No.
Definition
Score (bits)
E Value
1 ref|XM_468292.1| Oryza sativa (japonica cultivar-group), mRNA
192
8e-46
2 dbj|AK073740.1| Oryza sativa (japonica cultivar-group) cDNA clon...
192
8e-46
3 gb|BT017208.1| Zea mays clone EL01N0372A05.c mRNA sequence
127
4e-26
4 gb|AY105709.1| Zea mays PCO116780 mRNA sequence
119
1e-23
5 gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare str...
101
2e-18
6 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
101
2e-18
7 dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic D...
101
2e-18
8 dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic D...
101
2e-18
9 dbj|AK063891.1| Oryza sativa (japonica cultivar-group) cDNA clon...
88
3e-14
10 gb|AC015722.6| Homo sapiens chromosome 15, clone RP11-167B3, com...
42
1.8
11 gb|AC022523.7| Homo sapiens chromosome 15, clone RP11-183E24, co...
42
1.8
12 ref|XM_507878.1| PREDICTED: Pan troglodytes similar to DC-TM4F2 ...
40
7.3
13 gb|AC123948.4| Mus musculus BAC clone RP23-105C3 from chromosome...
40
7.3
14 gb|BC030149.2| Homo sapiens cDNA clone IMAGE:4842353, partial cds
40
7.3
15 gb|AC021028.12| Homo sapiens chromosome 10 clone RP11-137H2, com...
40
7.3
16 gb|BC047432.1| Homo sapiens cDNA clone IMAGE:5288883
40
7.3
17 gb|BC093016.1| Homo sapiens tetraspanin 14, mRNA (cDNA clone MGC...
40
7.3
18 gb|AF311903.1| Homo sapiens DC-TM4F2 precursor, mRNA, complete cds
40
7.3
19 emb|AL136638.1|HSM801611 Homo sapiens mRNA; cDNA DKFZp564B1037 (...
40
7.3
20 emb|CR620309.1| full-length cDNA clone CS0DL011YM05 of B cells (...
40
7.3
21 dbj|AK055641.1| Homo sapiens cDNA FLJ31079 fis, clone HSYRA2001595
40
7.3
22 ref|NM_030927.1| Homo sapiens tetraspanin 14 (TSPAN14), mRNA
40
7.3
23 gb|BC002920.2| Homo sapiens tetraspanin 14, mRNA (cDNA clone MGC...
40
7.3
24 gb|AC078778.34| Homo sapiens 12 BAC RP11-968A15 (Roswell Park Ca...
40
7.3
25 dbj|AP006138.1| Lotus japonicus genomic DNA, chromosome 1, clone...
40
7.3
26 emb|AL669901.26| Mouse DNA sequence from clone RP23-35N5 on chro...
40
7.3
>gb|AC069158.6 | Genomic Sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0049O12, from chromosome 2, complete sequence
Length = 155154
Score = 101 bits (51), Expect = 2e-18
Identities = 63/67 (94%)
Strand = Plus / Minus
Query: 473 caaaaatggtgcaaccatataaagcttcatcccattcactccacgagatattgcatcatc 532
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 106935 caaaaatggtgcgaccatatagagcttcatcccattcactccacgagatattgcgtcatc 106876
Query: 533 actagca 539
|| ||||
Sbjct: 106875 accagca 106869
Score = 73.8 bits (37), Expect = 5e-10
Identities = 73/85 (85%)
Strand = Plus / Minus
Query: 175 tgtcaggatcctaggtacgcagaaaggaagcatcaatggactgcagaatactggccgtat 234
||||||| ||||||||||| || |||||||| || ||||||||||| ||||| || || |
Sbjct: 107736 tgtcaggctcctaggtacgtaggaaggaagcttccatggactgcaggatactcgctgtgt 107677
Query: 235 cgaatctgaagcttctgaagctttt 259
|||| |||||| ||| |||||||||
Sbjct: 107676 cgaacctgaagtttcggaagctttt 107652
Score = 60.0 bits (30), Expect = 8e-06
Identities = 69/82 (84%)
Strand = Plus / Minus
Query: 323 gtcagatcctgctctagtaataacagggttctcgacaggcacaaagacacccgagggatt 382
||||||||||| |||||||||||| |||||||| |||||| | || |||| |||
Sbjct: 107624 gtcagatcctgttctagtaataacggggttctcaacaggcgccgctccagttgaggaatt 107565
Query: 383 cttcgctttccacacagtacct 404
||||||||||||||||||||||
Sbjct: 107564 cttcgctttccacacagtacct 107543
Score = 52.0 bits (26), Expect = 0.002
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 401 acctctagtagatgtgtctgacttctgatatactggggaccgatgtgtgcctatccatgc 460
|||||||| ||| |||||||| |||||||| |||| ||||||||| ||||||| ||
Sbjct: 107173 acctctagcagacgtgtctgatttctgatactgtgggtgacgatgtgtggctatccaggc 107114
Query: 461 ttttagaccc 470
||||||||||
Sbjct: 107113 ttttagaccc 107104
>dbj|AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 101 bits (51), Expect = 2e-18
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 473 caaaaatggtgcaaccatataaagcttcatcccattcactccacgagatattgcatcatc 532
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 34398171 caaaaatggtgcgaccatatagagcttcatcccattcactccacgagatattgcgtcatc 34398230
Query: 533 actagca 539
|| ||||
Sbjct: 34398231 accagca 34398237
Score = 73.8 bits (37), Expect = 5e-10
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 175 tgtcaggatcctaggtacgcagaaaggaagcatcaatggactgcagaatactggccgtat 234
||||||| ||||||||||| || |||||||| || ||||||||||| ||||| || || |
Sbjct: 34397370 tgtcaggctcctaggtacgtaggaaggaagcttccatggactgcaggatactcgctgtgt 34397429
Query: 235 cgaatctgaagcttctgaagctttt 259
|||| |||||| ||| |||||||||
Sbjct: 34397430 cgaacctgaagtttcggaagctttt 34397454
Score = 60.0 bits (30), Expect = 8e-06
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 323 gtcagatcctgctctagtaataacagggttctcgacaggcacaaagacacccgagggatt 382
||||||||||| |||||||||||| |||||||| |||||| | || |||| |||
Sbjct: 34397482 gtcagatcctgttctagtaataacggggttctcaacaggcgccgctccagttgaggaatt 34397541
Query: 383 cttcgctttccacacagtacct 404
||||||||||||||||||||||
Sbjct: 34397542 cttcgctttccacacagtacct 34397563
Score = 52.0 bits (26), Expect = 0.002
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 401 acctctagtagatgtgtctgacttctgatatactggggaccgatgtgtgcctatccatgc 460
|||||||| ||| |||||||| |||||||| |||| ||||||||| ||||||| ||
Sbjct: 34397933 acctctagcagacgtgtctgatttctgatactgtgggtgacgatgtgtggctatccaggc 34397992
Query: 461 ttttagaccc 470
||||||||||
Sbjct: 34397993 ttttagaccc 34398002
>dbj|AP004240.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1548_F12
Length = 118814
Score = 101 bits (51), Expect = 2e-18
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 473 caaaaatggtgcaaccatataaagcttcatcccattcactccacgagatattgcatcatc 532
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 95818 caaaaatggtgcgaccatatagagcttcatcccattcactccacgagatattgcgtcatc 95877
Query: 533 actagca 539
|| ||||
Sbjct: 95878 accagca 95884
Score = 73.8 bits (37), Expect = 5e-10
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 175 tgtcaggatcctaggtacgcagaaaggaagcatcaatggactgcagaatactggccgtat 234
||||||| ||||||||||| || |||||||| || ||||||||||| ||||| || || |
Sbjct: 95017 tgtcaggctcctaggtacgtaggaaggaagcttccatggactgcaggatactcgctgtgt 95076
Query: 235 cgaatctgaagcttctgaagctttt 259
|||| |||||| ||| |||||||||
Sbjct: 95077 cgaacctgaagtttcggaagctttt 95101
Score = 60.0 bits (30), Expect = 8e-06
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 323 gtcagatcctgctctagtaataacagggttctcgacaggcacaaagacacccgagggatt 382
||||||||||| |||||||||||| |||||||| |||||| | || |||| |||
Sbjct: 95129 gtcagatcctgttctagtaataacggggttctcaacaggcgccgctccagttgaggaatt 95188
Query: 383 cttcgctttccacacagtacct 404
||||||||||||||||||||||
Sbjct: 95189 cttcgctttccacacagtacct 95210
Score = 52.0 bits (26), Expect = 0.002
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 401 acctctagtagatgtgtctgacttctgatatactggggaccgatgtgtgcctatccatgc 460
|||||||| ||| |||||||| |||||||| |||| ||||||||| ||||||| ||
Sbjct: 95580 acctctagcagacgtgtctgatttctgatactgtgggtgacgatgtgtggctatccaggc 95639
Query: 461 ttttagaccc 470
||||||||||
Sbjct: 95640 ttttagaccc 95649
>dbj|AP004153.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1111_C07
Length = 115190
Score = 101 bits (51), Expect = 2e-18
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 473 caaaaatggtgcaaccatataaagcttcatcccattcactccacgagatattgcatcatc 532
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 14413 caaaaatggtgcgaccatatagagcttcatcccattcactccacgagatattgcgtcatc 14472
Query: 533 actagca 539
|| ||||
Sbjct: 14473 accagca 14479
Score = 73.8 bits (37), Expect = 5e-10
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 175 tgtcaggatcctaggtacgcagaaaggaagcatcaatggactgcagaatactggccgtat 234
||||||| ||||||||||| || |||||||| || ||||||||||| ||||| || || |
Sbjct: 13612 tgtcaggctcctaggtacgtaggaaggaagcttccatggactgcaggatactcgctgtgt 13671
Query: 235 cgaatctgaagcttctgaagctttt 259
|||| |||||| ||| |||||||||
Sbjct: 13672 cgaacctgaagtttcggaagctttt 13696
Score = 60.0 bits (30), Expect = 8e-06
Identities = 69/82 (84%)
Strand = Plus / Plus
Query: 323 gtcagatcctgctctagtaataacagggttctcgacaggcacaaagacacccgagggatt 382
||||||||||| |||||||||||| |||||||| |||||| | || |||| |||
Sbjct: 13724 gtcagatcctgttctagtaataacggggttctcaacaggcgccgctccagttgaggaatt 13783
Query: 383 cttcgctttccacacagtacct 404
||||||||||||||||||||||
Sbjct: 13784 cttcgctttccacacagtacct 13805
Score = 52.0 bits (26), Expect = 0.002
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 401 acctctagtagatgtgtctgacttctgatatactggggaccgatgtgtgcctatccatgc 460
|||||||| ||| |||||||| |||||||| |||| ||||||||| ||||||| ||
Sbjct: 14175 acctctagcagacgtgtctgatttctgatactgtgggtgacgatgtgtggctatccaggc 14234
Query: 461 ttttagaccc 470
||||||||||
Sbjct: 14235 ttttagaccc 14244
>dbj|AP006138.1 | Lotus japonicus genomic DNA, chromosome 1, clone:LjT37A17, TM0240,
complete sequence
Length = 121317
Score = 40.1 bits (20), Expect = 7.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 244 agcttctgaagcttttgcca 263
||||||||||||||||||||
Sbjct: 118760 agcttctgaagcttttgcca 118779
Score = 40.1 bits (20), Expect = 7.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 244 agcttctgaagcttttgcca 263
||||||||||||||||||||
Sbjct: 107909 agcttctgaagcttttgcca 107928
>emb|AL669901.26 | Mouse DNA sequence from clone RP23-35N5 on chromosome X, complete
sequence
Length = 226126
Score = 40.1 bits (20), Expect = 7.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 acatttataacaactcaaga 22
||||||||||||||||||||
Sbjct: 70172 acatttataacaactcaaga 70191
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,649,852
Number of Sequences: 3902068
Number of extensions: 3649852
Number of successful extensions: 67442
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67348
Number of HSP's gapped (non-prelim): 92
length of query: 539
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 516
effective length of database: 17,143,297,704
effective search space: 8845941615264
effective search space used: 8845941615264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)