Clone Name | rbasd19m05 |
---|---|
Clone Library Name | barley_pub |
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19 map E30331S, complete sequence Length = 164820 Score = 464 bits (234), Expect = e-127 Identities = 480/562 (85%) Strand = Plus / Plus Query: 99 agcttttatttccaatcaagcatgtctaagagccacaagatctcaggctcggaccttgcc 158 ||||| ||||||||||||||||||||||||||||| | || |||| ||| |||||||| Sbjct: 137969 agcttctatttccaatcaagcatgtctaagagccaaagaatttcagtctccgaccttgct 138028 Query: 159 gcatcacaaaaatctagttcaataccaaatacctctatagtgtttgttcctttatacagg 218 ||||||||||| ||||| || ||||||||||| || || |||||||||||| |||||| Sbjct: 138029 gcatcacaaaagtctagctctataccaaatacttcgatgacgtttgttcctttgtacagg 138088 Query: 219 aaaagcaaggacatccacgcccggatgtctgatatgaaagggtgtctgggcgaaaacctg 278 |||||||| |||||||| || |||||||||||||| ||||||| ||| || |||||| | Sbjct: 138089 aaaagcaaagacatccatgctcggatgtctgatataaaagggtatcttggtgaaaactgg 138148 Query: 279 agatattcatatgccaatgctcgtgctgcattgctgtcaatgtaatcaaaacttgacgta 338 |||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||| || Sbjct: 138149 agatattcatatgccaatgcccgtgctgcgttgctgtcgatgtaatcaaaagttgactta 138208 Query: 339 ttaattatgcaactcatcttgttggtgtccttacggtgagcaagaacagacacggtgatg 398 ||||| | |||| |||||| || || ||||| ||||| |||||||||||||| |||||| Sbjct: 138209 ttaatgacgcaagccatcttctttgtatcctttcggtgggcaagaacagacacagtgatg 138268 Query: 399 gatggccccatagggactgtcagcttgggttcgacttccatcatcaaaatgcagtctgcg 458 ||||||||||||| | | |||||||||||| || |||||||||| ||||||||| | Sbjct: 138269 gatggccccatagttatttccagcttgggttcaacctccatcatcagaatgcagtcagga 138328 Query: 459 gcattcaggtgtgcaacaagtacatctggtattccgctgggtgtgttctgtagacctgct 518 ||| ||| ||||| ||||||||||| || || || | ||||| ||||| |||||| || Sbjct: 138329 gcagtcaaatgtgctacaagtacatccggaatgccacaaggtgtattctgcagacctcct 138388 Query: 519 ctaagaatgcagcctgaaactgcttgagagaagatcaatgatccctcaagccacatgtca 578 | ||| |||||||||||||| |||||||||||||| | |||||| ||||||||||||||| Sbjct: 138389 cgaaggatgcagcctgaaacagcttgagagaagatgagtgatccgtcaagccacatgtca 138448 Query: 579 atgtaaaacaccagatccttgaaagtgagcttaggtacaggaagatgcactgtcttccgt 638 ||||||||||| ||||||| ||| |||||||| ||||||||||| ||| || | ||||| Sbjct: 138449 atgtaaaacacaagatcctcgaatgtgagctttggtacaggaaggtgctgtggcgtccgt 138508 Query: 639 ggcttggagaatgttaaataga 660 || |||||||| |||||||||| Sbjct: 138509 ggtttggagaaggttaaataga 138530 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 50 catgaacattctttacatgcctcaaa 75 |||||||||||||||||||| ||||| Sbjct: 137921 catgaacattctttacatgcgtcaaa 137946
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 464 bits (234), Expect = e-127 Identities = 480/562 (85%) Strand = Plus / Minus Query: 99 agcttttatttccaatcaagcatgtctaagagccacaagatctcaggctcggaccttgcc 158 ||||| ||||||||||||||||||||||||||||| | || |||| ||| |||||||| Sbjct: 17425774 agcttctatttccaatcaagcatgtctaagagccaaagaatttcagtctccgaccttgct 17425715 Query: 159 gcatcacaaaaatctagttcaataccaaatacctctatagtgtttgttcctttatacagg 218 ||||||||||| ||||| || ||||||||||| || || |||||||||||| |||||| Sbjct: 17425714 gcatcacaaaagtctagctctataccaaatacttcgatgacgtttgttcctttgtacagg 17425655 Query: 219 aaaagcaaggacatccacgcccggatgtctgatatgaaagggtgtctgggcgaaaacctg 278 |||||||| |||||||| || |||||||||||||| ||||||| ||| || |||||| | Sbjct: 17425654 aaaagcaaagacatccatgctcggatgtctgatataaaagggtatcttggtgaaaactgg 17425595 Query: 279 agatattcatatgccaatgctcgtgctgcattgctgtcaatgtaatcaaaacttgacgta 338 |||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||| || Sbjct: 17425594 agatattcatatgccaatgcccgtgctgcgttgctgtcgatgtaatcaaaagttgactta 17425535 Query: 339 ttaattatgcaactcatcttgttggtgtccttacggtgagcaagaacagacacggtgatg 398 ||||| | |||| |||||| || || ||||| ||||| |||||||||||||| |||||| Sbjct: 17425534 ttaatgacgcaagccatcttctttgtatcctttcggtgggcaagaacagacacagtgatg 17425475 Query: 399 gatggccccatagggactgtcagcttgggttcgacttccatcatcaaaatgcagtctgcg 458 ||||||||||||| | | |||||||||||| || |||||||||| ||||||||| | Sbjct: 17425474 gatggccccatagttatttccagcttgggttcaacctccatcatcagaatgcagtcagga 17425415 Query: 459 gcattcaggtgtgcaacaagtacatctggtattccgctgggtgtgttctgtagacctgct 518 ||| ||| ||||| ||||||||||| || || || | ||||| ||||| |||||| || Sbjct: 17425414 gcagtcaaatgtgctacaagtacatccggaatgccacaaggtgtattctgcagacctcct 17425355 Query: 519 ctaagaatgcagcctgaaactgcttgagagaagatcaatgatccctcaagccacatgtca 578 | ||| |||||||||||||| |||||||||||||| | |||||| ||||||||||||||| Sbjct: 17425354 cgaaggatgcagcctgaaacagcttgagagaagatgagtgatccgtcaagccacatgtca 17425295 Query: 579 atgtaaaacaccagatccttgaaagtgagcttaggtacaggaagatgcactgtcttccgt 638 ||||||||||| ||||||| ||| |||||||| ||||||||||| ||| || | ||||| Sbjct: 17425294 atgtaaaacacaagatcctcgaatgtgagctttggtacaggaaggtgctgtggcgtccgt 17425235 Query: 639 ggcttggagaatgttaaataga 660 || |||||||| |||||||||| Sbjct: 17425234 ggtttggagaaggttaaataga 17425213 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 50 catgaacattctttacatgcctcaaa 75 |||||||||||||||||||| ||||| Sbjct: 17425822 catgaacattctttacatgcgtcaaa 17425797
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 464 bits (234), Expect = e-127 Identities = 480/562 (85%) Strand = Plus / Minus Query: 99 agcttttatttccaatcaagcatgtctaagagccacaagatctcaggctcggaccttgcc 158 ||||| ||||||||||||||||||||||||||||| | || |||| ||| |||||||| Sbjct: 17419315 agcttctatttccaatcaagcatgtctaagagccaaagaatttcagtctccgaccttgct 17419256 Query: 159 gcatcacaaaaatctagttcaataccaaatacctctatagtgtttgttcctttatacagg 218 ||||||||||| ||||| || ||||||||||| || || |||||||||||| |||||| Sbjct: 17419255 gcatcacaaaagtctagctctataccaaatacttcgatgacgtttgttcctttgtacagg 17419196 Query: 219 aaaagcaaggacatccacgcccggatgtctgatatgaaagggtgtctgggcgaaaacctg 278 |||||||| |||||||| || |||||||||||||| ||||||| ||| || |||||| | Sbjct: 17419195 aaaagcaaagacatccatgctcggatgtctgatataaaagggtatcttggtgaaaactgg 17419136 Query: 279 agatattcatatgccaatgctcgtgctgcattgctgtcaatgtaatcaaaacttgacgta 338 |||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||| || Sbjct: 17419135 agatattcatatgccaatgcccgtgctgcgttgctgtcgatgtaatcaaaagttgactta 17419076 Query: 339 ttaattatgcaactcatcttgttggtgtccttacggtgagcaagaacagacacggtgatg 398 ||||| | |||| |||||| || || ||||| ||||| |||||||||||||| |||||| Sbjct: 17419075 ttaatgacgcaagccatcttctttgtatcctttcggtgggcaagaacagacacagtgatg 17419016 Query: 399 gatggccccatagggactgtcagcttgggttcgacttccatcatcaaaatgcagtctgcg 458 ||||||||||||| | | |||||||||||| || |||||||||| ||||||||| | Sbjct: 17419015 gatggccccatagttatttccagcttgggttcaacctccatcatcagaatgcagtcagga 17418956 Query: 459 gcattcaggtgtgcaacaagtacatctggtattccgctgggtgtgttctgtagacctgct 518 ||| ||| ||||| ||||||||||| || || || | ||||| ||||| |||||| || Sbjct: 17418955 gcagtcaaatgtgctacaagtacatccggaatgccacaaggtgtattctgcagacctcct 17418896 Query: 519 ctaagaatgcagcctgaaactgcttgagagaagatcaatgatccctcaagccacatgtca 578 | ||| |||||||||||||| |||||||||||||| | |||||| ||||||||||||||| Sbjct: 17418895 cgaaggatgcagcctgaaacagcttgagagaagatgagtgatccgtcaagccacatgtca 17418836 Query: 579 atgtaaaacaccagatccttgaaagtgagcttaggtacaggaagatgcactgtcttccgt 638 ||||||||||| ||||||| ||| |||||||| ||||||||||| ||| || | ||||| Sbjct: 17418835 atgtaaaacacaagatcctcgaatgtgagctttggtacaggaaggtgctgtggcgtccgt 17418776 Query: 639 ggcttggagaatgttaaataga 660 || |||||||| |||||||||| Sbjct: 17418775 ggtttggagaaggttaaataga 17418754 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 50 catgaacattctttacatgcctcaaa 75 |||||||||||||||||||| ||||| Sbjct: 17419363 catgaacattctttacatgcgtcaaa 17419338
>dbj|AK069736.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031J08, full insert sequence Length = 1224 Score = 464 bits (234), Expect = e-127 Identities = 480/562 (85%) Strand = Plus / Minus Query: 99 agcttttatttccaatcaagcatgtctaagagccacaagatctcaggctcggaccttgcc 158 ||||| ||||||||||||||||||||||||||||| | || |||| ||| |||||||| Sbjct: 1087 agcttctatttccaatcaagcatgtctaagagccaaagaatttcagtctccgaccttgct 1028 Query: 159 gcatcacaaaaatctagttcaataccaaatacctctatagtgtttgttcctttatacagg 218 ||||||||||| ||||| || ||||||||||| || || |||||||||||| |||||| Sbjct: 1027 gcatcacaaaagtctagctctataccaaatacttcgatgacgtttgttcctttgtacagg 968 Query: 219 aaaagcaaggacatccacgcccggatgtctgatatgaaagggtgtctgggcgaaaacctg 278 |||||||| |||||||| || |||||||||||||| ||||||| ||| || |||||| | Sbjct: 967 aaaagcaaagacatccatgctcggatgtctgatataaaagggtatcttggtgaaaactgg 908 Query: 279 agatattcatatgccaatgctcgtgctgcattgctgtcaatgtaatcaaaacttgacgta 338 |||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||| || Sbjct: 907 agatattcatatgccaatgcccgtgctgcgttgctgtcgatgtaatcaaaagttgactta 848 Query: 339 ttaattatgcaactcatcttgttggtgtccttacggtgagcaagaacagacacggtgatg 398 ||||| | |||| |||||| || || ||||| ||||| |||||||||||||| |||||| Sbjct: 847 ttaatgacgcaagccatcttctttgtatcctttcggtgggcaagaacagacacagtgatg 788 Query: 399 gatggccccatagggactgtcagcttgggttcgacttccatcatcaaaatgcagtctgcg 458 ||||||||||||| | | |||||||||||| || |||||||||| ||||||||| | Sbjct: 787 gatggccccatagttatttccagcttgggttcaacctccatcatcagaatgcagtcagga 728 Query: 459 gcattcaggtgtgcaacaagtacatctggtattccgctgggtgtgttctgtagacctgct 518 ||| ||| ||||| ||||||||||| || || || | ||||| ||||| |||||| || Sbjct: 727 gcagtcaaatgtgctacaagtacatccggaatgccacaaggtgtattctgcagacctcct 668 Query: 519 ctaagaatgcagcctgaaactgcttgagagaagatcaatgatccctcaagccacatgtca 578 | ||| |||||||||||||| |||||||||||||| | |||||| ||||||||||||||| Sbjct: 667 cgaaggatgcagcctgaaacagcttgagagaagatgagtgatccgtcaagccacatgtca 608 Query: 579 atgtaaaacaccagatccttgaaagtgagcttaggtacaggaagatgcactgtcttccgt 638 ||||||||||| ||||||| ||| |||||||| ||||||||||| ||| || | ||||| Sbjct: 607 atgtaaaacacaagatcctcgaatgtgagctttggtacaggaaggtgctgtggcgtccgt 548 Query: 639 ggcttggagaatgttaaataga 660 || |||||||| |||||||||| Sbjct: 547 ggtttggagaaggttaaataga 526 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 50 catgaacattctttacatgcctcaaa 75 |||||||||||||||||||| ||||| Sbjct: 1135 catgaacattctttacatgcgtcaaa 1110
>ref|XM_468735.1| Oryza sativa (japonica cultivar-group), mRNA Length = 753 Score = 460 bits (232), Expect = e-126 Identities = 475/556 (85%) Strand = Plus / Minus Query: 105 tatttccaatcaagcatgtctaagagccacaagatctcaggctcggaccttgccgcatca 164 ||||||||||||||||||||||||||||| | || |||| ||| |||||||| |||||| Sbjct: 752 tatttccaatcaagcatgtctaagagccaaagaatttcagtctccgaccttgctgcatca 693 Query: 165 caaaaatctagttcaataccaaatacctctatagtgtttgttcctttatacaggaaaagc 224 ||||| ||||| || ||||||||||| || || |||||||||||| |||||||||||| Sbjct: 692 caaaagtctagctctataccaaatacttcgatgacgtttgttcctttgtacaggaaaagc 633 Query: 225 aaggacatccacgcccggatgtctgatatgaaagggtgtctgggcgaaaacctgagatat 284 || |||||||| || |||||||||||||| ||||||| ||| || |||||| ||||||| Sbjct: 632 aaagacatccatgctcggatgtctgatataaaagggtatcttggtgaaaactggagatat 573 Query: 285 tcatatgccaatgctcgtgctgcattgctgtcaatgtaatcaaaacttgacgtattaatt 344 |||||||||||||| |||||||| |||||||| |||||||||||| ||||| ||||||| Sbjct: 572 tcatatgccaatgcccgtgctgcgttgctgtcgatgtaatcaaaagttgacttattaatg 513 Query: 345 atgcaactcatcttgttggtgtccttacggtgagcaagaacagacacggtgatggatggc 404 | |||| |||||| || || ||||| ||||| |||||||||||||| |||||||||||| Sbjct: 512 acgcaagccatcttctttgtatcctttcggtgggcaagaacagacacagtgatggatggc 453 Query: 405 cccatagggactgtcagcttgggttcgacttccatcatcaaaatgcagtctgcggcattc 464 ||||||| | | |||||||||||| || |||||||||| ||||||||| | ||| || Sbjct: 452 cccatagttatttccagcttgggttcaacctccatcatcagaatgcagtcaggagcagtc 393 Query: 465 aggtgtgcaacaagtacatctggtattccgctgggtgtgttctgtagacctgctctaaga 524 | ||||| ||||||||||| || || || | ||||| ||||| |||||| ||| ||| Sbjct: 392 aaatgtgctacaagtacatccggaatgccacaaggtgtattctgcagacctcctcgaagg 333 Query: 525 atgcagcctgaaactgcttgagagaagatcaatgatccctcaagccacatgtcaatgtaa 584 |||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||| Sbjct: 332 atgcagcctgaaacagcttgagagaagatgagtgatccgtcaagccacatgtcaatgtaa 273 Query: 585 aacaccagatccttgaaagtgagcttaggtacaggaagatgcactgtcttccgtggcttg 644 ||||| ||||||| ||| |||||||| ||||||||||| ||| || | ||||||| ||| Sbjct: 272 aacacaagatcctcgaatgtgagctttggtacaggaaggtgctgtggcgtccgtggtttg 213 Query: 645 gagaatgttaaataga 660 ||||| |||||||||| Sbjct: 212 gagaaggttaaataga 197
>gb|AF288092.1| Naegleria gruberi mitochondrial DNA, complete genome Length = 49843 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 taaagctatatatttagtacta 27 |||||||||||||||||||||| Sbjct: 40302 taaagctatatatttagtacta 40323
>gb|AC116318.7| Mus musculus BAC clone RP23-80L14 from chromosome 1, complete sequence Length = 235490 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 ttcctttatacaggaaaagca 225 ||||||||||||||||||||| Sbjct: 172690 ttcctttatacaggaaaagca 172710
>emb|AL020994.1|HS929C8 Human DNA sequence from clone CTA-929C8 on chromosome 22q12.1-12.3, complete sequence Length = 139190 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 520 taagaatgcagcctgaaactg 540 ||||||||||||||||||||| Sbjct: 60649 taagaatgcagcctgaaactg 60629
>emb|CR936633.1| Homo sapiens mRNA; cDNA DKFZp781F1219 (from clone DKFZp781F1219) Length = 5069 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 520 taagaatgcagcctgaaactg 540 ||||||||||||||||||||| Sbjct: 2623 taagaatgcagcctgaaactg 2603
>emb|CR627208.1| Homo sapiens mRNA; cDNA DKFZp781G1319 (from clone DKFZp781G1319) Length = 5069 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 520 taagaatgcagcctgaaactg 540 ||||||||||||||||||||| Sbjct: 2623 taagaatgcagcctgaaactg 2603
>gb|AC167717.3| Oryctolagus cuniculus, clone Oryctolagus cuniculus-16721157J10, complete sequence Length = 33881 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 159 gcatcacaaaaatctagttca 179 ||||||||||||||||||||| Sbjct: 4442 gcatcacaaaaatctagttca 4462
>gb|AY018040.1| Oryza sativa microsatellite MRG0365 containing (AG)X26, genomic sequence Length = 252 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 608 cttaggtacaggaagatgca 627 |||||||||||||||||||| Sbjct: 17 cttaggtacaggaagatgca 36
>ref|XM_883113.1| PREDICTED: Bos taurus similar to H3 histone, family 3B, transcript variant 5 (LOC617051), mRNA Length = 2868 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 ccacatgtcaatgtaaaaca 588 |||||||||||||||||||| Sbjct: 1211 ccacatgtcaatgtaaaaca 1192
>ref|XM_883110.1| PREDICTED: Bos taurus similar to H3 histone, family 3B, transcript variant 4 (LOC617051), mRNA Length = 2778 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 ccacatgtcaatgtaaaaca 588 |||||||||||||||||||| Sbjct: 1121 ccacatgtcaatgtaaaaca 1102
>ref|XM_883106.1| PREDICTED: Bos taurus similar to H3 histone, family 3B, transcript variant 3 (LOC617051), mRNA Length = 1690 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 ccacatgtcaatgtaaaaca 588 |||||||||||||||||||| Sbjct: 1121 ccacatgtcaatgtaaaaca 1102
>ref|XM_883102.1| PREDICTED: Bos taurus similar to H3 histone, family 3B, transcript variant 2 (LOC617051), mRNA Length = 2680 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 ccacatgtcaatgtaaaaca 588 |||||||||||||||||||| Sbjct: 1023 ccacatgtcaatgtaaaaca 1004
>ref|XM_870003.1| PREDICTED: Bos taurus similar to H3 histone, family 3B, transcript variant 1 (LOC617051), mRNA Length = 841 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 569 ccacatgtcaatgtaaaaca 588 |||||||||||||||||||| Sbjct: 841 ccacatgtcaatgtaaaaca 822
>ref|XM_421916.1| PREDICTED: Gallus gallus similar to 130kDa-Ins(1,4,5)P3 binding protein (LOC424060), partial mRNA Length = 3264 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 catcacaaaaatctagttcaatac 183 ||||||||| |||||||||||||| Sbjct: 1321 catcacaaacatctagttcaatac 1298
>gb|AC133906.9| Mus musculus chromosome 14, clone RP24-230P12, complete sequence Length = 176220 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 cttttatttccaatcaagca 120 |||||||||||||||||||| Sbjct: 7558 cttttatttccaatcaagca 7577
>gb|AC133945.2| Mus musculus chromosome 18 clone RP24-146N1, complete sequence Length = 139630 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 ttatacaggaaaagcaaggacatc 233 ||||||||||||||||| |||||| Sbjct: 73866 ttatacaggaaaagcaatgacatc 73843
>emb|BX005408.12| Zebrafish DNA sequence from clone DKEY-156H23 in linkage group 9, complete sequence Length = 210207 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 catcttaaagctatatattt 20 |||||||||||||||||||| Sbjct: 166995 catcttaaagctatatattt 166976
>gb|AC092383.4| Homo sapiens chromosome 16 clone RP11-787D11, complete sequence Length = 179677 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 81 aaatcacaactaaaaggtagcttttatttcca 112 |||||||| |||||| |||| ||||||||||| Sbjct: 149576 aaatcacacctaaaatgtaggttttatttcca 149545
>emb|AL928552.7| Mouse DNA sequence from clone RP23-30I12 on chromosome 4, complete sequence Length = 206507 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 199 tgtttgttcctttatacaggaaaa 222 ||||| |||||||||||||||||| Sbjct: 206140 tgtttattcctttatacaggaaaa 206163
>emb|AL845294.3| Mouse DNA sequence from clone RP23-285N19 on chromosome 4 Contains a ribosomal protein L9 (Rpl9) pseudogene, a cysteine-rich secretory protein 1 (Crisp1) pseudogene and a eukaryotic translation initiation factor 1A (Eif1a) pseudogene, complete sequence Length = 167418 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 199 tgtttgttcctttatacaggaaaa 222 ||||| |||||||||||||||||| Sbjct: 1633 tgtttattcctttatacaggaaaa 1656
>gb|AC154689.2| Mus musculus BAC clone RP24-329P8 from chromosome 14, complete sequence Length = 124803 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 cttttatttccaatcaagca 120 |||||||||||||||||||| Sbjct: 65528 cttttatttccaatcaagca 65509
>gb|AC093805.3| Homo sapiens BAC clone RP11-326O9 from 4, complete sequence Length = 165538 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 agcttttatttccaatcaag 118 |||||||||||||||||||| Sbjct: 55181 agcttttatttccaatcaag 55162
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 608 cttaggtacaggaagatgca 627 |||||||||||||||||||| Sbjct: 23737261 cttaggtacaggaagatgca 23737242
>gb|AC009132.9| Homo sapiens chromosome 16 clone RP11-503F24, complete sequence Length = 216342 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 81 aaatcacaactaaaaggtagcttttatttcca 112 |||||||| |||||| |||| ||||||||||| Sbjct: 20077 aaatcacacctaaaatgtaggttttatttcca 20046
>dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1060_D03 Length = 102178 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 608 cttaggtacaggaagatgca 627 |||||||||||||||||||| Sbjct: 81875 cttaggtacaggaagatgca 81856
>gb|AC011602.17| Homo sapiens 12 BAC RP11-362A1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 97995 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 atgcaactcatcttgttggt 364 |||||||||||||||||||| Sbjct: 50810 atgcaactcatcttgttggt 50829
>emb|AL357054.14| Human DNA sequence from clone RP11-532F6 on chromosome 6, complete sequence Length = 121656 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aacattctttacatgcctca 73 |||||||||||||||||||| Sbjct: 85144 aacattctttacatgcctca 85163
>emb|AL627409.9| Mouse DNA sequence from clone RP23-430L23 on chromosome X, complete sequence Length = 189295 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 ttccatcatcaaaatgcagt 453 |||||||||||||||||||| Sbjct: 88370 ttccatcatcaaaatgcagt 88351
>dbj|AP005139.2| Homo sapiens genomic DNA, chromosome 18p clone:RP11-93H10, complete sequences Length = 165500 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 gttcctttatacaggaaaag 223 |||||||||||||||||||| Sbjct: 120847 gttcctttatacaggaaaag 120828 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,850,686 Number of Sequences: 3902068 Number of extensions: 5850686 Number of successful extensions: 104801 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104641 Number of HSP's gapped (non-prelim): 155 length of query: 660 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 637 effective length of database: 17,143,297,704 effective search space: 10920280637448 effective search space used: 10920280637448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)