ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19m05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome... 464 e-127
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 464 e-127
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 464 e-127
4dbj|AK069736.1| Oryza sativa (japonica cultivar-group) cDNA clon... 464 e-127
5ref|XM_468735.1| Oryza sativa (japonica cultivar-group), mRNA 460 e-126
6gb|AF288092.1| Naegleria gruberi mitochondrial DNA, complete genome 44 0.58
7gb|AC116318.7| Mus musculus BAC clone RP23-80L14 from chromosome... 42 2.3
8emb|AL020994.1|HS929C8 Human DNA sequence from clone CTA-929C8 o... 42 2.3
9emb|CR936633.1| Homo sapiens mRNA; cDNA DKFZp781F1219 (from clon... 42 2.3
10emb|CR627208.1| Homo sapiens mRNA; cDNA DKFZp781G1319 (from clon... 42 2.3
11gb|AC167717.3| Oryctolagus cuniculus, clone Oryctolagus cuniculu... 42 2.3
12gb|AY018040.1| Oryza sativa microsatellite MRG0365 containing (A... 40 9.0
13ref|XM_883113.1| PREDICTED: Bos taurus similar to H3 histone, fa... 40 9.0
14ref|XM_883110.1| PREDICTED: Bos taurus similar to H3 histone, fa... 40 9.0
15ref|XM_883106.1| PREDICTED: Bos taurus similar to H3 histone, fa... 40 9.0
16ref|XM_883102.1| PREDICTED: Bos taurus similar to H3 histone, fa... 40 9.0
17ref|XM_870003.1| PREDICTED: Bos taurus similar to H3 histone, fa... 40 9.0
18ref|XM_421916.1| PREDICTED: Gallus gallus similar to 130kDa-Ins(... 40 9.0
19gb|AC133906.9| Mus musculus chromosome 14, clone RP24-230P12, co... 40 9.0
20gb|AC133945.2| Mus musculus chromosome 18 clone RP24-146N1, comp... 40 9.0
21emb|BX005408.12| Zebrafish DNA sequence from clone DKEY-156H23 i... 40 9.0
22gb|AC092383.4| Homo sapiens chromosome 16 clone RP11-787D11, com... 40 9.0
23emb|AL928552.7| Mouse DNA sequence from clone RP23-30I12 on chro... 40 9.0
24emb|AL845294.3| Mouse DNA sequence from clone RP23-285N19 on chr... 40 9.0
25gb|AC154689.2| Mus musculus BAC clone RP24-329P8 from chromosome... 40 9.0
26gb|AC093805.3| Homo sapiens BAC clone RP11-326O9 from 4, complet... 40 9.0
27dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
28gb|AC009132.9| Homo sapiens chromosome 16 clone RP11-503F24, com... 40 9.0
29dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
30gb|AC011602.17| Homo sapiens 12 BAC RP11-362A1 (Roswell Park Can... 40 9.0
31emb|AL357054.14| Human DNA sequence from clone RP11-532F6 on chr... 40 9.0
32emb|AL627409.9| Mouse DNA sequence from clone RP23-430L23 on chr... 40 9.0
33dbj|AP005139.2| Homo sapiens genomic DNA, chromosome 18p clone:R... 40 9.0

>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19
              map E30331S, complete sequence
          Length = 164820

 Score =  464 bits (234), Expect = e-127
 Identities = 480/562 (85%)
 Strand = Plus / Plus

                                                                          
Query: 99     agcttttatttccaatcaagcatgtctaagagccacaagatctcaggctcggaccttgcc 158
              ||||| ||||||||||||||||||||||||||||| |  || |||| ||| |||||||| 
Sbjct: 137969 agcttctatttccaatcaagcatgtctaagagccaaagaatttcagtctccgaccttgct 138028

                                                                          
Query: 159    gcatcacaaaaatctagttcaataccaaatacctctatagtgtttgttcctttatacagg 218
              ||||||||||| ||||| || ||||||||||| || ||   |||||||||||| ||||||
Sbjct: 138029 gcatcacaaaagtctagctctataccaaatacttcgatgacgtttgttcctttgtacagg 138088

                                                                          
Query: 219    aaaagcaaggacatccacgcccggatgtctgatatgaaagggtgtctgggcgaaaacctg 278
              |||||||| |||||||| || |||||||||||||| ||||||| ||| || ||||||  |
Sbjct: 138089 aaaagcaaagacatccatgctcggatgtctgatataaaagggtatcttggtgaaaactgg 138148

                                                                          
Query: 279    agatattcatatgccaatgctcgtgctgcattgctgtcaatgtaatcaaaacttgacgta 338
              |||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||| ||
Sbjct: 138149 agatattcatatgccaatgcccgtgctgcgttgctgtcgatgtaatcaaaagttgactta 138208

                                                                          
Query: 339    ttaattatgcaactcatcttgttggtgtccttacggtgagcaagaacagacacggtgatg 398
              ||||| | ||||  |||||| || || ||||| ||||| |||||||||||||| ||||||
Sbjct: 138209 ttaatgacgcaagccatcttctttgtatcctttcggtgggcaagaacagacacagtgatg 138268

                                                                          
Query: 399    gatggccccatagggactgtcagcttgggttcgacttccatcatcaaaatgcagtctgcg 458
              |||||||||||||  | |  |||||||||||| || |||||||||| ||||||||| |  
Sbjct: 138269 gatggccccatagttatttccagcttgggttcaacctccatcatcagaatgcagtcagga 138328

                                                                          
Query: 459    gcattcaggtgtgcaacaagtacatctggtattccgctgggtgtgttctgtagacctgct 518
              ||| |||  ||||| ||||||||||| || || || |  ||||| ||||| |||||| ||
Sbjct: 138329 gcagtcaaatgtgctacaagtacatccggaatgccacaaggtgtattctgcagacctcct 138388

                                                                          
Query: 519    ctaagaatgcagcctgaaactgcttgagagaagatcaatgatccctcaagccacatgtca 578
              | ||| |||||||||||||| |||||||||||||| | |||||| |||||||||||||||
Sbjct: 138389 cgaaggatgcagcctgaaacagcttgagagaagatgagtgatccgtcaagccacatgtca 138448

                                                                          
Query: 579    atgtaaaacaccagatccttgaaagtgagcttaggtacaggaagatgcactgtcttccgt 638
              ||||||||||| ||||||| ||| |||||||| ||||||||||| |||  || | |||||
Sbjct: 138449 atgtaaaacacaagatcctcgaatgtgagctttggtacaggaaggtgctgtggcgtccgt 138508

                                    
Query: 639    ggcttggagaatgttaaataga 660
              || |||||||| ||||||||||
Sbjct: 138509 ggtttggagaaggttaaataga 138530



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 50     catgaacattctttacatgcctcaaa 75
              |||||||||||||||||||| |||||
Sbjct: 137921 catgaacattctttacatgcgtcaaa 137946



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  464 bits (234), Expect = e-127
 Identities = 480/562 (85%)
 Strand = Plus / Minus

                                                                            
Query: 99       agcttttatttccaatcaagcatgtctaagagccacaagatctcaggctcggaccttgcc 158
                ||||| ||||||||||||||||||||||||||||| |  || |||| ||| |||||||| 
Sbjct: 17425774 agcttctatttccaatcaagcatgtctaagagccaaagaatttcagtctccgaccttgct 17425715

                                                                            
Query: 159      gcatcacaaaaatctagttcaataccaaatacctctatagtgtttgttcctttatacagg 218
                ||||||||||| ||||| || ||||||||||| || ||   |||||||||||| ||||||
Sbjct: 17425714 gcatcacaaaagtctagctctataccaaatacttcgatgacgtttgttcctttgtacagg 17425655

                                                                            
Query: 219      aaaagcaaggacatccacgcccggatgtctgatatgaaagggtgtctgggcgaaaacctg 278
                |||||||| |||||||| || |||||||||||||| ||||||| ||| || ||||||  |
Sbjct: 17425654 aaaagcaaagacatccatgctcggatgtctgatataaaagggtatcttggtgaaaactgg 17425595

                                                                            
Query: 279      agatattcatatgccaatgctcgtgctgcattgctgtcaatgtaatcaaaacttgacgta 338
                |||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||| ||
Sbjct: 17425594 agatattcatatgccaatgcccgtgctgcgttgctgtcgatgtaatcaaaagttgactta 17425535

                                                                            
Query: 339      ttaattatgcaactcatcttgttggtgtccttacggtgagcaagaacagacacggtgatg 398
                ||||| | ||||  |||||| || || ||||| ||||| |||||||||||||| ||||||
Sbjct: 17425534 ttaatgacgcaagccatcttctttgtatcctttcggtgggcaagaacagacacagtgatg 17425475

                                                                            
Query: 399      gatggccccatagggactgtcagcttgggttcgacttccatcatcaaaatgcagtctgcg 458
                |||||||||||||  | |  |||||||||||| || |||||||||| ||||||||| |  
Sbjct: 17425474 gatggccccatagttatttccagcttgggttcaacctccatcatcagaatgcagtcagga 17425415

                                                                            
Query: 459      gcattcaggtgtgcaacaagtacatctggtattccgctgggtgtgttctgtagacctgct 518
                ||| |||  ||||| ||||||||||| || || || |  ||||| ||||| |||||| ||
Sbjct: 17425414 gcagtcaaatgtgctacaagtacatccggaatgccacaaggtgtattctgcagacctcct 17425355

                                                                            
Query: 519      ctaagaatgcagcctgaaactgcttgagagaagatcaatgatccctcaagccacatgtca 578
                | ||| |||||||||||||| |||||||||||||| | |||||| |||||||||||||||
Sbjct: 17425354 cgaaggatgcagcctgaaacagcttgagagaagatgagtgatccgtcaagccacatgtca 17425295

                                                                            
Query: 579      atgtaaaacaccagatccttgaaagtgagcttaggtacaggaagatgcactgtcttccgt 638
                ||||||||||| ||||||| ||| |||||||| ||||||||||| |||  || | |||||
Sbjct: 17425294 atgtaaaacacaagatcctcgaatgtgagctttggtacaggaaggtgctgtggcgtccgt 17425235

                                      
Query: 639      ggcttggagaatgttaaataga 660
                || |||||||| ||||||||||
Sbjct: 17425234 ggtttggagaaggttaaataga 17425213



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 50       catgaacattctttacatgcctcaaa 75
                |||||||||||||||||||| |||||
Sbjct: 17425822 catgaacattctttacatgcgtcaaa 17425797



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  464 bits (234), Expect = e-127
 Identities = 480/562 (85%)
 Strand = Plus / Minus

                                                                            
Query: 99       agcttttatttccaatcaagcatgtctaagagccacaagatctcaggctcggaccttgcc 158
                ||||| ||||||||||||||||||||||||||||| |  || |||| ||| |||||||| 
Sbjct: 17419315 agcttctatttccaatcaagcatgtctaagagccaaagaatttcagtctccgaccttgct 17419256

                                                                            
Query: 159      gcatcacaaaaatctagttcaataccaaatacctctatagtgtttgttcctttatacagg 218
                ||||||||||| ||||| || ||||||||||| || ||   |||||||||||| ||||||
Sbjct: 17419255 gcatcacaaaagtctagctctataccaaatacttcgatgacgtttgttcctttgtacagg 17419196

                                                                            
Query: 219      aaaagcaaggacatccacgcccggatgtctgatatgaaagggtgtctgggcgaaaacctg 278
                |||||||| |||||||| || |||||||||||||| ||||||| ||| || ||||||  |
Sbjct: 17419195 aaaagcaaagacatccatgctcggatgtctgatataaaagggtatcttggtgaaaactgg 17419136

                                                                            
Query: 279      agatattcatatgccaatgctcgtgctgcattgctgtcaatgtaatcaaaacttgacgta 338
                |||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||| ||
Sbjct: 17419135 agatattcatatgccaatgcccgtgctgcgttgctgtcgatgtaatcaaaagttgactta 17419076

                                                                            
Query: 339      ttaattatgcaactcatcttgttggtgtccttacggtgagcaagaacagacacggtgatg 398
                ||||| | ||||  |||||| || || ||||| ||||| |||||||||||||| ||||||
Sbjct: 17419075 ttaatgacgcaagccatcttctttgtatcctttcggtgggcaagaacagacacagtgatg 17419016

                                                                            
Query: 399      gatggccccatagggactgtcagcttgggttcgacttccatcatcaaaatgcagtctgcg 458
                |||||||||||||  | |  |||||||||||| || |||||||||| ||||||||| |  
Sbjct: 17419015 gatggccccatagttatttccagcttgggttcaacctccatcatcagaatgcagtcagga 17418956

                                                                            
Query: 459      gcattcaggtgtgcaacaagtacatctggtattccgctgggtgtgttctgtagacctgct 518
                ||| |||  ||||| ||||||||||| || || || |  ||||| ||||| |||||| ||
Sbjct: 17418955 gcagtcaaatgtgctacaagtacatccggaatgccacaaggtgtattctgcagacctcct 17418896

                                                                            
Query: 519      ctaagaatgcagcctgaaactgcttgagagaagatcaatgatccctcaagccacatgtca 578
                | ||| |||||||||||||| |||||||||||||| | |||||| |||||||||||||||
Sbjct: 17418895 cgaaggatgcagcctgaaacagcttgagagaagatgagtgatccgtcaagccacatgtca 17418836

                                                                            
Query: 579      atgtaaaacaccagatccttgaaagtgagcttaggtacaggaagatgcactgtcttccgt 638
                ||||||||||| ||||||| ||| |||||||| ||||||||||| |||  || | |||||
Sbjct: 17418835 atgtaaaacacaagatcctcgaatgtgagctttggtacaggaaggtgctgtggcgtccgt 17418776

                                      
Query: 639      ggcttggagaatgttaaataga 660
                || |||||||| ||||||||||
Sbjct: 17418775 ggtttggagaaggttaaataga 17418754



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 50       catgaacattctttacatgcctcaaa 75
                |||||||||||||||||||| |||||
Sbjct: 17419363 catgaacattctttacatgcgtcaaa 17419338



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>dbj|AK069736.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031J08, full
            insert sequence
          Length = 1224

 Score =  464 bits (234), Expect = e-127
 Identities = 480/562 (85%)
 Strand = Plus / Minus

                                                                        
Query: 99   agcttttatttccaatcaagcatgtctaagagccacaagatctcaggctcggaccttgcc 158
            ||||| ||||||||||||||||||||||||||||| |  || |||| ||| |||||||| 
Sbjct: 1087 agcttctatttccaatcaagcatgtctaagagccaaagaatttcagtctccgaccttgct 1028

                                                                        
Query: 159  gcatcacaaaaatctagttcaataccaaatacctctatagtgtttgttcctttatacagg 218
            ||||||||||| ||||| || ||||||||||| || ||   |||||||||||| ||||||
Sbjct: 1027 gcatcacaaaagtctagctctataccaaatacttcgatgacgtttgttcctttgtacagg 968

                                                                        
Query: 219  aaaagcaaggacatccacgcccggatgtctgatatgaaagggtgtctgggcgaaaacctg 278
            |||||||| |||||||| || |||||||||||||| ||||||| ||| || ||||||  |
Sbjct: 967  aaaagcaaagacatccatgctcggatgtctgatataaaagggtatcttggtgaaaactgg 908

                                                                        
Query: 279  agatattcatatgccaatgctcgtgctgcattgctgtcaatgtaatcaaaacttgacgta 338
            |||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||| ||
Sbjct: 907  agatattcatatgccaatgcccgtgctgcgttgctgtcgatgtaatcaaaagttgactta 848

                                                                        
Query: 339  ttaattatgcaactcatcttgttggtgtccttacggtgagcaagaacagacacggtgatg 398
            ||||| | ||||  |||||| || || ||||| ||||| |||||||||||||| ||||||
Sbjct: 847  ttaatgacgcaagccatcttctttgtatcctttcggtgggcaagaacagacacagtgatg 788

                                                                        
Query: 399  gatggccccatagggactgtcagcttgggttcgacttccatcatcaaaatgcagtctgcg 458
            |||||||||||||  | |  |||||||||||| || |||||||||| ||||||||| |  
Sbjct: 787  gatggccccatagttatttccagcttgggttcaacctccatcatcagaatgcagtcagga 728

                                                                        
Query: 459  gcattcaggtgtgcaacaagtacatctggtattccgctgggtgtgttctgtagacctgct 518
            ||| |||  ||||| ||||||||||| || || || |  ||||| ||||| |||||| ||
Sbjct: 727  gcagtcaaatgtgctacaagtacatccggaatgccacaaggtgtattctgcagacctcct 668

                                                                        
Query: 519  ctaagaatgcagcctgaaactgcttgagagaagatcaatgatccctcaagccacatgtca 578
            | ||| |||||||||||||| |||||||||||||| | |||||| |||||||||||||||
Sbjct: 667  cgaaggatgcagcctgaaacagcttgagagaagatgagtgatccgtcaagccacatgtca 608

                                                                        
Query: 579  atgtaaaacaccagatccttgaaagtgagcttaggtacaggaagatgcactgtcttccgt 638
            ||||||||||| ||||||| ||| |||||||| ||||||||||| |||  || | |||||
Sbjct: 607  atgtaaaacacaagatcctcgaatgtgagctttggtacaggaaggtgctgtggcgtccgt 548

                                  
Query: 639  ggcttggagaatgttaaataga 660
            || |||||||| ||||||||||
Sbjct: 547  ggtttggagaaggttaaataga 526



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 50   catgaacattctttacatgcctcaaa 75
            |||||||||||||||||||| |||||
Sbjct: 1135 catgaacattctttacatgcgtcaaa 1110



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>ref|XM_468735.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 753

 Score =  460 bits (232), Expect = e-126
 Identities = 475/556 (85%)
 Strand = Plus / Minus

                                                                       
Query: 105 tatttccaatcaagcatgtctaagagccacaagatctcaggctcggaccttgccgcatca 164
           ||||||||||||||||||||||||||||| |  || |||| ||| |||||||| ||||||
Sbjct: 752 tatttccaatcaagcatgtctaagagccaaagaatttcagtctccgaccttgctgcatca 693

                                                                       
Query: 165 caaaaatctagttcaataccaaatacctctatagtgtttgttcctttatacaggaaaagc 224
           ||||| ||||| || ||||||||||| || ||   |||||||||||| ||||||||||||
Sbjct: 692 caaaagtctagctctataccaaatacttcgatgacgtttgttcctttgtacaggaaaagc 633

                                                                       
Query: 225 aaggacatccacgcccggatgtctgatatgaaagggtgtctgggcgaaaacctgagatat 284
           || |||||||| || |||||||||||||| ||||||| ||| || ||||||  |||||||
Sbjct: 632 aaagacatccatgctcggatgtctgatataaaagggtatcttggtgaaaactggagatat 573

                                                                       
Query: 285 tcatatgccaatgctcgtgctgcattgctgtcaatgtaatcaaaacttgacgtattaatt 344
           |||||||||||||| |||||||| |||||||| |||||||||||| ||||| ||||||| 
Sbjct: 572 tcatatgccaatgcccgtgctgcgttgctgtcgatgtaatcaaaagttgacttattaatg 513

                                                                       
Query: 345 atgcaactcatcttgttggtgtccttacggtgagcaagaacagacacggtgatggatggc 404
           | ||||  |||||| || || ||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 512 acgcaagccatcttctttgtatcctttcggtgggcaagaacagacacagtgatggatggc 453

                                                                       
Query: 405 cccatagggactgtcagcttgggttcgacttccatcatcaaaatgcagtctgcggcattc 464
           |||||||  | |  |||||||||||| || |||||||||| ||||||||| |  ||| ||
Sbjct: 452 cccatagttatttccagcttgggttcaacctccatcatcagaatgcagtcaggagcagtc 393

                                                                       
Query: 465 aggtgtgcaacaagtacatctggtattccgctgggtgtgttctgtagacctgctctaaga 524
           |  ||||| ||||||||||| || || || |  ||||| ||||| |||||| ||| ||| 
Sbjct: 392 aaatgtgctacaagtacatccggaatgccacaaggtgtattctgcagacctcctcgaagg 333

                                                                       
Query: 525 atgcagcctgaaactgcttgagagaagatcaatgatccctcaagccacatgtcaatgtaa 584
           |||||||||||||| |||||||||||||| | |||||| |||||||||||||||||||||
Sbjct: 332 atgcagcctgaaacagcttgagagaagatgagtgatccgtcaagccacatgtcaatgtaa 273

                                                                       
Query: 585 aacaccagatccttgaaagtgagcttaggtacaggaagatgcactgtcttccgtggcttg 644
           ||||| ||||||| ||| |||||||| ||||||||||| |||  || | ||||||| |||
Sbjct: 272 aacacaagatcctcgaatgtgagctttggtacaggaaggtgctgtggcgtccgtggtttg 213

                           
Query: 645 gagaatgttaaataga 660
           ||||| ||||||||||
Sbjct: 212 gagaaggttaaataga 197



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>gb|AF288092.1| Naegleria gruberi mitochondrial DNA, complete genome
          Length = 49843

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 6     taaagctatatatttagtacta 27
             ||||||||||||||||||||||
Sbjct: 40302 taaagctatatatttagtacta 40323



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>gb|AC116318.7| Mus musculus BAC clone RP23-80L14 from chromosome 1, complete sequence
          Length = 235490

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 205    ttcctttatacaggaaaagca 225
              |||||||||||||||||||||
Sbjct: 172690 ttcctttatacaggaaaagca 172710



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>emb|AL020994.1|HS929C8 Human DNA sequence from clone CTA-929C8 on chromosome 22q12.1-12.3,
             complete sequence
          Length = 139190

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 520   taagaatgcagcctgaaactg 540
             |||||||||||||||||||||
Sbjct: 60649 taagaatgcagcctgaaactg 60629



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>emb|CR936633.1| Homo sapiens mRNA; cDNA DKFZp781F1219 (from clone DKFZp781F1219)
          Length = 5069

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 520  taagaatgcagcctgaaactg 540
            |||||||||||||||||||||
Sbjct: 2623 taagaatgcagcctgaaactg 2603



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>emb|CR627208.1| Homo sapiens mRNA; cDNA DKFZp781G1319 (from clone DKFZp781G1319)
          Length = 5069

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 520  taagaatgcagcctgaaactg 540
            |||||||||||||||||||||
Sbjct: 2623 taagaatgcagcctgaaactg 2603



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>gb|AC167717.3| Oryctolagus cuniculus, clone Oryctolagus cuniculus-16721157J10,
            complete sequence
          Length = 33881

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 159  gcatcacaaaaatctagttca 179
            |||||||||||||||||||||
Sbjct: 4442 gcatcacaaaaatctagttca 4462



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>gb|AY018040.1| Oryza sativa microsatellite MRG0365 containing (AG)X26, genomic
           sequence
          Length = 252

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 608 cttaggtacaggaagatgca 627
           ||||||||||||||||||||
Sbjct: 17  cttaggtacaggaagatgca 36



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>ref|XM_883113.1| PREDICTED: Bos taurus similar to H3 histone, family 3B, transcript
            variant 5 (LOC617051), mRNA
          Length = 2868

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 569  ccacatgtcaatgtaaaaca 588
            ||||||||||||||||||||
Sbjct: 1211 ccacatgtcaatgtaaaaca 1192



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>ref|XM_883110.1| PREDICTED: Bos taurus similar to H3 histone, family 3B, transcript
            variant 4 (LOC617051), mRNA
          Length = 2778

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 569  ccacatgtcaatgtaaaaca 588
            ||||||||||||||||||||
Sbjct: 1121 ccacatgtcaatgtaaaaca 1102



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>ref|XM_883106.1| PREDICTED: Bos taurus similar to H3 histone, family 3B, transcript
            variant 3 (LOC617051), mRNA
          Length = 1690

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 569  ccacatgtcaatgtaaaaca 588
            ||||||||||||||||||||
Sbjct: 1121 ccacatgtcaatgtaaaaca 1102



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>ref|XM_883102.1| PREDICTED: Bos taurus similar to H3 histone, family 3B, transcript
            variant 2 (LOC617051), mRNA
          Length = 2680

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 569  ccacatgtcaatgtaaaaca 588
            ||||||||||||||||||||
Sbjct: 1023 ccacatgtcaatgtaaaaca 1004



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>ref|XM_870003.1| PREDICTED: Bos taurus similar to H3 histone, family 3B, transcript
           variant 1 (LOC617051), mRNA
          Length = 841

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 569 ccacatgtcaatgtaaaaca 588
           ||||||||||||||||||||
Sbjct: 841 ccacatgtcaatgtaaaaca 822



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>ref|XM_421916.1| PREDICTED: Gallus gallus similar to 130kDa-Ins(1,4,5)P3 binding
            protein (LOC424060), partial mRNA
          Length = 3264

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 160  catcacaaaaatctagttcaatac 183
            ||||||||| ||||||||||||||
Sbjct: 1321 catcacaaacatctagttcaatac 1298



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>gb|AC133906.9| Mus musculus chromosome 14, clone RP24-230P12, complete sequence
          Length = 176220

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 101  cttttatttccaatcaagca 120
            ||||||||||||||||||||
Sbjct: 7558 cttttatttccaatcaagca 7577



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>gb|AC133945.2| Mus musculus chromosome 18 clone RP24-146N1, complete sequence
          Length = 139630

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 210   ttatacaggaaaagcaaggacatc 233
             ||||||||||||||||| ||||||
Sbjct: 73866 ttatacaggaaaagcaatgacatc 73843



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>emb|BX005408.12| Zebrafish DNA sequence from clone DKEY-156H23 in linkage group 9,
              complete sequence
          Length = 210207

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      catcttaaagctatatattt 20
              ||||||||||||||||||||
Sbjct: 166995 catcttaaagctatatattt 166976



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>gb|AC092383.4| Homo sapiens chromosome 16 clone RP11-787D11, complete sequence
          Length = 179677

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 81     aaatcacaactaaaaggtagcttttatttcca 112
              |||||||| |||||| |||| |||||||||||
Sbjct: 149576 aaatcacacctaaaatgtaggttttatttcca 149545



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>emb|AL928552.7| Mouse DNA sequence from clone RP23-30I12 on chromosome 4, complete
              sequence
          Length = 206507

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 199    tgtttgttcctttatacaggaaaa 222
              ||||| ||||||||||||||||||
Sbjct: 206140 tgtttattcctttatacaggaaaa 206163



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>emb|AL845294.3| Mouse DNA sequence from clone RP23-285N19 on chromosome 4 Contains a
            ribosomal protein L9 (Rpl9) pseudogene, a cysteine-rich
            secretory protein 1 (Crisp1) pseudogene and a eukaryotic
            translation initiation factor 1A (Eif1a) pseudogene,
            complete sequence
          Length = 167418

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 199  tgtttgttcctttatacaggaaaa 222
            ||||| ||||||||||||||||||
Sbjct: 1633 tgtttattcctttatacaggaaaa 1656



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>gb|AC154689.2| Mus musculus BAC clone RP24-329P8 from chromosome 14, complete sequence
          Length = 124803

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   cttttatttccaatcaagca 120
             ||||||||||||||||||||
Sbjct: 65528 cttttatttccaatcaagca 65509



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>gb|AC093805.3| Homo sapiens BAC clone RP11-326O9 from 4, complete sequence
          Length = 165538

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    agcttttatttccaatcaag 118
             ||||||||||||||||||||
Sbjct: 55181 agcttttatttccaatcaag 55162



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 608      cttaggtacaggaagatgca 627
                ||||||||||||||||||||
Sbjct: 23737261 cttaggtacaggaagatgca 23737242



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>gb|AC009132.9| Homo sapiens chromosome 16 clone RP11-503F24, complete sequence
          Length = 216342

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 81    aaatcacaactaaaaggtagcttttatttcca 112
             |||||||| |||||| |||| |||||||||||
Sbjct: 20077 aaatcacacctaaaatgtaggttttatttcca 20046



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>dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1060_D03
          Length = 102178

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 608   cttaggtacaggaagatgca 627
             ||||||||||||||||||||
Sbjct: 81875 cttaggtacaggaagatgca 81856



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>gb|AC011602.17| Homo sapiens 12 BAC RP11-362A1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 97995

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   atgcaactcatcttgttggt 364
             ||||||||||||||||||||
Sbjct: 50810 atgcaactcatcttgttggt 50829



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>emb|AL357054.14| Human DNA sequence from clone RP11-532F6 on chromosome 6, complete
             sequence
          Length = 121656

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    aacattctttacatgcctca 73
             ||||||||||||||||||||
Sbjct: 85144 aacattctttacatgcctca 85163



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>emb|AL627409.9| Mouse DNA sequence from clone RP23-430L23 on chromosome X, complete
             sequence
          Length = 189295

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 434   ttccatcatcaaaatgcagt 453
             ||||||||||||||||||||
Sbjct: 88370 ttccatcatcaaaatgcagt 88351



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>dbj|AP005139.2| Homo sapiens genomic DNA, chromosome 18p clone:RP11-93H10, complete
              sequences
          Length = 165500

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    gttcctttatacaggaaaag 223
              ||||||||||||||||||||
Sbjct: 120847 gttcctttatacaggaaaag 120828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,850,686
Number of Sequences: 3902068
Number of extensions: 5850686
Number of successful extensions: 104801
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104641
Number of HSP's gapped (non-prelim): 155
length of query: 660
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 637
effective length of database: 17,143,297,704
effective search space: 10920280637448
effective search space used: 10920280637448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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