>Y1776_AQUAE (O67652) Hypothetical protein aq_1776|
          Length = 236

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 138 NDHITDRYYKQTTSHGRAATTDVAQHNKHPTLIASLRGTLPSLPSTKIHATNED 299
           N+H  D+Y+  T+   R    D  + N    ++A      P +P TKI A  ED
Sbjct: 116 NNHNGDKYFVVTSKIRRYNKNDKNEVNVEKIVLACTASIKPIMPDTKIVARGED 169

>SYG_CHLTR (Q46371) Glycyl-tRNA synthetase (EC 6.1.1.14) (GlyRS) [Includes:|
           Glycyl-tRNA synthetase alpha chain (Glycine--tRNA ligase
           alpha chain); Glycyl-tRNA synthetase beta chain
           (Glycine--tRNA ligase beta chain)]
          Length = 1003

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 147 ITDRYYKQTTSHGRAATTDVAQHNKHPTLIASLRGT 254
           I  RYY Q  S  RAA   + +H +H TL +S+  T
Sbjct: 727 IMGRYYLQNASLSRAAALAIGEHLQHITLGSSISTT 762

>RPIA_PASMU (P57961) Ribose-5-phosphate isomerase A (EC 5.3.1.6)|
           (Phosphoriboisomerase A) (PRI)
          Length = 219

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = -1

Query: 361 SQGRLALL*HQDTRILSRQHASSLVAWIFVDGREGNVPRREAIRVGCLLCCATSVVAALP 182
           S+   ALL  Q   + S    SSL   I+VDG +   P++  I+ G        +VAAL 
Sbjct: 53  SKASEALLAKQGIEVFSANEVSSLD--IYVDGADEINPQKMMIKGGGAALTREKIVAALA 110

Query: 181 *EVVCL 164
            + +C+
Sbjct: 111 KKFICI 116

>IRF4_HUMAN (Q15306) Interferon regulatory factor 4 (IRF-4)|
           (Lymphocyte-specific interferon regulatory factor)
           (LSIRF) (NF-EM5) (Multiple myeloma oncogene 1)
          Length = 451

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
 Frame = +1

Query: 169 KQLLMAEPLQQMSHNTTSTRP*SLLSEEHY------PLSHPQRSMQPTKMHAAVREYECP 330
           KQL + +P   MSH  T T P   L  +        PL    R   P + H  +  Y+CP
Sbjct: 137 KQLTLEDPQMSMSHPYTMTTPYPSLPAQQVHNYMMPPLDRSWRDYVPDQPHPEI-PYQCP 195

>YLX8_CAEEL (P46504) Hypothetical protein F23F12.8 precursor|
          Length = 980

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 310 VREYECPDATTKLIALVIYVILPDWSTNVPTWSP 411
           + EY  PD  + +I        P+W+T  PTW+P
Sbjct: 636 ISEYRPPDVESHMIRFTTQS--PEWATPSPTWNP 667

>UVRB_RHOBA (Q7UFR2) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 708

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = -2

Query: 318 FSHGSMHLRWLHGSLWMGERVMFLGEKRLGSGACCVVRHLL 196
           F    +  RWLH  L   ERV  L E R G   C V  +LL
Sbjct: 471 FQEQGVKCRWLHSELNAFERVDLLQELRAGQFDCLVGVNLL 511

>AROB_STAAR (Q6GGU4) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 354

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 162 YKQTTSHGRAATTDVAQHNKHPTLIASLRG 251
           YK    +G +AT D+ QH K   ++ SL+G
Sbjct: 180 YKHALLNGESATQDIEQHFKDREILQSLKG 209

>NUOG_PSEAE (Q9I0J6) NADH-quinone oxidoreductase chain 3 (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain G) (NDH-1, chain G)
          Length = 905

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 189 AATTDVAQHNKHPTLIASLRGT-LPSLPSTKIHATNED 299
           AA  ++AQH ++P  IAS+  T L  +    +HA  +D
Sbjct: 413 AAVKNIAQHAQNPLFIASVSATRLDDVAEETVHAAPDD 450

>FANCA_HUMAN (O15360) Fanconi anemia group A protein (Protein FACA)|
          Length = 1455

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +3

Query: 144  HITDRYYKQTTSHGRAATTDVAQHNKHPTLIASLRGTLPSLPSTKIHATNEDAC 305
            H+ +   +   SHG A T D+  H     L A LR   PSL    I A  +  C
Sbjct: 1110 HLVNSEMRNFCSHGGALTQDITAHFFRGLLNACLRSRDPSLMVDFILAKCQTKC 1163

>AROB_STAAC (Q5HFV8) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 354

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 162 YKQTTSHGRAATTDVAQHNKHPTLIASLRG 251
           YK    +G +AT D+ QH K   ++ SL G
Sbjct: 180 YKHALLNGESATQDIEQHFKDREILQSLNG 209

>AROB_STAAB (Q2YY89) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 354

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 162 YKQTTSHGRAATTDVAQHNKHPTLIASLRG 251
           YK    +G +AT D+ QH K   ++ SL G
Sbjct: 180 YKHALLNGESATQDIEQHFKDREILQSLNG 209


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,526,449
Number of Sequences: 219361
Number of extensions: 1092066
Number of successful extensions: 3528
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3528
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)