ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19n16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY074784.1| Triticum aestivum dehydroascorbate reductase (DHAR) mRNA, complete cds Length = 956 Score = 452 bits (228), Expect = e-124 Identities = 297/320 (92%) Strand = Plus / Minus Query: 299 ggcgggggagcttacgggttcaccttcggcgcccacccggcgatcaggttctccttggtc 358 |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 724 ggcgggagggcttacgggttcactttcggcgcccacccggcgatcaggttctccttggtc 665 Query: 359 ggcttggtcttgacgaacgactcgcggctgaagagagcctcggtgtaggcatggacgctg 418 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 664 gccttggtcttgacgaacgactcgcggctgaagagagcctcggtgtaggcatggacgctg 605 Query: 419 gtcagtgtttcagggaccttccagcctttgaagtgctccagggcaacctggaggtggaag 478 ||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||| || Sbjct: 604 gtcagggtttcagggaccttccagcccttgaagtgctccagggcgacctggagatggtag 545 Query: 479 agcttcggagccaagctgagatccgcggcggagacattcgccccgttgatatagggtcca 538 ||||||||||||| ||||||||| | ||||||| |||||||| ||||| ||||||||| Sbjct: 544 agcttcggagccaggctgagatcgacagcggagatgttcgccccattgatgtagggtcca 485 Query: 539 tgggcctttaggtgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagcca 598 |||||||| ||||||||||| || ||||||||||| |||||||||||||||||||| ||| Sbjct: 484 tgggccttcaggtgctcttcgagcgcctgcagctcatcaacaagtgccttctccgaacca 425 Query: 599 tcgctggcgtccttgctctt 618 |||||||| ||||||||||| Sbjct: 424 tcgctggcatccttgctctt 405 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 189 aggctcgctcgcattattccaa 210 |||||||||||||||||||||| Sbjct: 806 aggctcgctcgcattattccaa 785
>emb|AJ622892.1| Triticum durum partial mRNA for DRP5 protein (drg5 gene) Length = 478 Score = 278 bits (140), Expect = 2e-71 Identities = 185/200 (92%) Strand = Plus / Plus Query: 419 gtcagtgtttcagggaccttccagcctttgaagtgctccagggcaacctggaggtggaag 478 ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| || Sbjct: 1 gtcagggtttcagggaccttccagcccttgaagtgctccagggcgacctggaggtggtag 60 Query: 479 agcttcggagccaagctgagatccgcggcggagacattcgccccgttgatatagggtcca 538 ||||||||||||| ||||||||| ||||||||| |||||||||||||| ||||||||| Sbjct: 61 agcttcggagccaggctgagatcgacggcggagatgttcgccccgttgatgtagggtcca 120 Query: 539 tgggcctttaggtgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagcca 598 |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct: 121 tgggccttcaggtgctcttcgagtgcctgcagctcgtcaacaagtgccttttccgaacca 180 Query: 599 tcgctggcgtccttgctctt 618 |||||||| ||||||||||| Sbjct: 181 tcgctggcatccttgctctt 200
>gb|DQ090998.1| Puccinellia tenuiflora dehydroascorbate reductase protein mRNA, partial cds Length = 202 Score = 238 bits (120), Expect = 2e-59 Identities = 162/176 (92%) Strand = Plus / Minus Query: 308 gcttacgggttcaccttcggcgcccacccggcgatcaggttctccttggtcggcttggtc 367 |||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 200 gcttacgggttcactttgggcgcccatccggcgatcaggttctccttggtgggcttggtc 141 Query: 368 ttgacgaacgactcgcggctgaagagagcctcggtgtaggcatggacgctggtcagtgtt 427 |||||||| || || |||||||| ||||||| |||||||||||||||||||||||| ||| Sbjct: 140 ttgacgaaggattcccggctgaacagagccttggtgtaggcatggacgctggtcagggtt 81 Query: 428 tcagggaccttccagcctttgaagtgctccagggcaacctggaggtggaagagctt 483 || ||||||||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct: 80 tcggggaccttccatcctttgaaatgctccagggcaacctggagatggaagagctt 25
>gb|DQ093638.1| Eustoma grandiflorum dehydroascorbate reductase protein mRNA, partial cds Length = 195 Score = 236 bits (119), Expect = 7e-59 Identities = 158/171 (92%) Strand = Plus / Minus Query: 313 cgggttcaccttcggcgcccacccggcgatcaggttctccttggtcggcttggtcttgac 372 ||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 195 cgggttcactttgggcgcccatccggcgatcaggttctccttggtgggcttggtcttgac 136 Query: 373 gaacgactcgcggctgaagagagcctcggtgtaggcatggacgctggtcagtgtttcagg 432 ||| || || |||||||| ||||||| |||||||||||||||||||||||| |||||||| Sbjct: 135 gaaggattcccggctgaacagagccttggtgtaggcatggacgctggtcagggtttcagg 76 Query: 433 gaccttccagcctttgaagtgctccagggcaacctggaggtggaagagctt 483 ||||||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct: 75 gaccttccatcctttgaaatgctccagggcaacctggagatggaagagctt 25
>gb|AY106435.1| Zea mays PCO106999 mRNA sequence Length = 1141 Score = 131 bits (66), Expect = 3e-27 Identities = 243/302 (80%) Strand = Plus / Minus Query: 317 ttcaccttcggcgcccacccggcgatcaggttctccttggtcggcttggtcttgacgaac 376 |||||||| |||||||| || || |||| || ||||| || ||||| |||||||| || Sbjct: 728 ttcaccttgggcgcccatcccgcaatcacgtgctcctcggatggcttagtcttgacaaaa 669 Query: 377 gactcgcggctgaagagagcctcggtgtaggcatggacgctggtcagtgtttcagggacc 436 || || |||||||| ||||||| ||||||||| |||||| |||| || |||| |||| | Sbjct: 668 gattcacggctgaaaagagccttggtgtaggcgtggacgttggttaggttttctgggatc 609 Query: 437 ttccagcctttgaagtgctccagggcaacctggaggtggaagagcttcggagccaagctg 496 |||||||||||||| |||||||| || | ||| |||||||| ||||| || ||| ||| Sbjct: 608 ttccagcctttgaaatgctccagtgcgatctgtaggtggaaaagctttggccccaggcta 549 Query: 497 agatccgcggcggagacattcgccccgttgatatagggtccatgggcctttaggtgctct 556 ||||| || || || || ||| |||| || || ||||| ||||| || || || || || Sbjct: 548 agatcagctgctgacacgttctccccatttatgtaggggccatgagctttgagatgatca 489 Query: 557 tccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtccttgctc 616 ||||||||||||||||| || | ||| |||||||| || ||||| || || ||||||||| Sbjct: 488 tccagtgcctgcagctcatccagaagcgccttctctgacccatcactagcatccttgctc 429 Query: 617 tt 618 || Sbjct: 428 tt 427
>gb|AY074786.1| Oryza sativa dehydroascorbate reductase (DHAR) mRNA, complete cds Length = 1067 Score = 87.7 bits (44), Expect = 4e-14 Identities = 188/236 (79%) Strand = Plus / Minus Query: 365 gtcttgacgaacgactcgcggctgaagagagcctcggtgtaggcatggacgctggtcagt 424 ||||||| ||| || |||||||| || |||||||| ||||| ||||| || |||| || Sbjct: 666 gtcttgatgaaagattcgcggctaaacagagcctctgtgtaagcatgaacattggttagg 607 Query: 425 gtttcagggaccttccagcctttgaagtgctccagggcaacctggaggtggaagagcttc 484 ||| |||| ||||||||||||||| |||||||| ||||||||||| ||| ||||||| Sbjct: 606 tcttccgggatcttccagcctttgaaatgctccagagcaacctggagatggtagagcttt 547 Query: 485 ggagccaagctgagatccgcggcggagacattcgccccgttgatatagggtccatgggcc 544 || |||| ||| || || || || || | ||| |||||||||| |||| ||||| || Sbjct: 546 ggtgccaggctaaggtcagcagctgaaatgttctgcccgttgataaaggggccatgagct 487 Query: 545 tttaggtgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatc 600 || || ||||| || ||||||||||| || || |||||||||||| || ||||| Sbjct: 486 ttcagatgctcctcgagtgcctgcagttcagtaagaagtgccttctctgaaccatc 431
>dbj|AK070895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074C02, full insert sequence Length = 1198 Score = 87.7 bits (44), Expect = 4e-14 Identities = 188/236 (79%) Strand = Plus / Minus Query: 365 gtcttgacgaacgactcgcggctgaagagagcctcggtgtaggcatggacgctggtcagt 424 ||||||| ||| || |||||||| || |||||||| ||||| ||||| || |||| || Sbjct: 667 gtcttgatgaaagattcgcggctaaacagagcctctgtgtaagcatgaacattggttagg 608 Query: 425 gtttcagggaccttccagcctttgaagtgctccagggcaacctggaggtggaagagcttc 484 ||| |||| ||||||||||||||| |||||||| ||||||||||| ||| ||||||| Sbjct: 607 tcttccgggatcttccagcctttgaaatgctccagagcaacctggagatggtagagcttt 548 Query: 485 ggagccaagctgagatccgcggcggagacattcgccccgttgatatagggtccatgggcc 544 || |||| ||| || || || || || | ||| |||||||||| |||| ||||| || Sbjct: 547 ggtgccaggctaaggtcagcagctgaaatgttctgcccgttgataaaggggccatgagct 488 Query: 545 tttaggtgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatc 600 || || ||||| || ||||||||||| || || |||||||||||| || ||||| Sbjct: 487 ttcagatgctcctcgagtgcctgcagttcagtaagaagtgccttctctgaaccatc 432
>dbj|AK061836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D08, full insert sequence Length = 1053 Score = 87.7 bits (44), Expect = 4e-14 Identities = 188/236 (79%) Strand = Plus / Minus Query: 365 gtcttgacgaacgactcgcggctgaagagagcctcggtgtaggcatggacgctggtcagt 424 ||||||| ||| || |||||||| || |||||||| ||||| ||||| || |||| || Sbjct: 671 gtcttgatgaaagattcgcggctaaacagagcctctgtgtaagcatgaacattggttagg 612 Query: 425 gtttcagggaccttccagcctttgaagtgctccagggcaacctggaggtggaagagcttc 484 ||| |||| ||||||||||||||| |||||||| ||||||||||| ||| ||||||| Sbjct: 611 tcttccgggatcttccagcctttgaaatgctccagagcaacctggagatggtagagcttt 552 Query: 485 ggagccaagctgagatccgcggcggagacattcgccccgttgatatagggtccatgggcc 544 || |||| ||| || || || || || | ||| |||||||||| |||| ||||| || Sbjct: 551 ggtgccaggctaaggtcagcagctgaaatgttctgcccgttgataaaggggccatgagct 492 Query: 545 tttaggtgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatc 600 || || ||||| || ||||||||||| || || |||||||||||| || ||||| Sbjct: 491 ttcagatgctcctcgagtgcctgcagttcagtaagaagtgccttctctgaaccatc 436
>dbj|AB037970.1| Oryza sativa (japonica cultivar-group) DHAR1 mRNA for GSH-dependent dehydroascorbate reductase 1, complete cds Length = 1044 Score = 87.7 bits (44), Expect = 4e-14 Identities = 188/236 (79%) Strand = Plus / Minus Query: 365 gtcttgacgaacgactcgcggctgaagagagcctcggtgtaggcatggacgctggtcagt 424 ||||||| ||| || |||||||| || |||||||| ||||| ||||| || |||| || Sbjct: 636 gtcttgatgaaagattcgcggctaaacagagcctctgtgtaagcatgaacattggttagg 577 Query: 425 gtttcagggaccttccagcctttgaagtgctccagggcaacctggaggtggaagagcttc 484 ||| |||| ||||||||||||||| |||||||| ||||||||||| ||| ||||||| Sbjct: 576 tcttccgggatcttccagcctttgaaatgctccagagcaacctggagatggtagagcttt 517 Query: 485 ggagccaagctgagatccgcggcggagacattcgccccgttgatatagggtccatgggcc 544 || |||| ||| || || || || || | ||| |||||||||| |||| ||||| || Sbjct: 516 ggtgccaggctaaggtcagcagctgaaatgttctgcccgttgataaaggggccatgagct 457 Query: 545 tttaggtgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatc 600 || || ||||| || ||||||||||| || || |||||||||||| || ||||| Sbjct: 456 ttcagatgctcctcgagtgcctgcagttcagtaagaagtgccttctctgaaccatc 401
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07, complete sequence Length = 164477 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 431 gggaccttccagcctttgaagtgctccagggcaacctggaggtggaagagctt 483 |||| ||||||||||||||| |||||||| ||||||||||| ||| ||||||| Sbjct: 50721 gggatcttccagcctttgaaatgctccagagcaacctggagatggtagagctt 50773
>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10, complete sequence Length = 140282 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 431 gggaccttccagcctttgaagtgctccagggcaacctggaggtggaagagctt 483 |||| ||||||||||||||| |||||||| ||||||||||| ||| ||||||| Sbjct: 118740 gggatcttccagcctttgaaatgctccagagcaacctggagatggtagagctt 118792
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 431 gggaccttccagcctttgaagtgctccagggcaacctggaggtggaagagctt 483 |||| ||||||||||||||| |||||||| ||||||||||| ||| ||||||| Sbjct: 846298 gggatcttccagcctttgaaatgctccagagcaacctggagatggtagagctt 846350
>gb|DQ430382.1| Sorghum propinquum locus pSB1945 genomic sequence Length = 610 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 597 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 538 Query: 611 ttgctctt 618 |||||||| Sbjct: 537 ttgctctt 530
>gb|DQ430381.1| Sorghum bicolor voucher PI585454 locus pSB1945 genomic sequence Length = 618 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 605 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 546 Query: 611 ttgctctt 618 |||||||| Sbjct: 545 ttgctctt 538
>gb|DQ430380.1| Sorghum bicolor voucher PI267539 locus pSB1945 genomic sequence Length = 798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 785 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 726 Query: 611 ttgctctt 618 |||||||| Sbjct: 725 ttgctctt 718
>gb|DQ430379.1| Sorghum bicolor voucher PI267408 locus pSB1945 genomic sequence Length = 609 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 596 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 537 Query: 611 ttgctctt 618 |||||||| Sbjct: 536 ttgctctt 529
>gb|DQ430378.1| Sorghum bicolor voucher PI221607 locus pSB1945 genomic sequence Length = 798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 785 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 726 Query: 611 ttgctctt 618 |||||||| Sbjct: 725 ttgctctt 718
>gb|DQ430377.1| Sorghum bicolor voucher PI152702 locus pSB1945 genomic sequence Length = 798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 785 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 726 Query: 611 ttgctctt 618 |||||||| Sbjct: 725 ttgctctt 718
>gb|DQ430376.1| Sorghum bicolor voucher NSL92371 locus pSB1945 genomic sequence Length = 798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 785 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 726 Query: 611 ttgctctt 618 |||||||| Sbjct: 725 ttgctctt 718
>gb|DQ430375.1| Sorghum bicolor voucher NSL87902 locus pSB1945 genomic sequence Length = 798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 785 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 726 Query: 611 ttgctctt 618 |||||||| Sbjct: 725 ttgctctt 718
>gb|DQ430374.1| Sorghum bicolor voucher NSL87666 locus pSB1945 genomic sequence Length = 798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 785 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 726 Query: 611 ttgctctt 618 |||||||| Sbjct: 725 ttgctctt 718
>gb|DQ430373.1| Sorghum bicolor voucher NSL77217 locus pSB1945 genomic sequence Length = 798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 785 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 726 Query: 611 ttgctctt 618 |||||||| Sbjct: 725 ttgctctt 718
>gb|DQ430372.1| Sorghum bicolor voucher NSL77034 locus pSB1945 genomic sequence Length = 798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 785 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 726 Query: 611 ttgctctt 618 |||||||| Sbjct: 725 ttgctctt 718
>gb|DQ430371.1| Sorghum bicolor voucher NSL56174 locus pSB1945 genomic sequence Length = 798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 785 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 726 Query: 611 ttgctctt 618 |||||||| Sbjct: 725 ttgctctt 718
>gb|DQ430370.1| Sorghum bicolor voucher NSL56003 locus pSB1945 genomic sequence Length = 798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 785 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 726 Query: 611 ttgctctt 618 |||||||| Sbjct: 725 ttgctctt 718
>gb|DQ430369.1| Sorghum bicolor voucher NSL55243 locus pSB1945 genomic sequence Length = 798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 785 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 726 Query: 611 ttgctctt 618 |||||||| Sbjct: 725 ttgctctt 718
>gb|DQ430368.1| Sorghum bicolor voucher NSL51365 locus pSB1945 genomic sequence Length = 798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 785 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 726 Query: 611 ttgctctt 618 |||||||| Sbjct: 725 ttgctctt 718
>gb|DQ430367.1| Sorghum bicolor voucher NSL51030 locus pSB1945 genomic sequence Length = 618 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 605 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 546 Query: 611 ttgctctt 618 |||||||| Sbjct: 545 ttgctctt 538
>gb|DQ430366.1| Sorghum bicolor voucher NSL50875 locus pSB1945 genomic sequence Length = 798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 785 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 726 Query: 611 ttgctctt 618 |||||||| Sbjct: 725 ttgctctt 718
>gb|DQ430365.1| Sorghum bicolor voucher BTx623 locus pSB1945 genomic sequence Length = 798 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 551 tgctcttccagtgcctgcagctcgtcaacaagtgccttctccgagccatcgctggcgtcc 610 ||||| ||||||||||||||||| || | ||| |||||||| || ||||| || || ||| Sbjct: 785 tgctcatccagtgcctgcagctcatccagaagcgccttctctgaaccatcactagcatcc 726 Query: 611 ttgctctt 618 |||||||| Sbjct: 725 ttgctctt 718
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 355 ggtcggcttggtcttgacgaacgact 380 ||||||| |||||||||||||||||| Sbjct: 1119794 ggtcggcctggtcttgacgaacgact 1119769
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 538 atgggcctttaggtgctcttccagt 562 |||||||||||||||||||| |||| Sbjct: 3943514 atgggcctttaggtgctcttgcagt 3943538
>gb|AC109221.32| Mus musculus chromosome 7, clone RP23-207N2, complete sequence Length = 195657 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 agccaggcagggggcagacag 143 ||||||||||||||||||||| Sbjct: 71257 agccaggcagggggcagacag 71277
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 312 acgggttcaccttcggcgccc 332 ||||||||||||||||||||| Sbjct: 209716 acgggttcaccttcggcgccc 209736
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 ccttggtcggcttggtcttg 370 |||||||||||||||||||| Sbjct: 505341 ccttggtcggcttggtcttg 505322
>gb|AC168056.3| Mus musculus BAC clone RP24-189B1 from chromosome 13, complete sequence Length = 179458 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 cctggaggtggaagagcttc 484 |||||||||||||||||||| Sbjct: 51516 cctggaggtggaagagcttc 51497
>ref|XM_366481.1| Magnaporthe grisea 70-15 chromosome VII predicted protein (MG02557.4) partial mRNA Length = 966 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cggcttggtcttgacgaacg 377 |||||||||||||||||||| Sbjct: 216 cggcttggtcttgacgaacg 197
>ref|XM_714685.1| Candida albicans SC5314 hypothetical protein (CaO19_14092), mRNA Length = 1569 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 tactactgccatcactactggcac 273 ||||||||||| |||||||||||| Sbjct: 1363 tactactgccagcactactggcac 1340
>ref|XM_714802.1| Candida albicans SC5314 hypothetical protein (CaO19_6800), mRNA Length = 1569 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 tactactgccatcactactggcac 273 ||||||||||| |||||||||||| Sbjct: 1363 tactactgccagcactactggcac 1340
>gb|AC144402.2| Atelerix albiventris clone LBNL4-89B6, complete sequence Length = 161430 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 caggcagagcacacagcaga 189 |||||||||||||||||||| Sbjct: 111810 caggcagagcacacagcaga 111829
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 cggcgatcaggttctccttg 355 |||||||||||||||||||| Sbjct: 3304928 cggcgatcaggttctccttg 3304947
>gb|AC063918.21| Homo sapiens 3 BAC RP11-49C18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 97001 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 tttcagggaccttccagcct 445 |||||||||||||||||||| Sbjct: 18007 tttcagggaccttccagcct 17988
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 gatcaggttctccttggtcg 359 |||||||||||||||||||| Sbjct: 3814314 gatcaggttctccttggtcg 3814295
>emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 in linkage group 2, complete sequence Length = 185178 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 ctcgcattattccaaaccca 215 |||||||||||||||||||| Sbjct: 28852 ctcgcattattccaaaccca 28833
>emb|Z84494.1|HSLUCA7 Human DNA sequence from clone XXcos-7 on chromosome 3, complete sequence Length = 16950 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 agccaggcagggggcagaca 142 |||||||||||||||||||| Sbjct: 12882 agccaggcagggggcagaca 12863
>emb|AL928663.4| Mouse DNA sequence from clone RP23-315A20 on chromosome 2, complete sequence Length = 94702 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 gaagtgctccagggcaacct 467 |||||||||||||||||||| Sbjct: 10457 gaagtgctccagggcaacct 10476 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,701,708 Number of Sequences: 3902068 Number of extensions: 3701708 Number of successful extensions: 70419 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70161 Number of HSP's gapped (non-prelim): 258 length of query: 618 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 595 effective length of database: 17,143,297,704 effective search space: 10200262133880 effective search space used: 10200262133880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
