||||||||||||||||| Sbjct: 13588 aaacaaagaaaaagaaagac 13569
>gb|AC087633.5| Homo sapiens chromosome 15, clone RP11-255M2, complete sequence Length = 179163 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 aaacaaagaaaaagaaagac 68 |||||||||||||||||||| Sbjct: 170388 aaacaaagaaaaagaaagac 170369
>gb|AF404344.1|AF404344 Infectious salmon anemia virus segment 4 putative PA protein (P2) gene, complete cds Length = 1787 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 aacaaagaaaaagaaagact 69 |||||||||||||||||||| Sbjct: 324 aacaaagaaaaagaaagact 343
>gb|AF306548.1|AF306548 Infectious salmon anemia virus putative polymerase mRNA, complete cds Length = 1805 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 aacaaagaaaaagaaagact 69 |||||||||||||||||||| Sbjct: 343 aacaaagaaaaagaaagact 362
>dbj|AK038636.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230052A02 product:cytochrome P450, family 2, subfamily j, polypeptide 6, full insert sequence Length = 3774 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 aaagaaaaagaaagactgaa 72 |||||||||||||||||||| Sbjct: 1235 aaagaaaaagaaagactgaa 1216
>gb|AC095043.3| Homo sapiens BAC clone RP11-124A7 from 4, complete sequence Length = 178037 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 aatgtcaaacaaagaaaaag 62 |||||||||||||||||||| Sbjct: 107018 aatgtcaaacaaagaaaaag 107037
>gb|AC092134.4| Homo sapiens chromosome 16 clone RP11-264M12, complete sequence Length = 159925 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 caaacaaagaaaaagaaagactga 71 |||||||||||||||||| ||||| Sbjct: 2210 caaacaaagaaaaagaaaaactga 2187
>gb|AC124857.2| Homo sapiens chromosome 5 clone RP11-703G5, complete sequence Length = 131747 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 taaataataatagcaaccaa 98 |||||||||||||||||||| Sbjct: 27423 taaataataatagcaaccaa 27442
>emb|BX119993.9| Mouse DNA sequence from clone RP23-13I18 on chromosome X, complete sequence Length = 234697 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 caaacaaagaaaaagaaaga 67 |||||||||||||||||||| Sbjct: 25081 caaacaaagaaaaagaaaga 25062
>dbj|AK108498.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-H01, full insert sequence Length = 1528 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 caccggctcgctgctctgct 321 |||||||||||||||||||| Sbjct: 1439 caccggctcgctgctctgct 1420
>emb|BX664607.21| Zebrafish DNA sequence from clone CH211-132B12 in linkage group 18, complete sequence Length = 179328 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 605 tacactccagttagtgtctg 624 |||||||||||||||||||| Sbjct: 23564 tacactccagttagtgtctg 23583
>gb|AC145363.4| Dasypus novemcinctus clone VMRC5-356N21, complete sequence Length = 108046 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 aaagaaaaagaaagactgaa 72 |||||||||||||||||||| Sbjct: 10108 aaagaaaaagaaagactgaa 10127
>emb|AL683816.6| Mouse DNA sequence from clone RP23-120E8 on chromosome 4, complete sequence Length = 216639 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 aaagaaaaagaaagactgaa 72 |||||||||||||||||||| Sbjct: 43333 aaagaaaaagaaagactgaa 43352
>emb|AL807771.6| Mouse DNA sequence from clone RP23-141C15 on chromosome 4, complete sequence Length = 233077 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 caaacaaagaaaaagaaaga 67 |||||||||||||||||||| Sbjct: 62442 caaacaaagaaaaagaaaga 62423 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,230,412 Number of Sequences: 3902068 Number of extensions: 6230412 Number of successful extensions: 153723 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 153425 Number of HSP's gapped (non-prelim): 290 length of query: 686 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 663 effective length of database: 17,143,297,704 effective search space: 11366006377752 effective search space used: 11366006377752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)