ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19l20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009349.1| Triticum aestivum clone wlm96.pk0007.e4:fis, full... 815 0.0
2gb|AY675583.1| Zea mays putative serine/threonine-specific prote... 101 3e-18
3gb|AY112593.1| Zea mays CL3200_1 mRNA sequence 101 3e-18
4ref|XM_475738.1| Oryza sativa (japonica cultivar-group), predic... 70 1e-08
5dbj|AK104868.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
6dbj|AK067158.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
7dbj|D82039.1| Oryza sativa mRNA for OSK1, complete cds 70 1e-08
8gb|AC111015.2| Oryza sativa (japonica cultivar-group) chromosome... 66 2e-07
9dbj|AB101655.1| Oryza sativa (japonica cultivar-group) OSK1 gene... 66 2e-07
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 66 2e-07
11gb|BT018428.1| Zea mays clone EL01N0363F09.d mRNA sequence 62 2e-06
12gb|AF062479.1|AF062479 Oryza sativa protein kinase SNF1 (Snf1) m... 54 6e-04
13emb|X82548.1|HVBKIN2 H.vulgare mRNA for SNF1-related protein kinase 50 0.009
14emb|CR846080.8| Zebrafish DNA sequence from clone DKEY-29P9 in l... 44 0.56
15gb|AC108819.15| Mus musculus chromosome 14, clone RP23-474O16, c... 42 2.2
16gb|AF143743.1| Lycopersicon esculentum SNF1 (SNF1) mRNA, complet... 42 2.2
17gb|AC154855.2| Mus musculus BAC clone RP23-18N3 from chromosome ... 42 2.2
18gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequ... 42 2.2
19gb|AC154764.2| Mus musculus BAC clone RP24-423N7 from chromosome... 42 2.2
20gb|AC151761.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 40 8.7
21gb|AC150421.2| Branchiostoma floridae clone CH302-78B15, complet... 40 8.7
22gb|AC158901.5| Mus musculus chromosome 15, clone RP23-77K13, com... 40 8.7
23gb|AC137974.13| Mus musculus chromosome 15, clone RP23-17J3, com... 40 8.7
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.7
25gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genom... 40 8.7
26gb|AY830085.1| Flavobacterium sp. 4214 beta-galactosidase precur... 40 8.7
27gb|AC117481.8| Homo sapiens 3 BAC RP11-642N14 (Roswell Park Canc... 40 8.7
28emb|AL663087.14| Mouse DNA sequence from clone RP23-431M5 on chr... 40 8.7
29gb|AC106881.9| Homo sapiens BAC clone RP11-710C12 from 4, comple... 40 8.7
30dbj|AK046759.1| Mus musculus 4 days neonate thymus cDNA, RIKEN f... 40 8.7
31dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
32gb|AF042089.1|AF042089 Homo sapiens chromosome 3, olfactory rece... 40 8.7
33gb|AE000783.1| Borrelia burgdorferi B31, complete genome 40 8.7
34dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome 40 8.7
35dbj|BS000022.1| Pan troglodytes chromosome 22 clone:PTB-131J13, ... 40 8.7
36dbj|BS000021.1| Pan troglodytes chromosome 22 clone:PTB-141K15, ... 40 8.7
37gb|AY422720.1| Caedibacter taeniospiralis plasmid pKAP298, compl... 40 8.7
38gb|AC108811.12| Mus musculus chromosome 8, clone RP23-284C19, co... 40 8.7
39gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 8.7
40emb|CR932040.2| Medicago truncatula chromosome 5 clone mth2-55h1... 40 8.7
41emb|Z81557.1|CEF59A1 Caenorhabditis elegans Cosmid F59A1, comple... 40 8.7
42emb|AL606962.22| Mouse DNA sequence from clone RP23-29H22 on chr... 40 8.7 
>gb|BT009349.1| Triticum aestivum clone wlm96.pk0007.e4:fis, full insert mRNA
            sequence
          Length = 2006

 Score =  815 bits (411), Expect = 0.0
 Identities = 568/619 (91%), Gaps = 16/619 (2%)
 Strand = Plus / Minus

                                                                        
Query: 29   tgaagaaattattggtgtgcgtggtctggtctggagacccagccagtaaaaattacatgc 88
            ||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1928 tgaagaaattattcgtgtacgtggtctggtctggagacccagacagtaaaaattacatgc 1869

                                                                        
Query: 89   aggtaaacagcagtagagtagtacagtatgtcccaaggggccaaaataggattaatcaat 148
            | ||||||||||||||||||| |  ||||||||||||||||||| ||||||||||||| |
Sbjct: 1868 aagtaaacagcagtagagtagga--gtatgtcccaaggggccaatataggattaatcagt 1811

                                                                        
Query: 149  aatacttttatatcctagtgcctttggcggcagctggaaacaacctgatggcactggttt 208
            ||||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||| 
Sbjct: 1810 aatacttctatatcctagtgcctttggcggcagctggaaataacctgatggcaatagttc 1751

                                                                        
Query: 209  cttgcttgcttcacttgcc----------aggtctaaattcagcttataggcgccgaaat 258
            |||||||||||||||||||          ||||||||||||||| |||||||||||||||
Sbjct: 1750 cttgcttgcttcacttgcccgcccctgccaggtctaaattcagcatataggcgccgaaat 1691

                                                                        
Query: 259  gagcacacaacagctccgcatgtctacatactccacaactttgatccgctggagaaagcg 318
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 1690 aagcacacaacagctccgcatgtctacatactccacgactttgatccgctggagaaagct 1631

                                                                        
Query: 319  tactatttacatctctttagagtggtacaacatacattccccgggcacgt-tggtatcag 377
            | |||||||||||||||||||||| ||||||||||||||| ||||||| | |||||||| 
Sbjct: 1630 tgctatttacatctctttagagtgatacaacatacattcctcgggcacatctggtatcaa 1571

                                                                        
Query: 378  aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 437
            | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 aagactctcagctgagctagaaaggcggcacatagatcaagaaagaggagatgcggcccg 1511

                                                                        
Query: 438  ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaagttcg 497
            || ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||
Sbjct: 1510 ctcgccctttgcaaatccagaaggtatttctcatctcttgttttgtaaagctgaagttcg 1451

                                                                        
Query: 498  aacttaattagatttaacttgtcacccacgtcatcggtttcaataggctctgcaataaag 557
            |||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| | |||
Sbjct: 1450 aacttaattaaatttaacttgtcacccaggtcgtcggtttcaataggctctgcactgaag 1391

                                                                        
Query: 558  ttataattggtatgattcatattgtcctgaccaggaaagcc---aggactccatctacat 614
            ||||||||||||||||||||||| |||||||| ||||||||   ||||||||||||||||
Sbjct: 1390 ttataattggtatgattcatattctcctgaccgggaaagccaggaggactccatctacat 1331

                               
Query: 615  ttcatgttatagtgtccaa 633
            |||||||||||||||||||
Sbjct: 1330 ttcatgttatagtgtccaa 1312
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>gb|AY675583.1| Zea mays putative serine/threonine-specific protein kinase (kin2)
           mRNA, partial cds
          Length = 849

 Score =  101 bits (51), Expect = 3e-18
 Identities = 172/212 (81%), Gaps = 9/212 (4%)
 Strand = Plus / Minus

                                                                       
Query: 417 agaaagaggagatgcggcccgctggccctttgcaaatccagaaggtatttctcgtccttt 476
           ||||||||||| || ||||| ||| | ||||||||||| || ||||||||||||||  ||
Sbjct: 458 agaaagaggagctgtggcccactgactctttgcaaatcgaggaggtatttctcgtctctt 399

                                                                       
Query: 477 gttttgtaaagctgaagttcgaacttaattagatttaacttgtcacccacgtcatcggtt 536
           |||||||| ||||||| ||| |||||||||| | ||||| | |||| || |  ||| |||
Sbjct: 398 gttttgtacagctgaatttcaaacttaattaaacttaacctctcactcaggctatcagtt 339

                                                                       
Query: 537 tcaataggctctgcaataaagttataattggtatgattcatattgtcctgaccaggaaag 596
           ||||| | | ||||| | ||||||| |||| |||||     |||    ||| ||||||||
Sbjct: 338 tcaatggaccctgcactgaagttatgattgttatga-----att----tgagcaggaaag 288

                                           
Query: 597 ccaggactccatctacatttcatgttatagtg 628
           |||||||||||||| || ||||||||||||||
Sbjct: 287 ccaggactccatctgcacttcatgttatagtg 256
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>gb|AY112593.1| Zea mays CL3200_1 mRNA sequence
          Length = 1019

 Score =  101 bits (51), Expect = 3e-18
 Identities = 172/212 (81%), Gaps = 9/212 (4%)
 Strand = Plus / Plus

                                                                       
Query: 417 agaaagaggagatgcggcccgctggccctttgcaaatccagaaggtatttctcgtccttt 476
           ||||||||||| || ||||| ||| | ||||||||||| || ||||||||||||||  ||
Sbjct: 348 agaaagaggagctgtggcccactgactctttgcaaatcgaggaggtatttctcgtctctt 407

                                                                       
Query: 477 gttttgtaaagctgaagttcgaacttaattagatttaacttgtcacccacgtcatcggtt 536
           |||||||| ||||||| ||| |||||||||| | ||||| | |||| || |  ||| |||
Sbjct: 408 gttttgtacagctgaatttcaaacttaattaaacttaacctctcactcaggctatcagtt 467

                                                                       
Query: 537 tcaataggctctgcaataaagttataattggtatgattcatattgtcctgaccaggaaag 596
           ||||| | | ||||| | ||||||| |||| |||||     |||    ||| ||||||||
Sbjct: 468 tcaatggaccctgcactgaagttatgattgttatga-----att----tgagcaggaaag 518

                                           
Query: 597 ccaggactccatctacatttcatgttatagtg 628
           |||||||||||||| || ||||||||||||||
Sbjct: 519 ccaggactccatctgcacttcatgttatagtg 550
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>ref|XM_475738.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1518

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                        
Query: 378  aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 437
            |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 1514 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 1455

                                                                   
Query: 438  ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 492
            ||| |||||||||| || ||||||||||| || ||| ||||||||||||||||||
Sbjct: 1454 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctgaa 1400



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 599  aggactccatctacatttcatgttatagtgtccaa 633
            |||||||||||| |||||||||||||| |||||||
Sbjct: 1287 aggactccatctgcatttcatgttataatgtccaa 1253
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>dbj|AK104868.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A03, full
           insert sequence
          Length = 1203

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 378 aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 437
           |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 847 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 788

                                                                  
Query: 438 ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 492
           ||| |||||||||| || ||||||||||| || ||| ||||||||||||||||||
Sbjct: 787 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctgaa 733



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 599 aggactccatctacatttcatgttatagtgtccaa 633
           |||||||||||| |||||||||||||| |||||||
Sbjct: 620 aggactccatctgcatttcatgttataatgtccaa 586
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>dbj|AK067158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094M16, full
            insert sequence
          Length = 2073

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                        
Query: 378  aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 437
            |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 1703 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 1644

                                                                   
Query: 438  ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 492
            ||| |||||||||| || ||||||||||| || ||| ||||||||||||||||||
Sbjct: 1643 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctgaa 1589



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 599  aggactccatctacatttcatgttatagtgtccaa 633
            |||||||||||| |||||||||||||| |||||||
Sbjct: 1476 aggactccatctgcatttcatgttataatgtccaa 1442
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>dbj|D82039.1| Oryza sativa mRNA for OSK1, complete cds
          Length = 2209

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                        
Query: 378  aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 437
            |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 1697 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 1638

                                                                   
Query: 438  ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 492
            ||| |||||||||| || ||||||||||| || ||| ||||||||||||||||||
Sbjct: 1637 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctgaa 1583



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 599  aggactccatctacatttcatgttatagtgtccaa 633
            |||||||||||| |||||||||||||| |||||||
Sbjct: 1470 aggactccatctgcatttcatgttataatgtccaa 1436
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>gb|AC111015.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1131_E09,
             complete sequence
          Length = 94399

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 93/113 (82%)
 Strand = Plus / Plus

                                                                         
Query: 378   aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 437
             |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 58069 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 58128

                                                                  
Query: 438   ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctg 490
             ||| |||||||||| || ||||||||||| || ||| ||||||||||||||||
Sbjct: 58129 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctg 58181



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 599   aggactccatctacatttcatgttatagtgtccaa 633
             |||||||||||| |||||||||||||| |||||||
Sbjct: 58582 aggactccatctgcatttcatgttataatgtccaa 58616
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>dbj|AB101655.1| Oryza sativa (japonica cultivar-group) OSK1 gene for SnRK1a protein
            kinase, complete cds
          Length = 6112

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 93/113 (82%)
 Strand = Plus / Minus

                                                                        
Query: 378  aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 437
            |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 5529 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 5470

                                                                 
Query: 438  ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctg 490
            ||| |||||||||| || ||||||||||| || ||| ||||||||||||||||
Sbjct: 5469 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctg 5417



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 599  aggactccatctacatttcatgttatagtgtccaa 633
            |||||||||||| |||||||||||||| |||||||
Sbjct: 5016 aggactccatctgcatttcatgttataatgtccaa 4982
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 93/113 (82%)
 Strand = Plus / Plus

                                                                            
Query: 378      aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 437
                |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 26140729 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 26140788

                                                                     
Query: 438      ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctg 490
                ||| |||||||||| || ||||||||||| || ||| ||||||||||||||||
Sbjct: 26140789 ctgaccctttgcaagtcaagaaggtatttttcatcccttgttttgtaaagctg 26140841



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 599      aggactccatctacatttcatgttatagtgtccaa 633
                |||||||||||| |||||||||||||| |||||||
Sbjct: 26141242 aggactccatctgcatttcatgttataatgtccaa 26141276
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>gb|BT018428.1| Zea mays clone EL01N0363F09.d mRNA sequence
          Length = 1948

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                  
Query: 595 agccaggactccatctacatttcatgttatagtgtccaa 633
           |||||||||||||||| ||||||||||| ||||||||||
Sbjct: 569 agccaggactccatctgcatttcatgttgtagtgtccaa 607



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 91/112 (81%)
 Strand = Plus / Plus

                                                                       
Query: 381 actctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccgctg 440
           ||||||||||| | ||| ||||||| ||| |  || |||||||| ||||| |  || |||
Sbjct: 352 actctcagctgagttagaaaggcggaacacaagtccagaaagagaagatgtgatccactg 411

                                                               
Query: 441 gccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 492
            |||||||||  || |||||||| ||||| ||| | ||||||||||||||||
Sbjct: 412 accctttgcaggtcaagaaggtacttctcatccctcgttttgtaaagctgaa 463
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>gb|AF062479.1|AF062479 Oryza sativa protein kinase SNF1 (Snf1) mRNA, complete cds
          Length = 2100

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 93/115 (80%)
 Strand = Plus / Minus

                                                                        
Query: 378  aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 437
            |||||||||||||| | ||| ||||| |  || || || |||||||| || || || || 
Sbjct: 1672 aggactctcagctgagttagaaaggcagagcacaggtccagaaagagaagctgtggtcca 1613

                                                                   
Query: 438  ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaa 492
            |||  ||||||||| || |||| |||||| || ||| ||||||||||||||||||
Sbjct: 1612 ctgagcctttgcaagtcaagaaagtatttttcatcccttgttttgtaaagctgaa 1558



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 599  aggactccatctacatttcatgttatagtgtccaa 633
            |||||||||||| |||||||||||||  |||||||
Sbjct: 1445 aggactccatctgcatttcatgttatgatgtccaa 1411
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>emb|X82548.1|HVBKIN2 H.vulgare mRNA for SNF1-related protein kinase
          Length = 1453

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 100/125 (80%)
 Strand = Plus / Minus

                                                                        
Query: 378  aggactctcagctgcgctaggaaggcggcacatagatcaagaaagaggagatgcggcccg 437
            |||||||||||||| | ||| ||||| | ||| || || ||||||||||| || || || 
Sbjct: 1452 aggactctcagctgggttagaaaggcagaacacaggtccagaaagaggagctgtggtcca 1393

                                                                        
Query: 438  ctggccctttgcaaatccagaaggtatttctcgtcctttgttttgtaaagctgaagttcg 497
            ||  |||||||||| || ||||| || || ||  || |||||||||| ||||||| ||| 
Sbjct: 1392 ctaaccctttgcaagtcgagaagatacttatcaccccttgttttgtacagctgaatttca 1333

                 
Query: 498  aactt 502
            |||||
Sbjct: 1332 aactt 1328



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 593  aaagccaggactccatctacatttcatgttatagtgtccaa 633
            ||||||||||||||| || || |||||||||||||| ||||
Sbjct: 1234 aaagccaggactccacctgcacttcatgttatagtgcccaa 1194
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>emb|CR846080.8| Zebrafish DNA sequence from clone DKEY-29P9 in linkage group 3, complete
              sequence
          Length = 242078

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 573    ttcatattgtcctgaccaggaa 594
              ||||||||||||||||||||||
Sbjct: 202165 ttcatattgtcctgaccaggaa 202144
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>gb|AC108819.15| Mus musculus chromosome 14, clone RP23-474O16, complete sequence
          Length = 195771

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 534    gtttcaataggctctgcaata 554
              |||||||||||||||||||||
Sbjct: 141225 gtttcaataggctctgcaata 141205
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>gb|AF143743.1| Lycopersicon esculentum SNF1 (SNF1) mRNA, complete cds
          Length = 1948

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 585  tgaccaggaaagccaggactccatctacatttcatgttata 625
            |||||||| |||| ||||  ||||| |||||||||||||||
Sbjct: 1345 tgaccaggtaagctaggaacccatcgacatttcatgttata 1305
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>gb|AC154855.2| Mus musculus BAC clone RP23-18N3 from chromosome 14, complete sequence
          Length = 197373

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 534    gtttcaataggctctgcaata 554
              |||||||||||||||||||||
Sbjct: 183266 gtttcaataggctctgcaata 183286
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>gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequence
          Length = 158596

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 437   gctggccctttgcaaatccagaagg 461
             |||||||||||||||||| ||||||
Sbjct: 16469 gctggccctttgcaaatcaagaagg 16445
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>gb|AC154764.2| Mus musculus BAC clone RP24-423N7 from chromosome 16, complete sequence
          Length = 159556

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 321    ctatttacatctctttagagt 341
              |||||||||||||||||||||
Sbjct: 151142 ctatttacatctctttagagt 151162
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>gb|AC151761.1| Ornithorhynchus anatinus chromosome UNK clone OABb-434P24, complete
             sequence
          Length = 134595

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 256   aatgagcacacaacagctccgcat 279
             |||||||| |||||||||||||||
Sbjct: 65169 aatgagcagacaacagctccgcat 65192
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>gb|AC150421.2| Branchiostoma floridae clone CH302-78B15, complete sequence
          Length = 159541

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 546   tctgcaataaagttataatt 565
             ||||||||||||||||||||
Sbjct: 39392 tctgcaataaagttataatt 39373
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>gb|AC158901.5| Mus musculus chromosome 15, clone RP23-77K13, complete sequence
          Length = 192643

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   attaatcaataatactttta 158
             ||||||||||||||||||||
Sbjct: 88475 attaatcaataatactttta 88456
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>gb|AC137974.13| Mus musculus chromosome 15, clone RP23-17J3, complete sequence
          Length = 219617

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   attaatcaataatactttta 158
             ||||||||||||||||||||
Sbjct: 47050 attaatcaataatactttta 47031
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 131      aaaataggattaatcaataa 150
                ||||||||||||||||||||
Sbjct: 20662751 aaaataggattaatcaataa 20662732
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>gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete
             sequence
          Length = 152417

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   aaaataggattaatcaataa 150
             ||||||||||||||||||||
Sbjct: 76508 aaaataggattaatcaataa 76489
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>gb|AY830085.1| Flavobacterium sp. 4214 beta-galactosidase precursor, gene, complete
            cds
          Length = 3141

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   aattacatgcaggtaaacag 98
            ||||||||||||||||||||
Sbjct: 2443 aattacatgcaggtaaacag 2462
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>gb|AC117481.8| Homo sapiens 3 BAC RP11-642N14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 138412

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 603   ctccatctacatttcatgtt 622
             ||||||||||||||||||||
Sbjct: 35068 ctccatctacatttcatgtt 35049
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>emb|AL663087.14| Mouse DNA sequence from clone RP23-431M5 on chromosome 11 Contains the 5'
              end of the Grb10 gene for growth factor receptor bound
              protein 10, a nucleosome assembly protein 1-like 1 (Nap1l1)
              pseudogene and three CpG islands, complete sequence
          Length = 174389

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 152    acttttatatcctagtgcctttgg 175
              |||||||||| |||||||||||||
Sbjct: 158314 acttttatattctagtgcctttgg 158291
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>gb|AC106881.9| Homo sapiens BAC clone RP11-710C12 from 4, complete sequence
          Length = 150889

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 405   gcacatagatcaagaaagag 424
             ||||||||||||||||||||
Sbjct: 19620 gcacatagatcaagaaagag 19639
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>dbj|AK046759.1| Mus musculus 4 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:B630013F22 product:FYN binding protein,
           full insert sequence
          Length = 2397

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 attaatcaataatactttta 158
           ||||||||||||||||||||
Sbjct: 417 attaatcaataatactttta 436
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 131      aaaataggattaatcaataa 150
                ||||||||||||||||||||
Sbjct: 20655780 aaaataggattaatcaataa 20655761
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>gb|AF042089.1|AF042089 Homo sapiens chromosome 3, olfactory receptor pseudogene cluster 1,
              complete sequence, and myosin light chain kinase (MLCK)
              pseudogene, partial sequence
          Length = 106926

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 603    ctccatctacatttcatgtt 622
              ||||||||||||||||||||
Sbjct: 105562 ctccatctacatttcatgtt 105543
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>gb|AE000783.1| Borrelia burgdorferi B31, complete genome
          Length = 910724

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    caataatacttttatatcct 164
              ||||||||||||||||||||
Sbjct: 140115 caataatacttttatatcct 140134
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>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 308     tggagaaagcgtactattta 327
               ||||||||||||||||||||
Sbjct: 1275497 tggagaaagcgtactattta 1275516
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>dbj|BS000022.1| Pan troglodytes chromosome 22 clone:PTB-131J13, map 22, complete
             sequences
          Length = 214189

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 501   ttaattagatttaacttgtc 520
             ||||||||||||||||||||
Sbjct: 61658 ttaattagatttaacttgtc 61677
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>dbj|BS000021.1| Pan troglodytes chromosome 22 clone:PTB-141K15, map 22, complete
              sequences
          Length = 183533

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 501    ttaattagatttaacttgtc 520
              ||||||||||||||||||||
Sbjct: 167503 ttaattagatttaacttgtc 167522
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>gb|AY422720.1| Caedibacter taeniospiralis plasmid pKAP298, complete sequence
          Length = 49112

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 542   aggctctgcaataaagttat 561
             ||||||||||||||||||||
Sbjct: 17681 aggctctgcaataaagttat 17700
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>gb|AC108811.12| Mus musculus chromosome 8, clone RP23-284C19, complete sequence
          Length = 212270

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    ggattaatcaataatacttt 156
              ||||||||||||||||||||
Sbjct: 132060 ggattaatcaataatacttt 132079
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 139     attaatcaataatactttta 158
               ||||||||||||||||||||
Sbjct: 5030177 attaatcaataatactttta 5030158
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>emb|CR932040.2| Medicago truncatula chromosome 5 clone mth2-55h1, COMPLETE SEQUENCE
          Length = 122965

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 555   aagttataattggtatgatt 574
             ||||||||||||||||||||
Sbjct: 86925 aagttataattggtatgatt 86944
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>emb|Z81557.1|CEF59A1 Caenorhabditis elegans Cosmid F59A1, complete sequence
          Length = 39236

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    aaccttgcaactgaagaaat 37
             ||||||||||||||||||||
Sbjct: 23938 aaccttgcaactgaagaaat 23919
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>emb|AL606962.22| Mouse DNA sequence from clone RP23-29H22 on chromosome 4, complete
             sequence
          Length = 223854

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 588   ccaggaaagccaggactcca 607
             ||||||||||||||||||||
Sbjct: 87844 ccaggaaagccaggactcca 87825


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,722,726
Number of Sequences: 3902068
Number of extensions: 5722726
Number of successful extensions: 115044
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114826
Number of HSP's gapped (non-prelim): 214
length of query: 640
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 617
effective length of database: 17,143,297,704
effective search space: 10577414683368
effective search space used: 10577414683368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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