>BTF3_HUMAN (P20290) Transcription factor BTF3 (RNA polymerase B transcription|
           factor 3)
          Length = 206

 Score =  132 bits (332), Expect = 1e-30
 Identities = 66/119 (55%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
 Frame = -3

Query: 685 HKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFQNPKVQASIAANTWVVSGT 509
           H+T T DDK+LQ +LK++GVN I GIEEVN+F +   VI F NPKVQAS+AANT+ ++G 
Sbjct: 78  HRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGH 137

Query: 508 PQTKKLQDLLPTIINQLGPDNLDNLRRLAEQFQKQMPGAEGGASIGAAQDDDDDVPELV 332
            +TK+L ++LP+I+NQLG D+L +LRRLAE   KQ    +G A +   +DDDD+VP+LV
Sbjct: 138 AETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQ--SVDGKAPLATGEDDDDEVPDLV 194

>BTF3_MOUSE (Q64152) Transcription factor BTF3 (RNA polymerase B transcription|
           factor 3)
          Length = 204

 Score =  132 bits (332), Expect = 1e-30
 Identities = 66/119 (55%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
 Frame = -3

Query: 685 HKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFQNPKVQASIAANTWVVSGT 509
           H+T T DDK+LQ +LK++GVN I GIEEVN+F +   VI F NPKVQAS+AANT+ ++G 
Sbjct: 76  HRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGH 135

Query: 508 PQTKKLQDLLPTIINQLGPDNLDNLRRLAEQFQKQMPGAEGGASIGAAQDDDDDVPELV 332
            +TK+L ++LP+I+NQLG D+L +LRRLAE   KQ    +G A +   +DDDD+VP+LV
Sbjct: 136 AETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQ--SVDGKAPLATGEDDDDEVPDLV 192

>BT3L4_MOUSE (Q9CQH7) Transcription factor BTF3 homolog 4 (Basic transcription|
           factor 3-like 4)
          Length = 158

 Score =  121 bits (303), Expect = 2e-27
 Identities = 61/119 (51%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
 Frame = -3

Query: 685 HKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFQNPKVQASIAANTWVVSGT 509
           H+T T DDK+LQS+LK++ VN I GIEEVN+ KDD  VI F NPKVQAS++ANT+ ++G 
Sbjct: 29  HRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGH 88

Query: 508 PQTKKLQDLLPTIINQLGPDNLDNLRRLAEQFQKQMPGAEGGASIGAAQDDDDDVPELV 332
            + K + ++LP I++QLG D+L +LR+LAEQF +Q+  ++         ++DDDVP+LV
Sbjct: 89  AEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSK-APKPEDIDEEDDDVPDLV 146

>BT3L4_HUMAN (Q96K17) Transcription factor BTF3 homolog 4 (Basic transcription|
           factor 3-like 4)
          Length = 158

 Score =  121 bits (303), Expect = 2e-27
 Identities = 61/119 (51%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
 Frame = -3

Query: 685 HKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFQNPKVQASIAANTWVVSGT 509
           H+T T DDK+LQS+LK++ VN I GIEEVN+ KDD  VI F NPKVQAS++ANT+ ++G 
Sbjct: 29  HRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGH 88

Query: 508 PQTKKLQDLLPTIINQLGPDNLDNLRRLAEQFQKQMPGAEGGASIGAAQDDDDDVPELV 332
            + K + ++LP I++QLG D+L +LR+LAEQF +Q+  ++         ++DDDVP+LV
Sbjct: 89  AEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSK-APKPEDIDEEDDDVPDLV 146

>BTF3_CAEEL (Q18885) Transcription factor BTF3 homolog (Inhibitor of cell death|
           1)
          Length = 161

 Score =  117 bits (293), Expect = 3e-26
 Identities = 60/119 (50%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
 Frame = -3

Query: 685 HKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFQNPKVQASIAANTWVVSGT 509
           HKT   DDK+LQS LK++ V  IPGIEEVN+ KDD  VI F NPKVQ S+ ANT+ V+G+
Sbjct: 36  HKTAAADDKKLQSNLKKLSVTNIPGIEEVNMIKDDGTVIHFNNPKVQTSVPANTFSVTGS 95

Query: 508 PQTKKLQDLLPTIINQLGPDNLDNLRRLAEQFQKQMPGAEGGASIGAAQDDDDDVPELV 332
              K++ ++LP I+NQLGP++L +L++LA    K  P  +G         +D+DVPELV
Sbjct: 96  ADNKQITEMLPGILNQLGPESLTHLKKLANNVTKLGPDGKG---------EDEDVPELV 145

>BT3L3_HUMAN (Q13892) Transcription factor BTF3 homolog 3 (Basic transcription|
           factor 3-like 3)
          Length = 214

 Score =  114 bits (286), Expect = 2e-25
 Identities = 58/118 (49%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
 Frame = -3

Query: 685 HKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFQNPKVQASIAANTWVVSGT 509
           H+T T DDK+LQ +LK++ VN I GIE+VN+F +   VI F NPK QAS+A NT+ ++G 
Sbjct: 64  HRTATADDKKLQFSLKKLQVNNISGIEKVNMFTNQGTVIHFNNPKFQASLAVNTFTITGH 123

Query: 508 PQTKKLQDLLPTIINQLGPDNLDNLRRLAEQFQKQMPGAEGGASIGAAQDDDDDVPEL 335
            + K++ ++LP++++QLG D+L +LRRLAE   KQ    +G A +    DDDD VPEL
Sbjct: 124 AEAKQVTEMLPSVLSQLGADSLTSLRRLAEVLPKQ--PVDGKAPLATGGDDDDGVPEL 179

>BTF3_SCHPO (Q92371) Transcription factor BTF3 homolog|
          Length = 151

 Score = 86.7 bits (213), Expect = 6e-17
 Identities = 47/116 (40%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
 Frame = -3

Query: 676 TTTDDKRLQSTLKRVGVNTIPGIEEVNIFKDDV-VIQFQNPKVQASIAANTWVVSGTPQT 500
           +  DDK++Q  LK++ +  + GI+EVN+FK+D  VI F+ P V +S+   T  + G  + 
Sbjct: 34  SAADDKKVQGALKKLNMQNLAGIQEVNMFKEDGGVINFRAPTVHSSLPNETTAIYGKAEE 93

Query: 499 KKLQDLLPTIINQLGPDNLDNLRRLAEQFQKQMPGAEGGASIGAAQDDDDDVPELV 332
           K L ++LP I+N LGP++L  LR++AEQ   ++   E GA    AQ DD ++P+LV
Sbjct: 94  KTLSEILPGILNNLGPESLTALRQMAEQL--KVSEGEKGAD---AQADDGEIPDLV 144

>EGD1_YEAST (Q02642) BTF3 homolog EGD1 (GAL4 DNA-binding enhancer protein 1)|
          Length = 157

 Score = 85.1 bits (209), Expect = 2e-16
 Identities = 51/118 (43%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
 Frame = -3

Query: 667 DDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFQNPKVQASIAANTWVVSGTPQTKKL 491
           DD +LQS L ++   TI  + E N FKDD  V+ F    VQ +   NT V  G PQ K L
Sbjct: 40  DDTKLQSQLAKLHAVTIDNVAEANFFKDDGKVMHFNKVGVQVAAQHNTSVFYGLPQEKNL 99

Query: 490 QDLLPTIINQLGPDNLDNLRRLAEQFQKQMPGAEGGASIGAAQDDDDDVPELVPGETF 317
           QDL P II+QLGP+ +  L +LA Q +K    A        A+  D+ +PELV G+TF
Sbjct: 100 QDLFPGIISQLGPEAIQALSQLAAQMEKHEAKAPAD-----AEKKDEAIPELVEGQTF 152

>BT3L1_HUMAN (Q13890) Transcription factor BTF3 homolog 1 (Basic transcription|
           factor 3-like 1)
          Length = 111

 Score = 77.4 bits (189), Expect = 4e-14
 Identities = 38/70 (54%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
 Frame = -3

Query: 676 TTTDDKRLQSTLKRVGVNTIPGIEEVNIF-KDDVVIQFQNPKVQASIAANTWVVSGTPQT 500
           TT +DK+ Q +LK++GVN IPGIEEVN+F     VI F NP+VQAS+AANT+ ++G  +T
Sbjct: 33  TTAEDKKFQFSLKKLGVNNIPGIEEVNMFTHQGTVIHFNNPEVQASLAANTFTMTGHAET 92

Query: 499 KKLQDLLPTI 470
           K+L ++L +I
Sbjct: 93  KQLTEMLLSI 102

>BTT1_YEAST (P40314) BTF3 homolog BTT1|
          Length = 149

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
 Frame = -3

Query: 667 DDKRLQSTLKRVGVNTIPGIEEVNIFKDD-VVIQFQNPKVQASIAANTWVVSGTPQTKKL 491
           D+ +LQ+ L ++   TI  + E N FK +  V+ F +  VQ +   N  ++ G P+   L
Sbjct: 40  DNTKLQAELHKLHPMTIENVAEANFFKKNGKVLHFNSAVVQIAPQCNLTMIHGQPKENTL 99

Query: 490 QDLLPTIINQLGPDNLDNLRRLAEQFQKQ 404
             L P++ +QLG   L+ L  LA   + +
Sbjct: 100 NGLYPSVASQLGSQELEYLTGLAHNLENE 128

>NACA_YEAST (P38879) Nascent polypeptide-associated complex alpha subunit EGD2|
           (NAC-alpha) (Alpha-NAC) (GAL4 DNA-binding enhancer
           protein 2)
          Length = 173

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
 Frame = -3

Query: 667 DDKRLQSTLKRVGVNTIPGIEEVNIFK-DDVVIQFQNPKVQASIAANTWVVSGTPQTKKL 491
           ++K+ +  + ++G+  IPGI  V   K D+ +   + P+V  S   N +VV G  +    
Sbjct: 15  NEKKARELIGKLGLKQIPGIIRVTFRKKDNQIYAIEKPEVFRSAGGN-YVVFGEAKVDNF 73

Query: 490 QDLLPTIINQ-----LGPDNLDNLRRLAEQFQKQMPGAEGGASIGAAQDDDDD 347
              L     Q     + P N D   +  E  Q  M  A  G+   AA++DD++
Sbjct: 74  TQKLAAAQQQAQASGIMPSNEDVATKSPEDIQADMQAAAEGSVNAAAEEDDEE 126

>BT3L2_HUMAN (Q13891) Transcription factor BTF3 homolog 2 (Basic transcription|
           factor 3-like 2)
          Length = 67

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -3

Query: 685 HKTTTTDDKRLQSTLKRVGVNTIPGIEEVNIFKDDVVI 572
           H+T T +DK+ Q +LK++    I GIEEVN+F +   +
Sbjct: 31  HRTATANDKKRQFSLKKL---EISGIEEVNMFTNQATV 65

>YOCA_CAEEL (Q23280) Hypothetical protein ZC395.10 in chromosome III|
          Length = 175

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 418 QFQKQMPGAEGGASIGAAQDD--DDDVPELVPGE 323
           Q+  QM GA GGA  G  +DD  DDD+P+L   E
Sbjct: 133 QYMSQMGGA-GGADFGGLEDDEEDDDMPDLEDNE 165

>MURG_SHEON (Q8CX35) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 362

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
 Frame = -3

Query: 598 NIFKDDVVIQFQNPKVQASIAANTWVVSGTPQTKKLQDLLP------------TIINQLG 455
           N  + +++     PK  A  A    VV G+   K   DL+P            T+ +Q+G
Sbjct: 162 NPIRRELIALGGEPKQTADEALKVLVVGGSLGAKVFNDLMPEVVAALSKQQSITVWHQVG 221

Query: 454 PDNLDNLRRLAEQFQKQMPGAEGGASIGAAQDD 356
            DNL  ++   +Q      G +GG ++    DD
Sbjct: 222 KDNLAGVKSAYQQ-----QGQDGGVNVAEFIDD 249

>KAD2_ANASP (Q8Z0M3) Probable adenylate kinase 2 (EC 2.7.4.3) (ATP-AMP|
           transphosphorylase 2)
          Length = 184

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
 Frame = -3

Query: 649 STLKRVGVNTIPGIEEVNIFKDDVVIQFQNPKVQASIAANTWVVSGTPQTKKLQDLLPTI 470
           S L  +G +  P + +  +  D+++I+    +++ S   + WV+ G P+T    + L  +
Sbjct: 40  SHLSELGRHAQPYMIKGELVPDEMIIELIRLRLKKSDVIDGWVLEGYPRTAFQAEELDFL 99

Query: 469 INQLGPDNLDNLRRLAEQFQKQMPGA-EGGASIGAAQDDDDDVPELV 332
           +++LG       ++L      Q+P A     S+G +  DD   PE+V
Sbjct: 100 LDELG-------QKLDWAIYLQVPEAVMVSRSLGRSLPDDQ--PEIV 137

>KAD2_SYNY3 (P72641) Probable adenylate kinase 2 (EC 2.7.4.3) (ATP-AMP|
           transphosphorylase 2)
          Length = 181

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = -3

Query: 634 VGVNTIPGIEEVNIFKDDVVIQFQNPKVQASIAANTWVVSGTPQTKKLQDLLPTIINQLG 455
           +G+   P +E  ++  D ++I+F   ++        W++ G P+T    + L  ++  LG
Sbjct: 45  LGIKAKPYVERGDLLPDPMMIEFIQQRLVQEDGGQGWILEGYPRTAFQAEELDFLLEDLG 104

>UBQL1_RAT (Q9JJP9) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1)
          Length = 582

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 19/100 (19%)
 Frame = -3

Query: 565 QNPKVQASIAANTWVVSGTPQ-TKKLQDLLPTIINQL-GPDNL----------------D 440
           QNP + A +  N  + +G PQ  ++++  LPT + Q+  PD L                 
Sbjct: 403 QNPDLAAQMMLNNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQ 462

Query: 439 NLRRLAEQFQKQMPGAEGGASIG-AAQDDDDDVPELVPGE 323
            L+ LA +    +PG   G + G +        P   PGE
Sbjct: 463 GLQTLATEAPGLIPGFTPGLAAGNSGGPAGTTAPSTAPGE 502

>HSP7M_PHAVU (Q01899) Heat shock 70 kDa protein, mitochondrial precursor|
          Length = 675

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
 Frame = -3

Query: 499 KKLQDLLPTIINQLGPDNLDNLRRLAEQFQKQMP--------GAEGGASIGAAQDDDDDV 344
           K+++D +  +   +  DN+D ++   +   K +         G+ GG+S G +Q   D  
Sbjct: 606 KEIEDAVSDLRKAMSGDNVDEIKSKLDAANKAVSKIGEHMSGGSSGGSSAGGSQGGGDQA 665

Query: 343 PE 338
           PE
Sbjct: 666 PE 667


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,832,216
Number of Sequences: 219361
Number of extensions: 1687274
Number of successful extensions: 5329
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5311
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)