ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd19n03 |
|---|---|
| Clone Library Name | barley_pub |
>RL27_ARATH (P51419) 60S ribosomal protein L27| Length = 135 Score = 148 bits (373), Expect = 2e-35 Identities = 76/107 (71%), Positives = 80/107 (74%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +G RDRPYGHCLVAGL KYP KVIRKDSAKKTAKKSRVK F+KLVN+ HLMPTRYTLDVD Sbjct: 31 DGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVD 90 Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 LKEVA+ LEERFKTGKNRWFFTKLRF Sbjct: 91 LKEVAT--LDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135
>RL27_PEA (Q05462) 60S ribosomal protein L27| Length = 135 Score = 142 bits (359), Expect = 6e-34 Identities = 70/107 (65%), Positives = 79/107 (73%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +GTR++PYGHCLVAG+ K+P KVI+KDSAKKTAKKSRVK F+KLVN+ HLMPTRYTLDVD Sbjct: 31 DGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD 90 Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 LK+ P LEERFKTGKNRWFFTKLRF Sbjct: 91 LKDAV--VPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135
>RL27_SOLTU (P41101) 60S ribosomal protein L27| Length = 138 Score = 141 bits (355), Expect = 2e-33 Identities = 70/108 (64%), Positives = 77/108 (71%), Gaps = 1/108 (0%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 EGTRDRPYGHCLVAG+++YPKKVIRKDSAKK KKSRVK F+KLVN+ H+MPTRYTLD D Sbjct: 31 EGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDED 90 Query: 453 LKEVASG-APXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 LK+V L ERFKTGKNRWFFTKLRF Sbjct: 91 LKDVVKDVVNADVLQARDKKVTARRTKARLAERFKTGKNRWFFTKLRF 138
>RL27_PYRST (Q02984) 60S ribosomal protein L27| Length = 134 Score = 117 bits (292), Expect = 4e-26 Identities = 61/107 (57%), Positives = 70/107 (65%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +GT RPYGH LV GL K P+KV ++ S KK AKKS +K F+K VN+ HLMPTRYTLDVD Sbjct: 31 DGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVD 90 Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 K VA+ A LEE+FKTGKNRWFFTKLRF Sbjct: 91 FKGVAAEA---QENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134
>RL27_YEAST (P38706) 60S ribosomal protein L27| Length = 136 Score = 101 bits (252), Expect = 2e-21 Identities = 50/108 (46%), Positives = 68/108 (62%), Gaps = 1/108 (0%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 EG++ P+GH LVAG+ +YP KV +K AKK AK++++K F+K+VN+ HL+PTRYTLDV+ Sbjct: 31 EGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVE 90 Query: 453 -LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 K V S EER + GKN+WFF+KLRF Sbjct: 91 AFKSVVS--TETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136
>RL27_HIPCM (P61359) 60S ribosomal protein L27| Length = 135 Score = 100 bits (250), Expect = 3e-21 Identities = 48/107 (44%), Positives = 64/107 (59%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ HLMPTRY++D+ Sbjct: 30 DGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTRYSVDIP 89 Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 L + EER+KTGKN+WFF KLRF Sbjct: 90 LDKTVVN-KDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 135
>RL27_BRARE (Q7ZV82) 60S ribosomal protein L27| Length = 135 Score = 100 bits (249), Expect = 4e-21 Identities = 48/107 (44%), Positives = 64/107 (59%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ HLMPTRY++D+ Sbjct: 30 DGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIP 89 Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 L + EER+KTGKN+WFF KLRF Sbjct: 90 LDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
>RL27_RAT (P61354) 60S ribosomal protein L27| Length = 135 Score = 99.8 bits (247), Expect = 6e-21 Identities = 48/107 (44%), Positives = 64/107 (59%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ HLMPTRY++D+ Sbjct: 30 DGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIP 89 Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 L + EER+KTGKN+WFF KLRF Sbjct: 90 LDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
>RL27_MOUSE (P61358) 60S ribosomal protein L27| Length = 135 Score = 99.8 bits (247), Expect = 6e-21 Identities = 48/107 (44%), Positives = 64/107 (59%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ HLMPTRY++D+ Sbjct: 30 DGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIP 89 Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 L + EER+KTGKN+WFF KLRF Sbjct: 90 LDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
>RL27_HUMAN (P61353) 60S ribosomal protein L27| Length = 135 Score = 99.8 bits (247), Expect = 6e-21 Identities = 48/107 (44%), Positives = 64/107 (59%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ HLMPTRY++D+ Sbjct: 30 DGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIP 89 Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 L + EER+KTGKN+WFF KLRF Sbjct: 90 LDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
>RL27_CHICK (P61355) 60S ribosomal protein L27| Length = 135 Score = 99.8 bits (247), Expect = 6e-21 Identities = 48/107 (44%), Positives = 64/107 (59%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ HLMPTRY++D+ Sbjct: 30 DGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIP 89 Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 L + EER+KTGKN+WFF KLRF Sbjct: 90 LDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
>RL27_CERNI (P61357) 60S ribosomal protein L27| Length = 135 Score = 99.8 bits (247), Expect = 6e-21 Identities = 48/107 (44%), Positives = 64/107 (59%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ HLMPTRY++D+ Sbjct: 30 DGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIP 89 Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 L + EER+KTGKN+WFF KLRF Sbjct: 90 LDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
>RL27_BOVIN (P61356) 60S ribosomal protein L27| Length = 135 Score = 99.8 bits (247), Expect = 6e-21 Identities = 48/107 (44%), Positives = 64/107 (59%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ HLMPTRY++D+ Sbjct: 30 DGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIP 89 Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 L + EER+KTGKN+WFF KLRF Sbjct: 90 LDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
>RL17_ICTPU (Q90YU1) 60S ribosomal protein L27| Length = 135 Score = 99.4 bits (246), Expect = 8e-21 Identities = 47/107 (43%), Positives = 64/107 (59%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +GT DRPY H LV+G+ +YP+KV KK AK+S++K F+K+ N+ HLMPTRY++D+ Sbjct: 30 DGTADRPYSHALVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLMPTRYSVDIP 89 Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 L + EER+KTGKN+WFF KLRF Sbjct: 90 LDKTIVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135
>RL27_CANFA (Q9XSU7) 60S ribosomal protein L27| Length = 135 Score = 98.6 bits (244), Expect = 1e-20 Identities = 47/107 (43%), Positives = 64/107 (59%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ HLMPTRY++D+ Sbjct: 30 DGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIP 89 Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 L + EE++KTGKN+WFF KLRF Sbjct: 90 LDKTVVN-KDVFRDPALKRKARREAKVKFEEKYKTGKNKWFFQKLRF 135
>RL27B_SCHPO (O74538) 60S ribosomal protein L27-B| Length = 136 Score = 97.4 bits (241), Expect = 3e-20 Identities = 46/108 (42%), Positives = 68/108 (62%), Gaps = 1/108 (0%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +G++ P+GH +VAG+ +YP KV + AK+ AK+SRVK F+K++N+ HLMPTRY L++D Sbjct: 31 QGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELD 90 Query: 453 -LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 LK + + P EE+++TGK+ WFFT LRF Sbjct: 91 NLKGLVT--PTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136
>RL27_CAEEL (P91914) 60S ribosomal protein L27| Length = 136 Score = 94.0 bits (232), Expect = 3e-19 Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 5/112 (4%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDV- 457 EG DR Y H ++AG+ +YP KV + KK K++++K FLK+V++THL+PTRY++DV Sbjct: 31 EGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVA 90 Query: 456 ----DLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 ++ + A AP EER+KTGKN+WFFTKLRF Sbjct: 91 FDKTNINKEALKAP------SKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136
>RL27A_SCHPO (O14388) 60S ribosomal protein L27-A| Length = 136 Score = 91.3 bits (225), Expect = 2e-18 Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 1/108 (0%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 +G++ P+GH +VAG+ +YP KV + AK+ A++SRVK F+K+VN+ HLMPTRY L++D Sbjct: 31 QGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELD 90 Query: 453 -LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 LK + + EE++++GK+ WFFT LRF Sbjct: 91 NLKGLITA--DTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136
>RL27_CANAL (Q9P843) 60S ribosomal protein L27| Length = 136 Score = 89.4 bits (220), Expect = 8e-18 Identities = 45/107 (42%), Positives = 62/107 (57%) Frame = -2 Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454 EGT+ P+ H +VAG+ + P KV +K AKK K+++VK F+KLVN+ HLMPTRY+LDV+ Sbjct: 31 EGTKSHPFPHAIVAGIERAPLKVTKKMDAKKVTKRTKVKPFVKLVNYNHLMPTRYSLDVE 90 Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313 + A EE+ + GKN+WFF KL F Sbjct: 91 SFKSAV-TSEALEEPSQREEAKKVVKKAFEEKHQAGKNKWFFQKLHF 136
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 692 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = -2 Query: 588 LAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVDL 451 + K PK++I D +K +++ VFLK+ N L+P Y D L Sbjct: 54 ILKQPKEIIIADKSKHYIREAISNVFLKIENKEFLIPIIYLHDSGL 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,139,027 Number of Sequences: 219361 Number of extensions: 1115725 Number of successful extensions: 2611 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2515 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2589 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
