>ATPJ_YEAST (P81449) ATP synthase e chain, mitochondrial (EC 3.6.3.14)|
           (Translocase of the inner membrane protein 11)
          Length = 95

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 207 NYTRREKQVSYQHPYPLVIQLNKLSSSLSCFLPDEDAPPHGSLNLKPPN 353
           N  ++E+Q  Y+    LV +  K  + L   +  +D P + S NL+ PN
Sbjct: 28  NAKKKEEQAQYEEKLKLVEEAKKEYAKLHPVVTPKDVPANASFNLEDPN 76

>DMRT1_CHICK (Q9PTQ7) Doublesex- and mab-3-related transcription factor 1|
           (Fragment)
          Length = 311

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +3

Query: 219 REKQVSYQHPYPLVIQ----LNKLSSSLSCFLPDEDAPPHGS 332
           +E+++   HP PL       + K SSS SC L D  +P H +
Sbjct: 64  QEEELGISHPVPLPSAPEPVVKKSSSSSSCLLQDSSSPAHST 105

>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22|
          Length = 881

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +2

Query: 236 LPTSVSPSHPAQQAELFSQLLSS*RRCPTAWQP*S*ATQQQPYRMREHDHPRS*SPVQEK 415
           LP    P+ PA+ AE  S+ +SS   C T        T     R R + + R  SP + +
Sbjct: 623 LPKPTVPALPARDAESDSESVSSHSTCST-------CTGSSRSRSRSYSYSR--SPSRSR 673

Query: 416 GRRES 430
           GRR S
Sbjct: 674 GRRRS 678


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,119,750
Number of Sequences: 219361
Number of extensions: 1411079
Number of successful extensions: 2907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2907
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)