ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19l16 |
|---|---|
| Clone Library Name | barley_pub |
>S1FA2_ORYSA (Q7XLX6) DNA-binding protein S1FA2| Length = 80 Score = 73.6 bits (179), Expect = 3e-13 Identities = 42/80 (52%), Positives = 46/80 (57%) Frame = -1 Query: 465 MAEQFAESANNVIIEEVNKGLNPGMIXXXXXXXXXXXXXVGNYALYLYAQXXXXXXXXXX 286 MA+QFA+SANNV+IEEVNKGLNPGMI VGNYALY+YAQ Sbjct: 1 MADQFADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKP 60 Query: 285 XXXXXXXXXXXKQGVSAPGE 226 KQGVSAPGE Sbjct: 61 VSKKKMKREKLKQGVSAPGE 80
>S1FA1_ORYSA (P42553) DNA-binding protein S1FA1| Length = 76 Score = 59.7 bits (143), Expect = 5e-09 Identities = 35/75 (46%), Positives = 39/75 (52%) Frame = -1 Query: 450 AESANNVIIEEVNKGLNPGMIXXXXXXXXXXXXXVGNYALYLYAQXXXXXXXXXXXXXXX 271 A+ +NN+IIEEVNKGLNPG I VGNYALY+YAQ Sbjct: 2 ADQSNNMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKK 61 Query: 270 XXXXXXKQGVSAPGE 226 KQGVSAPGE Sbjct: 62 LKREKLKQGVSAPGE 76
>S1FA_MAIZE (P42554) DNA-binding protein S1FA (Fragment)| Length = 63 Score = 44.3 bits (103), Expect = 2e-04 Identities = 28/63 (44%), Positives = 29/63 (46%) Frame = -1 Query: 414 NKGLNPGMIXXXXXXXXXXXXXVGNYALYLYAQXXXXXXXXXXXXXXXXXXXXXKQGVSA 235 NKGLNPGM+ VGNYALY YAQ KQGVSA Sbjct: 1 NKGLNPGMVVXLVVASFLLIFFVGNYALYXYAQKTLPPKKKKPVSKKKLKKEKLKQGVSA 60 Query: 234 PGE 226 PGE Sbjct: 61 PGE 63
>S1FA2_ARATH (Q42337) DNA-binding protein S1FA2| Length = 76 Score = 35.4 bits (80), Expect = 0.10 Identities = 23/73 (31%), Positives = 29/73 (39%) Frame = -1 Query: 444 SANNVIIEEVNKGLNPGMIXXXXXXXXXXXXXVGNYALYLYAQXXXXXXXXXXXXXXXXX 265 SA ++E KGLNPG+I + NY +Y+YAQ Sbjct: 6 SAGKAVVEA--KGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKLK 63 Query: 264 XXXXKQGVSAPGE 226 KQGV PGE Sbjct: 64 REKLKQGVPVPGE 76
>S1FA3_ARATH (Q93VI0) DNA-binding protein S1FA3| Length = 73 Score = 34.3 bits (77), Expect = 0.23 Identities = 22/63 (34%), Positives = 25/63 (39%) Frame = -1 Query: 414 NKGLNPGMIXXXXXXXXXXXXXVGNYALYLYAQXXXXXXXXXXXXXXXXXXXXXKQGVSA 235 +KGLNPG+I VGN+ LY YAQ KQGV Sbjct: 11 SKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGVQV 70 Query: 234 PGE 226 PGE Sbjct: 71 PGE 73
>S1FA_SPIOL (P42552) DNA-binding protein S1FA| Length = 70 Score = 33.9 bits (76), Expect = 0.30 Identities = 22/62 (35%), Positives = 25/62 (40%) Frame = -1 Query: 411 KGLNPGMIXXXXXXXXXXXXXVGNYALYLYAQXXXXXXXXXXXXXXXXXXXXXKQGVSAP 232 KGLNPG+I VGN+ LY YAQ KQGV+ P Sbjct: 9 KGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLKQGVAPP 68 Query: 231 GE 226 GE Sbjct: 69 GE 70
>S1FA1_ARATH (P42551) DNA-binding protein S1FA1| Length = 76 Score = 33.1 bits (74), Expect = 0.51 Identities = 21/62 (33%), Positives = 24/62 (38%) Frame = -1 Query: 411 KGLNPGMIXXXXXXXXXXXXXVGNYALYLYAQXXXXXXXXXXXXXXXXXXXXXKQGVSAP 232 KGLNPG+I + NY LY+YAQ KQGV P Sbjct: 15 KGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVPVP 74 Query: 231 GE 226 GE Sbjct: 75 GE 76
>GNRR2_HUMAN (Q96P88) Gonadotropin-releasing hormone II receptor (Type II GnRH| receptor) (GnRH-II-R) Length = 379 Score = 30.0 bits (66), Expect = 4.3 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -2 Query: 206 LMSIALCWAPFYLIKKTYQLEPQRLFM*KPCLEWYIVGIGHL 81 L++ LCW P+YL+ Y P L P L + +G L Sbjct: 270 LLTFILCWTPYYLLGMWYWFSPTMLTEVPPSLSHILFLLGLL 311
>GNRR2_CALJA (Q95MG6) Gonadotropin-releasing hormone II receptor (Type II GnRH| receptor) (GnRH-II-R) Length = 380 Score = 29.3 bits (64), Expect = 7.4 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = -2 Query: 206 LMSIALCWAPFYLIKKTYQLEPQRLFM*KPCLEWYIVGIGHL 81 L++ LCW P+YL+ Y P L P L + G L Sbjct: 270 LLTFILCWTPYYLLGLWYWFSPSMLSEVPPSLSHILFLFGLL 311
>GNRR2_CLAGA (O42329) Gonadotropin-releasing hormone II receptor (Type II GnRH| receptor) (GnRH-II-R) Length = 379 Score = 29.3 bits (64), Expect = 7.4 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -2 Query: 200 SIALCWAPFYLIKKTYQLEPQRL 132 S +CW P+YL+ Y +PQ L Sbjct: 277 SFVICWTPYYLLGIWYWFQPQML 299
>JAK1_MOUSE (P52332) Tyrosine-protein kinase JAK1 (EC 2.7.10.2) (Janus kinase 1)| (JAK-1) Length = 1153 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = +1 Query: 331 ERIVPNKEEQQEGRNHKQDDHSRVQALVHLFDDDIVR*LRELLRHGGNGI 480 E++ + + G NH D ++ L +L+ ++IV+ + GGNGI Sbjct: 902 EQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICMEDGGNGI 951
>APJ_MACMU (O97666) Apelin receptor (G-protein coupled receptor APJ)| (Angiotensin receptor-like 1) Length = 380 Score = 28.9 bits (63), Expect = 9.6 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = -2 Query: 206 LMSIALCWAPFYLIKKTYQL 147 +++ ALCW P++L+K Y L Sbjct: 254 VVTFALCWMPYHLVKTLYML 273
>APJ_HUMAN (P35414) Apelin receptor (G-protein coupled receptor APJ)| (Angiotensin receptor-like 1) (HG11) Length = 380 Score = 28.9 bits (63), Expect = 9.6 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = -2 Query: 206 LMSIALCWAPFYLIKKTYQL 147 +++ ALCW P++L+K Y L Sbjct: 254 VVTFALCWMPYHLVKTLYML 273
>GNRR2_MACMU (Q95JG1) Gonadotropin-releasing hormone II receptor (Type II GnRH| receptor) (GnRH-II-R) Length = 379 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = -2 Query: 206 LMSIALCWAPFYLIKKTYQLEPQRLFM*KPCLEWYIVGIGHL 81 L++ LCW P+YL+ Y P L P L + G L Sbjct: 270 LLTFILCWTPYYLLGLWYWFSPTMLTEVPPSLSHILFLFGLL 311
>GNRR2_CERAE (Q95MH6) Gonadotropin-releasing hormone II receptor (Type II GnRH| receptor) (GnRH-II-R) Length = 379 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = -2 Query: 206 LMSIALCWAPFYLIKKTYQLEPQRLFM*KPCLEWYIVGIGHL 81 L++ LCW P+YL+ Y P L P L + G L Sbjct: 270 LLTFILCWTPYYLLGLWYWFSPTMLTEVPPSLSHILFLFGLL 311
>GLGB_BACSU (P39118) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 627 Score = 28.9 bits (63), Expect = 9.6 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -2 Query: 230 GSEEIH*FLMSIALCWAPFYLI 165 G E+H FL+S AL WA FY I Sbjct: 282 GKPEVHSFLISNALYWAEFYHI 303
>RFNG_NOTVI (Q9YHB3) Beta-1,3-N-acetylglucosaminyltransferase radical fringe| (EC 2.4.1.222) (nrFng) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Length = 396 Score = 28.9 bits (63), Expect = 9.6 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +3 Query: 447 PRTAPPWRKRDLDQAPRPPHLLN 515 P+T PWR R Q PRPP L N Sbjct: 28 PKTKTPWRPRTYPQ-PRPPPLFN 49
>APJ_RAT (Q9JHG3) Apelin receptor (G-protein coupled receptor APJ)| (Angiotensin receptor-like 1) (B78) (GPCR34) Length = 377 Score = 28.9 bits (63), Expect = 9.6 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = -2 Query: 206 LMSIALCWAPFYLIKKTYQL 147 +++ ALCW P++L+K Y L Sbjct: 252 VVTFALCWMPYHLVKTLYML 271
>APJ_MOUSE (Q9WV08) Apelin receptor (G-protein coupled receptor APJ)| (Angiotensin receptor-like 1) (MSR) Length = 377 Score = 28.9 bits (63), Expect = 9.6 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = -2 Query: 206 LMSIALCWAPFYLIKKTYQL 147 +++ ALCW P++L+K Y L Sbjct: 252 VVTFALCWMPYHLVKTLYML 271 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,137,533 Number of Sequences: 219361 Number of extensions: 1167050 Number of successful extensions: 3142 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3087 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3139 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
