ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19l13 |
|---|---|
| Clone Library Name | barley_pub |
>IF5_PHAVU (P48724) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 443 Score = 46.2 bits (108), Expect = 8e-05 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Frame = -3 Query: 398 CYEDAKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFV-KALEPFVKWL 231 C ++ +K ++++LYD DVL E+ I+LW++KG + S + K +PF+ WL Sbjct: 377 CKPNSNALKEVALVLKTLYDADVLEEEAIVLWYQKGLKGDNKNSKIWKNAQPFIDWL 433
>IF5Z_ARATH (Q9S825) Probable eukaryotic translation initiation factor 5-2| (eIF-5 2) Length = 437 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 3/70 (4%) Frame = -3 Query: 431 ELELIYKVQTQCYEDA--KLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFV- 261 ++ L+ + T C ++ + +K ++++LYDQD++ E+ +L W+ KG + S V Sbjct: 357 QMHLLNSIGTFCGKNGNEEALKEVALVLKALYDQDIIEEEVVLDWYEKGLTGADKSSPVW 416 Query: 260 KALEPFVKWL 231 K ++PFV+WL Sbjct: 417 KNVKPFVEWL 426
>IF5_HUMAN (P55010) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 431 Score = 44.7 bits (104), Expect = 2e-04 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Frame = -3 Query: 386 AKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKAL----EPFVKWL 231 A+L+ P I++ +YD D+L E+ I+ W K S + + K + EPF+KWL Sbjct: 327 AQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWL 382
>IF5_RAT (Q07205) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 429 Score = 44.7 bits (104), Expect = 2e-04 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Frame = -3 Query: 386 AKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKAL----EPFVKWL 231 A+L+ P I++ +YD D+L E+ I+ W K S + + K + EPF+KWL Sbjct: 325 AQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWL 380
>IF5_MOUSE (P59325) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 429 Score = 44.7 bits (104), Expect = 2e-04 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%) Frame = -3 Query: 386 AKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKAL----EPFVKWL 231 A+L+ P I++ +YD D+L E+ I+ W K S + + K + EPF+KWL Sbjct: 325 AQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWL 380
>IF5_CAEEL (Q22918) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 436 Score = 43.1 bits (100), Expect = 7e-04 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 4/57 (7%) Frame = -3 Query: 389 DAKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKAL----EPFVKWL 231 +A+L+ II+SLYD+DV ED+++ W K S++ +SF K + +P + WL Sbjct: 313 EAELLSKSAHIIKSLYDEDVCEEDSLISWGEKPSSKYVSKSFAKKIIENSQPVLNWL 369
>IF5Y_ARATH (Q9C8F1) Probable eukaryotic translation initiation factor 5-1| (eIF-5 1) Length = 439 Score = 42.7 bits (99), Expect = 9e-04 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = -3 Query: 431 ELELIYKVQTQCYE-DAKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKA 255 ++ L+ +++ C + A+ K +I+ LYD+D+L ED I+ W+ KG +K Sbjct: 365 QMGLLNGIESFCMKASAEAAKEVALVIKGLYDEDILDEDVIVEWYNKGVKS---SPVLKN 421 Query: 254 LEPFVKWL 231 + PF++WL Sbjct: 422 VTPFIEWL 429
>IF5_MAIZE (P55876) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 451 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = -3 Query: 377 MKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKALEPFVKWL 231 +K P ++++LYD D+L E+TI+ W+ VK +PFV+WL Sbjct: 391 LKEVPVVLKALYDGDILDEETIVDWYNDAVAAGKDSQVVKNAKPFVEWL 439
>EI2BE_RABIT (P47823) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) Length = 721 Score = 40.8 bits (94), Expect = 0.003 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 5/120 (4%) Frame = -3 Query: 575 EVVRMLWDVLME-AVQWSGKNQQQNSNSALRQ--VNAWAGLMNAFCTSGKLELELIYKVQ 405 EV+++L V++E +Q + N AL + AW+ + + LE + ++ Sbjct: 591 EVMQVLSHVVLEFPLQQMDSPLEANRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIE 650 Query: 404 TQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILLWF-RKGSNQKGRQ-SFVKALEPFVKWL 231 E L +++ Y ++LAE+TIL WF ++ KGRQ + L+ F++WL Sbjct: 651 EFFLEHEALGTCIAKVLMGFYQLEILAEETILSWFGQRDVTDKGRQLRKNQQLQRFIQWL 710
>EI2BE_RAT (Q64350) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) Length = 716 Score = 39.7 bits (91), Expect = 0.007 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Frame = -3 Query: 482 VNAWAGLMNAFCTSGKLELELIYKVQTQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILLW 303 + AW+ + + LE + ++ E L+ +++ + Y ++LAE+TIL W Sbjct: 620 LKAWSPVFRNYIKRAADHLEALAAIEDFFLEHETLVPSLAKVLMAFYQLEILAEETILSW 679 Query: 302 F-RKGSNQKGRQ-SFVKALEPFVKWL 231 F ++ KG+Q + L+ F++WL Sbjct: 680 FSQRDITDKGQQLRKNQQLQRFIQWL 705
>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1600 Score = 38.9 bits (89), Expect = 0.012 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%) Frame = -3 Query: 548 LMEAVQWSGKNQQQNSNSALRQVNAWAGLMNAFCTSGKLELELIYKVQTQCYEDAKLMKL 369 LM AV +S + + + A A L+ + + EL+ +Y +Q + L Sbjct: 1483 LMTAVCYSAIIFETPLRVDVAVLKARAKLLQKYLCDEQKELQALYALQALVVTLEQPPNL 1542 Query: 368 FPEIIRSLYDQDVLAEDTILLW--FRKGSNQKGRQSFVKALEPFVKWL 231 +LYD+DV+ ED W + + Q+G+ +K++ F KWL Sbjct: 1543 LRMFFDALYDEDVVKEDAFYSWESSKDPAEQQGKGVALKSVTAFFKWL 1590
>EI2BE_HUMAN (Q13144) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) Length = 721 Score = 38.5 bits (88), Expect = 0.016 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Frame = -3 Query: 482 VNAWAGLMNAFCTSGKLELELIYKVQTQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILLW 303 + AW+ + + LE + ++ E L +++ + Y ++LAE+TIL W Sbjct: 625 LKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEILAEETILSW 684 Query: 302 F-RKGSNQKGRQ-SFVKALEPFVKWL 231 F ++ + KG+Q + L+ F++WL Sbjct: 685 FSQRDTTDKGQQLRKNQQLQRFIQWL 710
>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) Length = 1600 Score = 37.0 bits (84), Expect = 0.047 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Frame = -3 Query: 470 AGLMNAFCTSGKLELELIYKVQTQCY---EDAKLMKLFPEIIRSLYDQDVLAEDTILLW- 303 A L+ + + EL+ +Y +Q + A L+++F + +LYD+DV+ ED W Sbjct: 1508 ARLLQKYLCDEQKELQALYALQALVVTLEQPANLLRMFFD---ALYDEDVVKEDAFYSWE 1564 Query: 302 -FRKGSNQKGRQSFVKALEPFVKWL 231 + + Q+G+ +K++ F WL Sbjct: 1565 SSKDPAEQQGKGVALKSVTAFFNWL 1589
>IF5_YEAST (P38431) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 405 Score = 34.3 bits (77), Expect = 0.31 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Frame = -3 Query: 392 EDAKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSN----QKGRQSFVKALEPFVKWL 231 E L+ L P+I+ LY+ D+++E+ I+ + K S ++ + +A +PF+ WL Sbjct: 335 EHKDLIPLLPKILVQLYNNDIISEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWL 392
>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1585 Score = 33.9 bits (76), Expect = 0.40 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Frame = -3 Query: 431 ELELIYKVQTQCY---EDAKLMKLFPEIIRSLYDQDVLAEDTILLW--FRKGSNQKGRQS 267 EL+ +Y +Q + A L+++F + LYD++V++ED W + + Q G+ Sbjct: 1507 ELQALYALQASIVKLDQPANLLRMFFDC---LYDEEVISEDAFYKWESSKDPAEQNGKGV 1563 Query: 266 FVKALEPFVKWL 231 +K++ F WL Sbjct: 1564 ALKSVTAFFTWL 1575
>IF4G3_MOUSE (Q80XI3) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1579 Score = 33.5 bits (75), Expect = 0.52 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Frame = -3 Query: 431 ELELIYKVQTQCY---EDAKLMKLFPEIIRSLYDQDVLAEDTILLW--FRKGSNQKGRQS 267 EL+ +Y +Q + A L+++F + LYD++V++ED W + + Q G+ Sbjct: 1501 ELQALYALQASIVKLDQPANLLRMFFDC---LYDEEVISEDAFYKWESSKDPAEQAGKGV 1557 Query: 266 FVKALEPFVKWL 231 +K++ F WL Sbjct: 1558 ALKSVTAFFTWL 1569
>EI2BE_CANAL (P87163) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) (Guanine nucleotide exchange factor subunit GCD6) (GCD complex subunit GCD6) (Fragment) Length = 189 Score = 33.5 bits (75), Expect = 0.52 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = -3 Query: 356 IRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKALEPFVKWL 231 ++S YD +V+ E+ IL W+ G N + R K F+ WL Sbjct: 136 VKSFYDMEVVEEENILKWWNDGENDEVRTLAAK----FITWL 173
>IF4G1_RABIT (P41110) Eukaryotic translation initiation factor 4 gamma 1| (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220) Length = 1402 Score = 33.1 bits (74), Expect = 0.68 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = -3 Query: 392 EDAKLMKLFPEIIRSLYDQDVLAEDTILLW--FRKGSNQKGRQSFVKALEPFVKWL 231 + A L+++F + +LYD+DV+ E+ W + + Q+G+ +K++ F KWL Sbjct: 1339 QPANLLRMFFD---ALYDEDVVKEEAFYSWESSKDPAEQQGKGVALKSVTAFFKWL 1391
>EI2BE_YEAST (P32501) Translation initiation factor eIF-2B epsilon subunit| (eIF-2B GDP-GTP exchange factor) (Guanine nucleotide exchange factor subunit GCD6) (GCD complex subunit GCD6) Length = 712 Score = 32.7 bits (73), Expect = 0.89 Identities = 19/64 (29%), Positives = 32/64 (50%) Frame = -3 Query: 422 LIYKVQTQCYEDAKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKALEPF 243 ++ K+ Q ++ L+ LF ++ SLYD D++ ED I W+ S K + Sbjct: 639 IMEKIVEQSFDKPDLI-LFSALV-SLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKW 696 Query: 242 VKWL 231 V+WL Sbjct: 697 VEWL 700
>ASP23_STAAW (P0A0P7) Alkaline shock protein 23| Length = 169 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -3 Query: 623 TEVVKQQVKDAKFPDIEVVRMLWDVLMEAVQWSGKNQQQNSNS 495 TE+VK+QVK D+ V M D +M +W K+++ N N+ Sbjct: 119 TELVKEQVKYITGLDVVEVNMQVDDVMTQKEWKQKHEKNNENN 161
>ASP23_STAAU (P0A0P8) Alkaline shock protein 23| Length = 169 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -3 Query: 623 TEVVKQQVKDAKFPDIEVVRMLWDVLMEAVQWSGKNQQQNSNS 495 TE+VK+QVK D+ V M D +M +W K+++ N N+ Sbjct: 119 TELVKEQVKYITGLDVVEVNMQVDDVMTQKEWKQKHEKNNENN 161
>ASP23_STAAS (Q6G7D2) Alkaline shock protein 23| Length = 169 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -3 Query: 623 TEVVKQQVKDAKFPDIEVVRMLWDVLMEAVQWSGKNQQQNSNS 495 TE+VK+QVK D+ V M D +M +W K+++ N N+ Sbjct: 119 TELVKEQVKYITGLDVVEVNMQVDDVMTQKEWKQKHEKNNENN 161
>ASP23_STAAR (Q6GEP7) Alkaline shock protein 23| Length = 169 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -3 Query: 623 TEVVKQQVKDAKFPDIEVVRMLWDVLMEAVQWSGKNQQQNSNS 495 TE+VK+QVK D+ V M D +M +W K+++ N N+ Sbjct: 119 TELVKEQVKYITGLDVVEVNMQVDDVMTQKEWKQKHEKNNENN 161
>ASP23_STAAN (P99157) Alkaline shock protein 23| Length = 169 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -3 Query: 623 TEVVKQQVKDAKFPDIEVVRMLWDVLMEAVQWSGKNQQQNSNS 495 TE+VK+QVK D+ V M D +M +W K+++ N N+ Sbjct: 119 TELVKEQVKYITGLDVVEVNMQVDDVMTQKEWKQKHEKNNENN 161
>ASP23_STAAM (P0A0P6) Alkaline shock protein 23| Length = 169 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -3 Query: 623 TEVVKQQVKDAKFPDIEVVRMLWDVLMEAVQWSGKNQQQNSNS 495 TE+VK+QVK D+ V M D +M +W K+++ N N+ Sbjct: 119 TELVKEQVKYITGLDVVEVNMQVDDVMTQKEWKQKHEKNNENN 161
>ASP23_STAAC (Q5HE23) Alkaline shock protein 23| Length = 169 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -3 Query: 623 TEVVKQQVKDAKFPDIEVVRMLWDVLMEAVQWSGKNQQQNSNS 495 TE+VK+QVK D+ V M D +M +W K+++ N N+ Sbjct: 119 TELVKEQVKYITGLDVVEVNMQVDDVMTQKEWKQKHEKNNENN 161
>IF5_DROME (Q9VXK6) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 464 Score = 30.0 bits (66), Expect = 5.8 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Frame = -3 Query: 380 LMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKALE----PFVKWL 231 LM I + YD D+L E IL W +K S + ++ + PFV WL Sbjct: 352 LMSKVAGIFKLFYDLDILDEAVILEWAQKVSKRHVSKNIAAEIHEKAMPFVLWL 405
>ASP23_STAES (Q8CNG0) Alkaline shock protein 23| Length = 166 Score = 30.0 bits (66), Expect = 5.8 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = -3 Query: 623 TEVVKQQVKDAKFPDIEVVRMLWDVLMEAVQWSGKNQQQNSNSALRQ 483 T++VK+QVK ++ V M D +M +W KN++ N + R+ Sbjct: 117 TDLVKEQVKYITGLEVVEVNMQVDDVMTKKEWQQKNEKDNKENNERE 163
>ASP23_STAEQ (Q5HM47) Alkaline shock protein 23| Length = 166 Score = 30.0 bits (66), Expect = 5.8 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = -3 Query: 623 TEVVKQQVKDAKFPDIEVVRMLWDVLMEAVQWSGKNQQQNSNSALRQ 483 T++VK+QVK ++ V M D +M +W KN++ N + R+ Sbjct: 117 TDLVKEQVKYITGLEVVEVNMQVDDVMTKKEWQQKNEKDNKENNERE 163
>NADE_MYCLE (Q9CBZ6) Glutamine-dependent NAD(+) synthetase (EC 6.3.5.1) (NAD(+)| synthase [glutamine-hydrolyzing]) Length = 680 Score = 29.3 bits (64), Expect = 9.9 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = -3 Query: 419 IYKVQTQCYEDAKLMKLFPEIIRSLYD-QDVLAEDTIL 309 + ++ QC++D + +FPE+ S Y +D+L +D +L Sbjct: 33 VLRLARQCHDDGVAVAVFPELTLSGYSIEDILLQDLLL 70
>ARGC_SYNP6 (Q5N5V5) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 352 Score = 29.3 bits (64), Expect = 9.9 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = -3 Query: 398 CYEDAKLMKLFPEIIRSLYDQDVLAEDTILLWFRKGSNQKGRQSFVKAL 252 CY A L+ L P + + L D D TI++ + G++ GRQ+ AL Sbjct: 155 CYPTASLLALAPALKQGLIDPD-----TIVIDAKSGTSGAGRQAKTNAL 198 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,960,000 Number of Sequences: 219361 Number of extensions: 1750538 Number of successful extensions: 4035 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3939 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4035 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
