Clone Information

BLAST Search Result

Clone Name	rbasd19m02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_465260.1\| Oryza sativa (japonica cultivar-group), mRNA	408	e-111
2	gb\|AY104587.1\| Zea mays PCO104634 mRNA sequence	311	1e-81
3	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	250	5e-63
4	dbj\|AP004024.3\| Oryza sativa (japonica cultivar-group) genomic D...	250	5e-63
5	dbj\|AP004798.2\| Oryza sativa (japonica cultivar-group) genomic D...	250	5e-63
6	ref\|NM_124867.2\| Arabidopsis thaliana unknown protein AT5G54855 ...	117	4e-23
7	gb\|AY093718.1\| Arabidopsis thaliana AT1g27100/T7N9_16 mRNA, comp...	117	4e-23
8	gb\|AF410270.1\|AF410270 Arabidopsis thaliana unknown protein mRNA...	117	4e-23
9	dbj\|AK118946.1\| Arabidopsis thaliana At5g54855 mRNA for unknown ...	117	4e-23
10	dbj\|AB005232.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	113	7e-22
11	gb\|AY088675.1\| Arabidopsis thaliana clone 9159 mRNA, complete se...	109	1e-20
12	emb\|BX830033.1\|CNS0A053 Arabidopsis thaliana Full-length cDNA Co...	84	6e-13
13	gb\|AY364845.1\| Virus PhiCh1 pBgB51 capsid protein, int1, and cap...	42	2.1
14	gb\|AY364843.1\| Virus PhiCh1 pBgB5 ORF34-5, integrase, and ORF36-...	42	2.1
15	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	42	2.1
16	gb\|AF440695.1\| Virus PhiCh1, complete genome	42	2.1
17	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
18	gb\|AC134230.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	2.1
19	dbj\|AP006643.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	42	2.1
20	gb\|AC123941.3\| Mus musculus BAC clone RP23-458G24 from chromosom...	40	8.1
21	gb\|AC010295.7\| Homo sapiens chromosome 5 clone CTB-143H13, compl...	40	8.1
22	emb\|AL591202.8\| Human DNA sequence from clone RP11-262B12 on chr...	40	8.1
23	emb\|AL355805.20\| Human DNA sequence from clone RP11-29L10 on chr...	40	8.1
24	emb\|AL157829.24\| Human DNA sequence from clone RP11-305F14 on ch...	40	8.1
25	emb\|AL136181.13\| Human DNA sequence from clone RP11-35J23 on chr...	40	8.1
26	emb\|AL008634.1\|HS396D17 Human DNA sequence from clone RP3-396D17...	40	8.1
27	emb\|AL939108.1\|SCO939108 Streptomyces coelicolor A3(2) complete ...	40	8.1
28	emb\|AL773513.3\| Mouse DNA sequence from clone RP24-535M24 on chr...	40	8.1
29	gb\|AC114307.2\| Homo sapiens chromosome 5 clone RP11-195J17, comp...	40	8.1
30	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	8.1
31	gb\|AC135209.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.1
32	gb\|AC022088.5\|AC022088 Homo sapiens chromosome 5 clone CTB-110D2...	40	8.1
33	gb\|AC120182.8\| Mus musculus chromosome 1, clone RP24-501C2, comp...	40	8.1
34	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	8.1
35	gb\|AC167669.1\| Mus musculus BAC clone RP24-138L8 from chromosome...	40	8.1
36	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	8.1
37	gb\|AC008572.6\|AC008572 Homo sapiens chromosome 5 clone CTC-551A1...	40	8.1
38	gb\|AC093475.9\| Mus musculus chromosome 1, clone RP23-54K22, comp...	40	8.1
39	gb\|AC108421.8\| Mus musculus chromosome 19, clone RP23-433N7, com...	40	8.1
40	emb\|AL512361.3\|CNS07EFA Human chromosome 14 DNA sequence BAC R-3...	40	8.1

>ref|XM_465260.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 468

 Score =  408 bits (206), Expect = e-111
 Identities = 326/366 (89%)
 Strand = Plus / Minus

                                                                       
Query: 232 gttggcaggcttgtagaggaacgtcttgacgttgtgcgagctccccgactgtttgttgta 291
           ||||||||||||||||||||||||||||||| |||| ||| | || ||  | ||| ||||
Sbjct: 447 gttggcaggcttgtagaggaacgtcttgacggtgtgagagtttcctgaaggcttgctgta 388

                                                                       
Query: 292 tgtgaacttgaccccagagtgtgcatcgcccctcctggtgcaatgctggtggaagctgct 351
           ||||||||||||||||||||||| ||| |||||| | |||||||||||||| ||||||||
Sbjct: 387 tgtgaacttgaccccagagtgtgtatcacccctcttagtgcaatgctggtgaaagctgct 328

                                                                       
Query: 352 gatgggcctcgccaggcacgaatcccatcggtcgctctcaggcattgtctctgcaacgct 411
           ||||||||| |||| ||| || ||||| ||||| ||||| ||||| ||||| |||||  |
Sbjct: 327 gatgggccttgccaagcatgactcccaacggtcactctctggcatcgtctccgcaacaat 268

                                                                       
Query: 412 gtagacacccttgtagtttgtgaacgcctggtagttgatgacctcaccagatttcgtgat 471
           ||||||||||||| |||||||||| |||||||||||||| || ||||||||| |||||||
Sbjct: 267 gtagacacccttggagtttgtgaaggcctggtagttgataacttcaccagatctcgtgat 208

                                                                       
Query: 472 gcacagaacagcaacctcagcgccttcgaggacgtggtcctcggggccgatggcagagtc 531
           ||| || || |||||||| || |||||||||||||||||||||||||||||||| | |||
Sbjct: 207 gcagaggacggcaacctcggcaccttcgaggacgtggtcctcggggccgatggcggcgtc 148

                                                                       
Query: 532 cgcgcagacgtcgcagacgacgcggccgcggatctcccccgtccaagcctcggccgccgg 591
           | |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 147 cccgcagacgtcgcagacgacgtggccgcggatctcccccgtccacgcctcggccgccgg 88

                 
Query: 592 ggccgc 597
           ||||||
Sbjct: 87  ggccgc 82

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>gb|AY104587.1| Zea mays PCO104634 mRNA sequence
          Length = 903

 Score =  311 bits (157), Expect = 1e-81
 Identities = 307/357 (85%)
 Strand = Plus / Minus

                                                                       
Query: 234 tggcaggcttgtagaggaacgtcttgacgttgtgcgagctccccgactgtttgttgtatg 293
           |||| |||||||||||||| | ||||||| |||||| | |||| |||  ||||||||| |
Sbjct: 599 tggccggcttgtagaggaaaggcttgacggtgtgcgggttcccagacgatttgttgtaag 540

                                                                       
Query: 294 tgaacttgaccccagagtgtgcatcgcccctcctggtgcaatgctggtggaagctgctga 353
           ||||||| ||||||||||| ||||| |||| ||  ||||||||  | ||||||||||| |
Sbjct: 539 tgaacttcaccccagagtgagcatcaccccgccgtgtgcaatgtagatggaagctgctca 480

                                                                       
Query: 354 tgggcctcgccaggcacgaatcccatcggtcgctctcaggcattgtctctgcaacgctgt 413
           | |||||||||| |||||| ||||| | ||||||||| ||||| ||||| || ||  | |
Sbjct: 479 taggcctcgccaagcacgagtcccacctgtcgctctccggcatagtctcggcgacagtat 420

                                                                       
Query: 414 agacacccttgtagtttgtgaacgcctggtagttgatgacctcaccagatttcgtgatgc 473
           | || |||||| |||||||||| || || |||||||| |||||||||||||| |||||||
Sbjct: 419 acacgcccttggagtttgtgaaggcttgatagttgataacctcaccagattttgtgatgc 360

                                                                       
Query: 474 acagaacagcaacctcagcgccttcgaggacgtggtcctcggggccgatggcagagtccg 533
           | || ||||||||||| || ||||||||| |||||||||| ||||||||||| | |||  
Sbjct: 359 agaggacagcaacctccgcaccttcgagggcgtggtcctccgggccgatggctgcgtcgc 300

                                                                    
Query: 534 cgcagacgtcgcagacgacgcggccgcggatctcccccgtccaagcctcggccgccg 590
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cgcagacgtcgcagacgacgcggccgcggatctcccccgtccaagcctcggccgccg 243

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  250 bits (126), Expect = 5e-63
 Identities = 225/258 (87%)
 Strand = Plus / Plus

                                                                            
Query: 232      gttggcaggcttgtagaggaacgtcttgacgttgtgcgagctccccgactgtttgttgta 291
                ||||||||||||||||||||||||||||||| |||| ||| | || ||  | ||| ||||
Sbjct: 12629423 gttggcaggcttgtagaggaacgtcttgacggtgtgagagtttcctgaaggcttgctgta 12629482

                                                                            
Query: 292      tgtgaacttgaccccagagtgtgcatcgcccctcctggtgcaatgctggtggaagctgct 351
                ||||||||||||||||||||||| ||| |||||| | |||||||||||||| ||||||||
Sbjct: 12629483 tgtgaacttgaccccagagtgtgtatcacccctcttagtgcaatgctggtgaaagctgct 12629542

                                                                            
Query: 352      gatgggcctcgccaggcacgaatcccatcggtcgctctcaggcattgtctctgcaacgct 411
                ||||||||| |||| ||| || ||||| ||||| ||||| ||||| ||||| |||||  |
Sbjct: 12629543 gatgggccttgccaagcatgactcccaacggtcactctctggcatcgtctccgcaacaat 12629602

                                                                            
Query: 412      gtagacacccttgtagtttgtgaacgcctggtagttgatgacctcaccagatttcgtgat 471
                ||||||||||||| |||||||||| |||||||||||||| || ||||||||| |||||||
Sbjct: 12629603 gtagacacccttggagtttgtgaaggcctggtagttgataacttcaccagatctcgtgat 12629662

                                  
Query: 472      gcacagaacagcaacctc 489
                ||| || || ||||||||
Sbjct: 12629663 gcagaggacggcaacctc 12629680



 Score =  167 bits (84), Expect = 5e-38
 Identities = 99/104 (95%)
 Strand = Plus / Plus

                                                                            
Query: 494      ccttcgaggacgtggtcctcggggccgatggcagagtccgcgcagacgtcgcagacgacg 553
                |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||
Sbjct: 12632346 ccttcgaggacgtggtcctcggggccgatggcggcgtccccgcagacgtcgcagacgacg 12632405

                                                            
Query: 554      cggccgcggatctcccccgtccaagcctcggccgccggggccgc 597
                 |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 12632406 tggccgcggatctcccccgtccacgcctcggccgccggggccgc 12632449

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>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1134_B09
          Length = 105247

 Score =  250 bits (126), Expect = 5e-63
 Identities = 225/258 (87%)
 Strand = Plus / Plus

                                                                         
Query: 232   gttggcaggcttgtagaggaacgtcttgacgttgtgcgagctccccgactgtttgttgta 291
             ||||||||||||||||||||||||||||||| |||| ||| | || ||  | ||| ||||
Sbjct: 26482 gttggcaggcttgtagaggaacgtcttgacggtgtgagagtttcctgaaggcttgctgta 26541

                                                                         
Query: 292   tgtgaacttgaccccagagtgtgcatcgcccctcctggtgcaatgctggtggaagctgct 351
             ||||||||||||||||||||||| ||| |||||| | |||||||||||||| ||||||||
Sbjct: 26542 tgtgaacttgaccccagagtgtgtatcacccctcttagtgcaatgctggtgaaagctgct 26601

                                                                         
Query: 352   gatgggcctcgccaggcacgaatcccatcggtcgctctcaggcattgtctctgcaacgct 411
             ||||||||| |||| ||| || ||||| ||||| ||||| ||||| ||||| |||||  |
Sbjct: 26602 gatgggccttgccaagcatgactcccaacggtcactctctggcatcgtctccgcaacaat 26661

                                                                         
Query: 412   gtagacacccttgtagtttgtgaacgcctggtagttgatgacctcaccagatttcgtgat 471
             ||||||||||||| |||||||||| |||||||||||||| || ||||||||| |||||||
Sbjct: 26662 gtagacacccttggagtttgtgaaggcctggtagttgataacttcaccagatctcgtgat 26721

                               
Query: 472   gcacagaacagcaacctc 489
             ||| || || ||||||||
Sbjct: 26722 gcagaggacggcaacctc 26739



 Score =  167 bits (84), Expect = 5e-38
 Identities = 99/104 (95%)
 Strand = Plus / Plus

                                                                         
Query: 494   ccttcgaggacgtggtcctcggggccgatggcagagtccgcgcagacgtcgcagacgacg 553
             |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||
Sbjct: 29405 ccttcgaggacgtggtcctcggggccgatggcggcgtccccgcagacgtcgcagacgacg 29464

                                                         
Query: 554   cggccgcggatctcccccgtccaagcctcggccgccggggccgc 597
              |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 29465 tggccgcggatctcccccgtccacgcctcggccgccggggccgc 29508

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>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0572D06
          Length = 148920

 Score =  250 bits (126), Expect = 5e-63
 Identities = 225/258 (87%)
 Strand = Plus / Plus

                                                                          
Query: 232    gttggcaggcttgtagaggaacgtcttgacgttgtgcgagctccccgactgtttgttgta 291
              ||||||||||||||||||||||||||||||| |||| ||| | || ||  | ||| ||||
Sbjct: 133956 gttggcaggcttgtagaggaacgtcttgacggtgtgagagtttcctgaaggcttgctgta 134015

                                                                          
Query: 292    tgtgaacttgaccccagagtgtgcatcgcccctcctggtgcaatgctggtggaagctgct 351
              ||||||||||||||||||||||| ||| |||||| | |||||||||||||| ||||||||
Sbjct: 134016 tgtgaacttgaccccagagtgtgtatcacccctcttagtgcaatgctggtgaaagctgct 134075

                                                                          
Query: 352    gatgggcctcgccaggcacgaatcccatcggtcgctctcaggcattgtctctgcaacgct 411
              ||||||||| |||| ||| || ||||| ||||| ||||| ||||| ||||| |||||  |
Sbjct: 134076 gatgggccttgccaagcatgactcccaacggtcactctctggcatcgtctccgcaacaat 134135

                                                                          
Query: 412    gtagacacccttgtagtttgtgaacgcctggtagttgatgacctcaccagatttcgtgat 471
              ||||||||||||| |||||||||| |||||||||||||| || ||||||||| |||||||
Sbjct: 134136 gtagacacccttggagtttgtgaaggcctggtagttgataacttcaccagatctcgtgat 134195

                                
Query: 472    gcacagaacagcaacctc 489
              ||| || || ||||||||
Sbjct: 134196 gcagaggacggcaacctc 134213



 Score =  167 bits (84), Expect = 5e-38
 Identities = 99/104 (95%)
 Strand = Plus / Plus

                                                                          
Query: 494    ccttcgaggacgtggtcctcggggccgatggcagagtccgcgcagacgtcgcagacgacg 553
              |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||
Sbjct: 136879 ccttcgaggacgtggtcctcggggccgatggcggcgtccccgcagacgtcgcagacgacg 136938

                                                          
Query: 554    cggccgcggatctcccccgtccaagcctcggccgccggggccgc 597
               |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 136939 tggccgcggatctcccccgtccacgcctcggccgccggggccgc 136982

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>ref|NM_124867.2| Arabidopsis thaliana unknown protein AT5G54855 mRNA, complete cds
          Length = 679

 Score =  117 bits (59), Expect = 4e-23
 Identities = 134/159 (84%)
 Strand = Plus / Minus

                                                                       
Query: 340 gtggaagctgctgatgggcctcgccaggcacgaatcccatcggtcgctctcaggcattgt 399
           |||||||||||||||||| || || ||||| |  ||||| || |||||||| ||||||||
Sbjct: 417 gtggaagctgctgatgggtcttgcaaggcaagcgtcccaacgttcgctctctggcattgt 358

                                                                       
Query: 400 ctctgcaacgctgtagacacccttgtagtttgtgaacgcctggtagttgatgacctcacc 459
           |||||||||  |||||||||| ||  |||||||||| || |||||||| |  || || ||
Sbjct: 357 ctctgcaactgtgtagacaccttttgagtttgtgaaagcttggtagttcacaacttctcc 298

                                                  
Query: 460 agatttcgtgatgcacagaacagcaacctcagcgccttc 498
           |||||| || ||||||||||| ||||||||||| |||||
Sbjct: 297 agatttggttatgcacagaaccgcaacctcagctccttc 259

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>gb|AY093718.1| Arabidopsis thaliana AT1g27100/T7N9_16 mRNA, complete cds
          Length = 441

 Score =  117 bits (59), Expect = 4e-23
 Identities = 134/159 (84%)
 Strand = Plus / Minus

                                                                       
Query: 340 gtggaagctgctgatgggcctcgccaggcacgaatcccatcggtcgctctcaggcattgt 399
           |||||||||||||||||| || || ||||| |  ||||| || |||||||| ||||||||
Sbjct: 315 gtggaagctgctgatgggtcttgcaaggcaagcgtcccaacgttcgctctctggcattgt 256

                                                                       
Query: 400 ctctgcaacgctgtagacacccttgtagtttgtgaacgcctggtagttgatgacctcacc 459
           |||||||||  |||||||||| ||  |||||||||| || |||||||| |  || || ||
Sbjct: 255 ctctgcaactgtgtagacaccttttgagtttgtgaaagcttggtagttcacaacttctcc 196

                                                  
Query: 460 agatttcgtgatgcacagaacagcaacctcagcgccttc 498
           |||||| || ||||||||||| ||||||||||| |||||
Sbjct: 195 agatttggttatgcacagaaccgcaacctcagctccttc 157

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>gb|AF410270.1|AF410270 Arabidopsis thaliana unknown protein mRNA, complete cds
          Length = 636

 Score =  117 bits (59), Expect = 4e-23
 Identities = 134/159 (84%)
 Strand = Plus / Minus

                                                                       
Query: 340 gtggaagctgctgatgggcctcgccaggcacgaatcccatcggtcgctctcaggcattgt 399
           |||||||||||||||||| || || ||||| |  ||||| || |||||||| ||||||||
Sbjct: 374 gtggaagctgctgatgggtcttgcaaggcaagcgtcccaacgttcgctctctggcattgt 315

                                                                       
Query: 400 ctctgcaacgctgtagacacccttgtagtttgtgaacgcctggtagttgatgacctcacc 459
           |||||||||  |||||||||| ||  |||||||||| || |||||||| |  || || ||
Sbjct: 314 ctctgcaactgtgtagacaccttttgagtttgtgaaagcttggtagttcacaacttctcc 255

                                                  
Query: 460 agatttcgtgatgcacagaacagcaacctcagcgccttc 498
           |||||| || ||||||||||| ||||||||||| |||||
Sbjct: 254 agatttggttatgcacagaaccgcaacctcagctccttc 216

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>dbj|AK118946.1| Arabidopsis thaliana At5g54855 mRNA for unknown protein, complete
           cds, clone: RAFL21-28-L11
          Length = 635

 Score =  117 bits (59), Expect = 4e-23
 Identities = 134/159 (84%)
 Strand = Plus / Minus

                                                                       
Query: 340 gtggaagctgctgatgggcctcgccaggcacgaatcccatcggtcgctctcaggcattgt 399
           |||||||||||||||||| || || ||||| |  ||||| || |||||||| ||||||||
Sbjct: 387 gtggaagctgctgatgggtcttgcaaggcaagcgtcccaacgttcgctctctggcattgt 328

                                                                       
Query: 400 ctctgcaacgctgtagacacccttgtagtttgtgaacgcctggtagttgatgacctcacc 459
           |||||||||  |||||||||| ||  |||||||||| || |||||||| |  || || ||
Sbjct: 327 ctctgcaactgtgtagacaccttttgagtttgtgaaagcttggtagttcacaacttctcc 268

                                                  
Query: 460 agatttcgtgatgcacagaacagcaacctcagcgccttc 498
           |||||| || ||||||||||| ||||||||||| |||||
Sbjct: 267 agatttggttatgcacagaaccgcaacctcagctccttc 229

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>dbj|AB005232.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBG8
          Length = 80315

 Score =  113 bits (57), Expect = 7e-22
 Identities = 129/153 (84%)
 Strand = Plus / Minus

                                                                         
Query: 340   gtggaagctgctgatgggcctcgccaggcacgaatcccatcggtcgctctcaggcattgt 399
             |||||||||||||||||| || || ||||| |  ||||| || |||||||| ||||||||
Sbjct: 43128 gtggaagctgctgatgggtcttgcaaggcaagcgtcccaacgttcgctctctggcattgt 43069

                                                                         
Query: 400   ctctgcaacgctgtagacacccttgtagtttgtgaacgcctggtagttgatgacctcacc 459
             |||||||||  |||||||||| ||  |||||||||| || |||||||| |  || || ||
Sbjct: 43068 ctctgcaactgtgtagacaccttttgagtttgtgaaagcttggtagttcacaacttctcc 43009

                                              
Query: 460   agatttcgtgatgcacagaacagcaacctcagc 492
             |||||| || ||||||||||| |||||||||||
Sbjct: 43008 agatttggttatgcacagaaccgcaacctcagc 42976

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>gb|AY088675.1| Arabidopsis thaliana clone 9159 mRNA, complete sequence
          Length = 661

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Minus

                                                                       
Query: 340 gtggaagctgctgatgggcctcgccaggcacgaatcccatcggtcgctctcaggcattgt 399
           |||||||||||||||||| || || ||||| |  ||||| || |||||||| ||||||||
Sbjct: 417 gtggaagctgctgatgggtcttgcaaggcaagcgtcccaacgttcgctctctggcattgt 358

                                                                       
Query: 400 ctctgcaacgctgtagacacccttgtagtttgtgaacgcctggtagttgatgacctcacc 459
           |||||||||  |||||||||| ||  |||| ||||| || |||||||| |  || || ||
Sbjct: 357 ctctgcaactgtgtagacaccttttgagttagtgaaagcttggtagttcacaacttctcc 298

                                                  
Query: 460 agatttcgtgatgcacagaacagcaacctcagcgccttc 498
           |||||| || ||||||||||| ||||||||||| |||||
Sbjct: 297 agatttggttatgcacagaaccgcaacctcagctccttc 259

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>emb|BX830033.1|CNS0A053 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB54ZF04 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1507

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 123/150 (82%)
 Strand = Plus / Minus

                                                                        
Query: 343  gaagctgctgatgggcctcgccaggcacgaatcccatcggtcgctctcaggcattgtctc 402
            ||||||||||||||| || || ||| | |  ||||| || |||||||| |||||||||||
Sbjct: 1283 gaagctgctgatgggtcttgcaagggaagcgtcccaacgttcgctctctggcattgtctc 1224

                                                                        
Query: 403  tgcaacgctgtagacacccttgtagtttgtgaacgcctggtagttgatgacctcaccaga 462
            ||||||  | |||||||| ||  ||||||| || || |||||||| |  || || |||||
Sbjct: 1223 tgcaactgtttagacaccttttgagtttgtaaaagcttggtagttcacaacttctccaga 1164

                                          
Query: 463  tttcgtgatgcacagaacagcaacctcagc 492
            ||| || ||||||||||| |||||||||||
Sbjct: 1163 tttggttatgcacagaaccgcaacctcagc 1134

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>gb|AY364845.1| Virus PhiCh1 pBgB51 capsid protein, int1, and capsid protein genes,
            complete cds
          Length = 5995

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 541  gtcgcagacgacgcggccgcg 561
            |||||||||||||||||||||
Sbjct: 5742 gtcgcagacgacgcggccgcg 5722

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>gb|AY364843.1| Virus PhiCh1 pBgB5 ORF34-5, integrase, and ORF36-5 genes, complete
            cds
          Length = 5995

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 541  gtcgcagacgacgcggccgcg 561
            |||||||||||||||||||||
Sbjct: 5742 gtcgcagacgacgcggccgcg 5722

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 533      gcgcagacgtcgcagacgacgcggc 557
                ||||||||| |||||||||||||||
Sbjct: 11359237 gcgcagacggcgcagacgacgcggc 11359213



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 534     cgcagacgtcgcagacgacgcggc 557
               |||||||| |||||||||||||||
Sbjct: 8951904 cgcagacggcgcagacgacgcggc 8951927

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>gb|AF440695.1| Virus PhiCh1, complete genome
          Length = 58498

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 541   gtcgcagacgacgcggccgcg 561
             |||||||||||||||||||||
Sbjct: 27049 gtcgcagacgacgcggccgcg 27029

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 533      gcgcagacgtcgcagacgacgcggc 557
                ||||||||| |||||||||||||||
Sbjct: 11356000 gcgcagacggcgcagacgacgcggc 11355976



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 534     cgcagacgtcgcagacgacgcggc 557
               |||||||| |||||||||||||||
Sbjct: 8949739 cgcagacggcgcagacgacgcggc 8949762

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>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0005J15, complete sequence
          Length = 159270

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 533   gcgcagacgtcgcagacgacgcggc 557
             ||||||||| |||||||||||||||
Sbjct: 67534 gcgcagacggcgcagacgacgcggc 67510

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>dbj|AP006643.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT34A19, TM0249,
             complete sequence
          Length = 111706

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     tacatatttattgattatatc 26
             |||||||||||||||||||||
Sbjct: 94353 tacatatttattgattatatc 94373

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>gb|AC123941.3| Mus musculus BAC clone RP23-458G24 from chromosome 19, complete sequence
          Length = 182733

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 2      tttgtacatatttattgattatat 25
              |||| |||||||||||||||||||
Sbjct: 120418 tttgaacatatttattgattatat 120395

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>gb|AC010295.7| Homo sapiens chromosome 5 clone CTB-143H13, complete sequence
          Length = 108051

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    tattatagtgatttacaata 63
             ||||||||||||||||||||
Sbjct: 68389 tattatagtgatttacaata 68370

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>emb|AL591202.8| Human DNA sequence from clone RP11-262B12 on chromosome X, complete
             sequence
          Length = 92817

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     tgtacatatttattgattat 23
             ||||||||||||||||||||
Sbjct: 10780 tgtacatatttattgattat 10799

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>emb|AL355805.20| Human DNA sequence from clone RP11-29L10 on chromosome Xq21.1-21.33
             Contains a ribosomal protein L6 (RPL6) pseudogene,
             complete sequence
          Length = 76507

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     tacatatttattgattatat 25
             ||||||||||||||||||||
Sbjct: 60106 tacatatttattgattatat 60087

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>emb|AL157829.24| Human DNA sequence from clone RP11-305F14 on chromosome 9 Contains part
             of the ASTN2 gene for astrotactin2 (KIAA0634), and a CpG
             island, complete sequence
          Length = 162575

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    tatttattgattatatctgt 29
             ||||||||||||||||||||
Sbjct: 15894 tatttattgattatatctgt 15913

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>emb|AL136181.13| Human DNA sequence from clone RP11-35J23 on chromosome 10 Contains two
             novel genes, the DNTT gene for terminal
             deoxynucleotidyltransferase (TDT), the TMEM10 gene for
             transmembrane protein 10 (TMP10, HTMP10) and the 3' end of
             the TLL2 gene for tolloid-like 2, complete sequence
          Length = 146909

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 9     atatttattgattatatctgtatg 32
             |||||||||||||||||| |||||
Sbjct: 60208 atatttattgattatatcagtatg 60185

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>emb|AL008634.1|HS396D17 Human DNA sequence from clone RP3-396D17 on chromosome 1p33-35.3 Contains
              EST, STS, GSS, complete sequence
          Length = 152592

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      gtacatatttattgattata 24
              ||||||||||||||||||||
Sbjct: 139293 gtacatatttattgattata 139312

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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 497    tcgaggacgtggtcctcggggccg 520
              ||||||||| ||||||||||||||
Sbjct: 335430 tcgaggacgaggtcctcggggccg 335453

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>emb|AL773513.3| Mouse DNA sequence from clone RP24-535M24 on chromosome 4 Contains the 5'
              end of the Tle1 gene for transducin-like enhancer of split
              1 homolog of Drosophila E(spl), two novel genes and a CpG
              island, complete sequence
          Length = 121919

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 10     tatttattgattatatctgtatgg 33
              |||||||| |||||||||||||||
Sbjct: 116513 tatttatttattatatctgtatgg 116536

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>gb|AC114307.2| Homo sapiens chromosome 5 clone RP11-195J17, complete sequence
          Length = 83767

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    atattatagtgatttacaat 62
             ||||||||||||||||||||
Sbjct: 28295 atattatagtgatttacaat 28314

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 486     cctcagcgccttcgaggacg 505
               ||||||||||||||||||||
Sbjct: 4215908 cctcagcgccttcgaggacg 4215927

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>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0071M09, complete sequence
          Length = 143595

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 534   cgcagacgtcgcagacgacgcggc 557
             |||||||| |||||||||||||||
Sbjct: 76765 cgcagacggcgcagacgacgcggc 76788

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>gb|AC022088.5|AC022088 Homo sapiens chromosome 5 clone CTB-110D2, complete sequence
          Length = 108906

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    tattatagtgatttacaata 63
             ||||||||||||||||||||
Sbjct: 88768 tattatagtgatttacaata 88787

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>gb|AC120182.8| Mus musculus chromosome 1, clone RP24-501C2, complete sequence
          Length = 188506

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   atgctggtggaagctgctga 353
             ||||||||||||||||||||
Sbjct: 24868 atgctggtggaagctgctga 24887

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 498     cgaggacgtggtcctcgggg 517
               ||||||||||||||||||||
Sbjct: 1743992 cgaggacgtggtcctcgggg 1743973

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>gb|AC167669.1| Mus musculus BAC clone RP24-138L8 from chromosome 13, complete sequence
          Length = 202905

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     cttcagtgactgatataggc 106
              ||||||||||||||||||||
Sbjct: 174849 cttcagtgactgatataggc 174868

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 537     agacgtcgcagacgacgcggccgcggat 564
               |||||| || ||||||||||||||||||
Sbjct: 2820213 agacgttgccgacgacgcggccgcggat 2820186

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>gb|AC008572.6|AC008572 Homo sapiens chromosome 5 clone CTC-551A13, complete sequence
          Length = 170529

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 472   gcacagaacagcaacctcag 491
             ||||||||||||||||||||
Sbjct: 74403 gcacagaacagcaacctcag 74384

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>gb|AC093475.9| Mus musculus chromosome 1, clone RP23-54K22, complete sequence
          Length = 248543

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 334    atgctggtggaagctgctga 353
              ||||||||||||||||||||
Sbjct: 216608 atgctggtggaagctgctga 216627

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>gb|AC108421.8| Mus musculus chromosome 19, clone RP23-433N7, complete sequence
          Length = 190980

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 2     tttgtacatatttattgattatat 25
             |||| |||||||||||||||||||
Sbjct: 46147 tttgaacatatttattgattatat 46124

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>emb|AL512361.3|CNS07EFA Human chromosome 14 DNA sequence BAC R-326E7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158305

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    tacaataattacacattcaa 76
             ||||||||||||||||||||
Sbjct: 98306 tacaataattacacattcaa 98287


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,518,275
Number of Sequences: 3902068
Number of extensions: 4518275
Number of successful extensions: 98542
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98133
Number of HSP's gapped (non-prelim): 403
length of query: 597
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 574
effective length of database: 17,143,297,704
effective search space: 9840252882096
effective search space used: 9840252882096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result