ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19n03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL27_ARATH (P51419) 60S ribosomal protein L27 148 2e-35
2RL27_PEA (Q05462) 60S ribosomal protein L27 142 6e-34
3RL27_SOLTU (P41101) 60S ribosomal protein L27 141 2e-33
4RL27_PYRST (Q02984) 60S ribosomal protein L27 117 4e-26
5RL27_YEAST (P38706) 60S ribosomal protein L27 101 2e-21
6RL27_HIPCM (P61359) 60S ribosomal protein L27 100 3e-21
7RL27_BRARE (Q7ZV82) 60S ribosomal protein L27 100 4e-21
8RL27_RAT (P61354) 60S ribosomal protein L27 100 6e-21
9RL27_MOUSE (P61358) 60S ribosomal protein L27 100 6e-21
10RL27_HUMAN (P61353) 60S ribosomal protein L27 100 6e-21
11RL27_CHICK (P61355) 60S ribosomal protein L27 100 6e-21
12RL27_CERNI (P61357) 60S ribosomal protein L27 100 6e-21
13RL27_BOVIN (P61356) 60S ribosomal protein L27 100 6e-21
14RL17_ICTPU (Q90YU1) 60S ribosomal protein L27 99 8e-21
15RL27_CANFA (Q9XSU7) 60S ribosomal protein L27 99 1e-20
16RL27B_SCHPO (O74538) 60S ribosomal protein L27-B 97 3e-20
17RL27_CAEEL (P91914) 60S ribosomal protein L27 94 3e-19
18RL27A_SCHPO (O14388) 60S ribosomal protein L27-A 91 2e-18
19RL27_CANAL (Q9P843) 60S ribosomal protein L27 89 8e-18
20POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 30 6.0

>RL27_ARATH (P51419) 60S ribosomal protein L27|
          Length = 135

 Score =  148 bits (373), Expect = 2e-35
 Identities = 76/107 (71%), Positives = 80/107 (74%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +G RDRPYGHCLVAGL KYP KVIRKDSAKKTAKKSRVK F+KLVN+ HLMPTRYTLDVD
Sbjct: 31  DGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVD 90

Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
           LKEVA+                      LEERFKTGKNRWFFTKLRF
Sbjct: 91  LKEVAT--LDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135



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>RL27_PEA (Q05462) 60S ribosomal protein L27|
          Length = 135

 Score =  142 bits (359), Expect = 6e-34
 Identities = 70/107 (65%), Positives = 79/107 (73%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +GTR++PYGHCLVAG+ K+P KVI+KDSAKKTAKKSRVK F+KLVN+ HLMPTRYTLDVD
Sbjct: 31  DGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD 90

Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
           LK+     P                   LEERFKTGKNRWFFTKLRF
Sbjct: 91  LKDAV--VPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135



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>RL27_SOLTU (P41101) 60S ribosomal protein L27|
          Length = 138

 Score =  141 bits (355), Expect = 2e-33
 Identities = 70/108 (64%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           EGTRDRPYGHCLVAG+++YPKKVIRKDSAKK  KKSRVK F+KLVN+ H+MPTRYTLD D
Sbjct: 31  EGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIMPTRYTLDED 90

Query: 453 LKEVASG-APXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
           LK+V                         L ERFKTGKNRWFFTKLRF
Sbjct: 91  LKDVVKDVVNADVLQARDKKVTARRTKARLAERFKTGKNRWFFTKLRF 138



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>RL27_PYRST (Q02984) 60S ribosomal protein L27|
          Length = 134

 Score =  117 bits (292), Expect = 4e-26
 Identities = 61/107 (57%), Positives = 70/107 (65%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +GT  RPYGH LV GL K P+KV ++ S KK AKKS +K F+K VN+ HLMPTRYTLDVD
Sbjct: 31  DGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLMPTRYTLDVD 90

Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
            K VA+ A                    LEE+FKTGKNRWFFTKLRF
Sbjct: 91  FKGVAAEA---QENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134



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>RL27_YEAST (P38706) 60S ribosomal protein L27|
          Length = 136

 Score =  101 bits (252), Expect = 2e-21
 Identities = 50/108 (46%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           EG++  P+GH LVAG+ +YP KV +K  AKK AK++++K F+K+VN+ HL+PTRYTLDV+
Sbjct: 31  EGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVE 90

Query: 453 -LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
             K V S                       EER + GKN+WFF+KLRF
Sbjct: 91  AFKSVVS--TETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136



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>RL27_HIPCM (P61359) 60S ribosomal protein L27|
          Length = 135

 Score =  100 bits (250), Expect = 3e-21
 Identities = 48/107 (44%), Positives = 64/107 (59%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +GT DRPY H LVAG+ +YP+KV      KK AK+S++K F+K+ N+ HLMPTRY++D+ 
Sbjct: 30  DGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLMPTRYSVDIP 89

Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
           L +                          EER+KTGKN+WFF KLRF
Sbjct: 90  LDKTVVN-KDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 135



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>RL27_BRARE (Q7ZV82) 60S ribosomal protein L27|
          Length = 135

 Score =  100 bits (249), Expect = 4e-21
 Identities = 48/107 (44%), Positives = 64/107 (59%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +GT DRPY H LVAG+ +YP+KV      KK AK+S++K F+K+ N+ HLMPTRY++D+ 
Sbjct: 30  DGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLMPTRYSVDIP 89

Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
           L +                          EER+KTGKN+WFF KLRF
Sbjct: 90  LDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135



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>RL27_RAT (P61354) 60S ribosomal protein L27|
          Length = 135

 Score = 99.8 bits (247), Expect = 6e-21
 Identities = 48/107 (44%), Positives = 64/107 (59%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +GT DRPY H LVAG+ +YP+KV      KK AK+S++K F+K+ N+ HLMPTRY++D+ 
Sbjct: 30  DGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIP 89

Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
           L +                          EER+KTGKN+WFF KLRF
Sbjct: 90  LDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135



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>RL27_MOUSE (P61358) 60S ribosomal protein L27|
          Length = 135

 Score = 99.8 bits (247), Expect = 6e-21
 Identities = 48/107 (44%), Positives = 64/107 (59%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +GT DRPY H LVAG+ +YP+KV      KK AK+S++K F+K+ N+ HLMPTRY++D+ 
Sbjct: 30  DGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIP 89

Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
           L +                          EER+KTGKN+WFF KLRF
Sbjct: 90  LDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135



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>RL27_HUMAN (P61353) 60S ribosomal protein L27|
          Length = 135

 Score = 99.8 bits (247), Expect = 6e-21
 Identities = 48/107 (44%), Positives = 64/107 (59%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +GT DRPY H LVAG+ +YP+KV      KK AK+S++K F+K+ N+ HLMPTRY++D+ 
Sbjct: 30  DGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIP 89

Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
           L +                          EER+KTGKN+WFF KLRF
Sbjct: 90  LDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135



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>RL27_CHICK (P61355) 60S ribosomal protein L27|
          Length = 135

 Score = 99.8 bits (247), Expect = 6e-21
 Identities = 48/107 (44%), Positives = 64/107 (59%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +GT DRPY H LVAG+ +YP+KV      KK AK+S++K F+K+ N+ HLMPTRY++D+ 
Sbjct: 30  DGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIP 89

Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
           L +                          EER+KTGKN+WFF KLRF
Sbjct: 90  LDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135



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>RL27_CERNI (P61357) 60S ribosomal protein L27|
          Length = 135

 Score = 99.8 bits (247), Expect = 6e-21
 Identities = 48/107 (44%), Positives = 64/107 (59%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +GT DRPY H LVAG+ +YP+KV      KK AK+S++K F+K+ N+ HLMPTRY++D+ 
Sbjct: 30  DGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIP 89

Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
           L +                          EER+KTGKN+WFF KLRF
Sbjct: 90  LDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135



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>RL27_BOVIN (P61356) 60S ribosomal protein L27|
          Length = 135

 Score = 99.8 bits (247), Expect = 6e-21
 Identities = 48/107 (44%), Positives = 64/107 (59%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +GT DRPY H LVAG+ +YP+KV      KK AK+S++K F+K+ N+ HLMPTRY++D+ 
Sbjct: 30  DGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIP 89

Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
           L +                          EER+KTGKN+WFF KLRF
Sbjct: 90  LDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135



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>RL17_ICTPU (Q90YU1) 60S ribosomal protein L27|
          Length = 135

 Score = 99.4 bits (246), Expect = 8e-21
 Identities = 47/107 (43%), Positives = 64/107 (59%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +GT DRPY H LV+G+ +YP+KV      KK AK+S++K F+K+ N+ HLMPTRY++D+ 
Sbjct: 30  DGTADRPYSHALVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLMPTRYSVDIP 89

Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
           L +                          EER+KTGKN+WFF KLRF
Sbjct: 90  LDKTIVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135



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>RL27_CANFA (Q9XSU7) 60S ribosomal protein L27|
          Length = 135

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 47/107 (43%), Positives = 64/107 (59%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +GT DRPY H LVAG+ +YP+KV      KK AK+S++K F+K+ N+ HLMPTRY++D+ 
Sbjct: 30  DGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIP 89

Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
           L +                          EE++KTGKN+WFF KLRF
Sbjct: 90  LDKTVVN-KDVFRDPALKRKARREAKVKFEEKYKTGKNKWFFQKLRF 135



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>RL27B_SCHPO (O74538) 60S ribosomal protein L27-B|
          Length = 136

 Score = 97.4 bits (241), Expect = 3e-20
 Identities = 46/108 (42%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +G++  P+GH +VAG+ +YP KV +   AK+ AK+SRVK F+K++N+ HLMPTRY L++D
Sbjct: 31  QGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELD 90

Query: 453 -LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
            LK + +  P                    EE+++TGK+ WFFT LRF
Sbjct: 91  NLKGLVT--PTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136



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>RL27_CAEEL (P91914) 60S ribosomal protein L27|
          Length = 136

 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 5/112 (4%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDV- 457
           EG  DR Y H ++AG+ +YP KV +    KK  K++++K FLK+V++THL+PTRY++DV 
Sbjct: 31  EGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVA 90

Query: 456 ----DLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
               ++ + A  AP                    EER+KTGKN+WFFTKLRF
Sbjct: 91  FDKTNINKEALKAP------SKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136



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>RL27A_SCHPO (O14388) 60S ribosomal protein L27-A|
          Length = 136

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           +G++  P+GH +VAG+ +YP KV +   AK+ A++SRVK F+K+VN+ HLMPTRY L++D
Sbjct: 31  QGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELD 90

Query: 453 -LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
            LK + +                       EE++++GK+ WFFT LRF
Sbjct: 91  NLKGLITA--DTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136



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>RL27_CANAL (Q9P843) 60S ribosomal protein L27|
          Length = 136

 Score = 89.4 bits (220), Expect = 8e-18
 Identities = 45/107 (42%), Positives = 62/107 (57%)
 Frame = -2

Query: 633 EGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVD 454
           EGT+  P+ H +VAG+ + P KV +K  AKK  K+++VK F+KLVN+ HLMPTRY+LDV+
Sbjct: 31  EGTKSHPFPHAIVAGIERAPLKVTKKMDAKKVTKRTKVKPFVKLVNYNHLMPTRYSLDVE 90

Query: 453 LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 313
             + A                        EE+ + GKN+WFF KL F
Sbjct: 91  SFKSAV-TSEALEEPSQREEAKKVVKKAFEEKHQAGKNKWFFQKLHF 136



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>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic protease (EC|
           3.4.23.-); Endonuclease; Reverse transcriptase (EC
           2.7.7.49)]
          Length = 692

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 588 LAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVDL 451
           + K PK++I  D +K   +++   VFLK+ N   L+P  Y  D  L
Sbjct: 54  ILKQPKEIIIADKSKHYIREAISNVFLKIENKEFLIPIIYLHDSGL 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,139,027
Number of Sequences: 219361
Number of extensions: 1115725
Number of successful extensions: 2611
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2589
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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