Clone Name | rbasd19l13 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK071277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023082M08, full insert sequence Length = 1609 Score = 488 bits (246), Expect = e-134 Identities = 369/410 (90%) Strand = Plus / Minus Query: 206 tttattcttcctcctctgcctcctcaagccatttgacgaaaggctccagagctttcacga 265 ||||||| |||||||| |||||||| |||||||| || ||||| ||||| ||||| |||| Sbjct: 1378 tttattcctcctcctcggcctcctccagccatttaacaaaaggttccagtgctttgacga 1319 Query: 266 aagattgccttcctttttggtttgaacccttgcggaaccaaagaagtatggtatcttcag 325 |||||||||| || ||| ||||||||||||||||||||||||| || ||||||||||||| Sbjct: 1318 aagattgcctgccctttgggtttgaacccttgcggaaccaaaggaggatggtatcttcag 1259 Query: 326 cgaggacatcttgatcatacagagatcttataatttcagggaacagcttcatcaacttag 385 | ||||||||||| |||||||| | ||| || |||||||| || |||||||||| ||||| Sbjct: 1258 ctaggacatcttggtcatacagcgttctgattatttcaggaaatagcttcatcagcttag 1199 Query: 386 cgtcctcataacactgtgtctggaccttgtatatgagttccagttctagctttccacttg 445 | |||||||| ||||||||||| || |||||||||||||| ||||| ||| | ||||||| Sbjct: 1198 catcctcatagcactgtgtctgaactttgtatatgagttcgagttcaagcctgccacttg 1139 Query: 446 tgcaaaatgcattcataagaccagcccaagcattcacctgccgaagtgctgaattagaat 505 |||| |||||||||| ||| |||||||| || |||||||||||||||||||||||||||| Sbjct: 1138 tgcagaatgcattcaaaaggccagcccatgctttcacctgccgaagtgctgaattagaat 1079 Query: 506 tttgctgctgattctttccagaccactgaacagcctccataagcacatcccacagcatgc 565 |||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 1078 tttgttgctggttcttcccagaccactgaacagcctccatcagcacatcccatagcatgc 1019 Query: 566 gaacaacctctatatcaggaaatttagcatctttaacctgttgcttgaca 615 |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1018 gaacaacctctatatcaggaaatttagcatctttcacctgttgcttgaca 969
>dbj|AK059141.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-A05, full insert sequence Length = 613 Score = 488 bits (246), Expect = e-134 Identities = 369/410 (90%) Strand = Plus / Minus Query: 206 tttattcttcctcctctgcctcctcaagccatttgacgaaaggctccagagctttcacga 265 ||||||| |||||||| |||||||| |||||||| || ||||| ||||| ||||| |||| Sbjct: 431 tttattcctcctcctcggcctcctccagccatttaacaaaaggttccagtgctttgacga 372 Query: 266 aagattgccttcctttttggtttgaacccttgcggaaccaaagaagtatggtatcttcag 325 |||||||||| || ||| ||||||||||||||||||||||||| || ||||||||||||| Sbjct: 371 aagattgcctgccctttgggtttgaacccttgcggaaccaaaggaggatggtatcttcag 312 Query: 326 cgaggacatcttgatcatacagagatcttataatttcagggaacagcttcatcaacttag 385 | ||||||||||| |||||||| | ||| || |||||||| || |||||||||| ||||| Sbjct: 311 ctaggacatcttggtcatacagcgttctgattatttcaggaaatagcttcatcagcttag 252 Query: 386 cgtcctcataacactgtgtctggaccttgtatatgagttccagttctagctttccacttg 445 | |||||||| ||||||||||| || |||||||||||||| ||||| ||| | ||||||| Sbjct: 251 catcctcatagcactgtgtctgaactttgtatatgagttcgagttcaagcctgccacttg 192 Query: 446 tgcaaaatgcattcataagaccagcccaagcattcacctgccgaagtgctgaattagaat 505 |||| |||||||||| ||| |||||||| || |||||||||||||||||||||||||||| Sbjct: 191 tgcagaatgcattcaaaaggccagcccatgctttcacctgccgaagtgctgaattagaat 132 Query: 506 tttgctgctgattctttccagaccactgaacagcctccataagcacatcccacagcatgc 565 |||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 131 tttgttgctggttcttcccagaccactgaacagcctccatcagcacatcccatagcatgc 72 Query: 566 gaacaacctctatatcaggaaatttagcatctttaacctgttgcttgaca 615 |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 71 gaacaacctctatatcaggaaatttagcatctttcacctgttgcttgaca 22
>gb|AY596583.1| Saccharum officinarum clone SCBGLR1003E06, complete sequence Length = 1627 Score = 430 bits (217), Expect = e-117 Identities = 361/409 (88%) Strand = Plus / Plus Query: 207 ttattcttcctcctctgcctcctcaagccatttgacgaaaggctccagagctttcacgaa 266 ||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 320 ttattcttcctcctcagcctcctcgagccatttgacaaacggctccagagctttcacgaa 379 Query: 267 agattgccttcctttttggtttgaacccttgcggaaccaaagaagtatggtatcttcagc 326 ||||||||| || || |||||||||| || ||||||||||| || | ||||||||||| Sbjct: 380 agattgcctgcccttcgggtttgaacctttacggaaccaaaggaggacagtatcttcagc 439 Query: 327 gaggacatcttgatcatacagagatcttataatttcagggaacagcttcatcaacttagc 386 ||||||||||| |||||||| | |||||| |||||||| ||||||||||||| |||||| Sbjct: 440 taggacatcttggtcatacagtgttcttatgatttcaggaaacagcttcatcagcttagc 499 Query: 387 gtcctcataacactgtgtctggaccttgtatatgagttccagttctagctttccacttgt 446 |||||||| ||||| ||||| || |||||||| ||||||||||| || | ||||| || Sbjct: 500 atcctcatagcactgcgtctgaactttgtatataagttccagttcaagtctgccactcgt 559 Query: 447 gcaaaatgcattcataagaccagcccaagcattcacctgccgaagtgctgaattagaatt 506 |||||| ||||||| ||| |||||||||| ||||||||||||||||||| ||||||||| Sbjct: 560 gcaaaaagcattcaaaagctcagcccaagctttcacctgccgaagtgctgcattagaatt 619 Query: 507 ttgctgctgattctttccagaccactgaacagcctccataagcacatcccacagcatgcg 566 ||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 620 ttgttgctggttcttcccagaccactgaacagcctccatgagcacatcccacaacatgcg 679 Query: 567 aacaacctctatatcaggaaatttagcatctttaacctgttgcttgaca 615 || |||||||| |||||||||||||||||| ||||| || ||||||||| Sbjct: 680 aataacctctaaatcaggaaatttagcatccttaacttgctgcttgaca 728
>gb|AY103565.1| Zea mays PCO067369 mRNA sequence Length = 1771 Score = 414 bits (209), Expect = e-112 Identities = 359/409 (87%) Strand = Plus / Minus Query: 207 ttattcttcctcctctgcctcctcaagccatttgacgaaaggctccagagctttcacgaa 266 ||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||| Sbjct: 1385 ttattcttcctcctcagcctcctcgagccatttgacaaacggctccagagctttcacgaa 1326 Query: 267 agattgccttcctttttggtttgaacccttgcggaaccaaagaagtatggtatcttcagc 326 ||||||||| || || ||||||||||| || ||||||||||| || | ||||||||||| Sbjct: 1325 agattgcctgcccttctggtttgaacctttacggaaccaaagcaggacagtatcttcagc 1266 Query: 327 gaggacatcttgatcatacagagatcttataatttcagggaacagcttcatcaacttagc 386 ||||||||||| |||||||| | |||||| |||||||| ||||||||||||| |||||| Sbjct: 1265 taggacatcttggtcatacagtgttcttatgatttcaggaaacagcttcatcagcttagc 1206 Query: 387 gtcctcataacactgtgtctggaccttgtatatgagttccagttctagctttccacttgt 446 |||||||| ||||||||||| || |||||||| ||||||||||| || | ||||| || Sbjct: 1205 atcctcatagcactgtgtctgtactttgtatataagttccagttcgagtctgccactcgt 1146 Query: 447 gcaaaatgcattcataagaccagcccaagcattcacctgccgaagtgctgaattagaatt 506 |||||| ||||||| ||| ||||||| || ||||||||||||||||||| ||||||||| Sbjct: 1145 gcaaaaagcattcaaaagctcagcccatgctttcacctgccgaagtgctgcattagaatt 1086 Query: 507 ttgctgctgattctttccagaccactgaacagcctccataagcacatcccacagcatgcg 566 || ||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||| Sbjct: 1085 ctgttgctggttcttcccagaccactgaacagcctccatgagcacatcccacaacatgcg 1026 Query: 567 aacaacctctatatcaggaaatttagcatctttaacctgttgcttgaca 615 || ||||||| |||||||||||||||||| ||||| || || |||||| Sbjct: 1025 aatgacctctagatcaggaaatttagcatccttaacttgctgtttgaca 977
>gb|AC148235.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0036H01, complete sequence Length = 182504 Score = 220 bits (111), Expect = 4e-54 Identities = 129/135 (95%) Strand = Plus / Minus Query: 481 acctgccgaagtgctgaattagaattttgctgctgattctttccagaccactgaacagcc 540 ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 90872 acctgccgaagtgctgaattagaattttgttgctggttcttcccagaccactgaacagcc 90813 Query: 541 tccataagcacatcccacagcatgcgaacaacctctatatcaggaaatttagcatcttta 600 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 90812 tccatcagcacatcccatagcatgcgaacaacctctatatcaggaaatttagcatctttc 90753 Query: 601 acctgttgcttgaca 615 ||||||||||||||| Sbjct: 90752 acctgttgcttgaca 90738 Score = 210 bits (106), Expect = 4e-51 Identities = 178/202 (88%) Strand = Plus / Minus Query: 284 ggtttgaacccttgcggaaccaaagaagtatggtatcttcagcgaggacatcttgatcat 343 ||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||| Sbjct: 93154 ggtttgaacccttgcggaaccaaaggaggatggtatcttcagctaggacatcttggtcat 93095 Query: 344 acagagatcttataatttcagggaacagcttcatcaacttagcgtcctcataacactgtg 403 |||| | ||| || |||||||| || |||||||||| |||||| |||||||| ||||||| Sbjct: 93094 acagcgttctgattatttcaggaaatagcttcatcagcttagcatcctcatagcactgtg 93035 Query: 404 tctggaccttgtatatgagttccagttctagctttccacttgtgcaaaatgcattcataa 463 |||| || |||||||||||||| ||||| ||| | ||||||||||| |||||||||| || Sbjct: 93034 tctgaactttgtatatgagttcgagttcaagcctgccacttgtgcagaatgcattcaaaa 92975 Query: 464 gaccagcccaagcattcacctg 485 | |||||||| || |||||||| Sbjct: 92974 ggccagcccatgctttcacctg 92953 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Minus Query: 206 tttattcttcctcctctgcctcctcaagccatttgacgaaaggctccagagctttcacga 265 ||||||| |||||||| |||||||| |||||||| || ||||| ||||| ||||| |||| Sbjct: 93601 tttattcctcctcctcggcctcctccagccatttaacaaaaggttccagtgctttgacga 93542 Query: 266 aagattgcct 275 |||||||||| Sbjct: 93541 aagattgcct 93532
>gb|AC148658.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018P20 map near S6115, complete sequence Length = 139249 Score = 220 bits (111), Expect = 4e-54 Identities = 129/135 (95%) Strand = Plus / Plus Query: 481 acctgccgaagtgctgaattagaattttgctgctgattctttccagaccactgaacagcc 540 ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 137826 acctgccgaagtgctgaattagaattttgttgctggttcttcccagaccactgaacagcc 137885 Query: 541 tccataagcacatcccacagcatgcgaacaacctctatatcaggaaatttagcatcttta 600 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 137886 tccatcagcacatcccatagcatgcgaacaacctctatatcaggaaatttagcatctttc 137945 Query: 601 acctgttgcttgaca 615 ||||||||||||||| Sbjct: 137946 acctgttgcttgaca 137960 Score = 210 bits (106), Expect = 4e-51 Identities = 178/202 (88%) Strand = Plus / Plus Query: 284 ggtttgaacccttgcggaaccaaagaagtatggtatcttcagcgaggacatcttgatcat 343 ||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||| Sbjct: 135544 ggtttgaacccttgcggaaccaaaggaggatggtatcttcagctaggacatcttggtcat 135603 Query: 344 acagagatcttataatttcagggaacagcttcatcaacttagcgtcctcataacactgtg 403 |||| | ||| || |||||||| || |||||||||| |||||| |||||||| ||||||| Sbjct: 135604 acagcgttctgattatttcaggaaatagcttcatcagcttagcatcctcatagcactgtg 135663 Query: 404 tctggaccttgtatatgagttccagttctagctttccacttgtgcaaaatgcattcataa 463 |||| || |||||||||||||| ||||| ||| | ||||||||||| |||||||||| || Sbjct: 135664 tctgaactttgtatatgagttcgagttcaagcctgccacttgtgcagaatgcattcaaaa 135723 Query: 464 gaccagcccaagcattcacctg 485 | |||||||| || |||||||| Sbjct: 135724 ggccagcccatgctttcacctg 135745 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 206 tttattcttcctcctctgcctcctcaagccatttgacgaaaggctccagagctttcacga 265 ||||||| |||||||| |||||||| |||||||| || ||||| ||||| ||||| |||| Sbjct: 135097 tttattcctcctcctcggcctcctccagccatttaacaaaaggttccagtgctttgacga 135156 Query: 266 aagattgcct 275 |||||||||| Sbjct: 135157 aagattgcct 135166
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 220 bits (111), Expect = 4e-54 Identities = 129/135 (95%) Strand = Plus / Plus Query: 481 acctgccgaagtgctgaattagaattttgctgctgattctttccagaccactgaacagcc 540 ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 12077200 acctgccgaagtgctgaattagaattttgttgctggttcttcccagaccactgaacagcc 12077259 Query: 541 tccataagcacatcccacagcatgcgaacaacctctatatcaggaaatttagcatcttta 600 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 12077260 tccatcagcacatcccatagcatgcgaacaacctctatatcaggaaatttagcatctttc 12077319 Query: 601 acctgttgcttgaca 615 ||||||||||||||| Sbjct: 12077320 acctgttgcttgaca 12077334 Score = 210 bits (106), Expect = 4e-51 Identities = 178/202 (88%) Strand = Plus / Plus Query: 284 ggtttgaacccttgcggaaccaaagaagtatggtatcttcagcgaggacatcttgatcat 343 ||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||| Sbjct: 12074918 ggtttgaacccttgcggaaccaaaggaggatggtatcttcagctaggacatcttggtcat 12074977 Query: 344 acagagatcttataatttcagggaacagcttcatcaacttagcgtcctcataacactgtg 403 |||| | ||| || |||||||| || |||||||||| |||||| |||||||| ||||||| Sbjct: 12074978 acagcgttctgattatttcaggaaatagcttcatcagcttagcatcctcatagcactgtg 12075037 Query: 404 tctggaccttgtatatgagttccagttctagctttccacttgtgcaaaatgcattcataa 463 |||| || |||||||||||||| ||||| ||| | ||||||||||| |||||||||| || Sbjct: 12075038 tctgaactttgtatatgagttcgagttcaagcctgccacttgtgcagaatgcattcaaaa 12075097 Query: 464 gaccagcccaagcattcacctg 485 | |||||||| || |||||||| Sbjct: 12075098 ggccagcccatgctttcacctg 12075119 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 206 tttattcttcctcctctgcctcctcaagccatttgacgaaaggctccagagctttcacga 265 ||||||| |||||||| |||||||| |||||||| || ||||| ||||| ||||| |||| Sbjct: 12074471 tttattcctcctcctcggcctcctccagccatttaacaaaaggttccagtgctttgacga 12074530 Query: 266 aagattgcct 275 |||||||||| Sbjct: 12074531 aagattgcct 12074540
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 220 bits (111), Expect = 4e-54 Identities = 129/135 (95%) Strand = Plus / Plus Query: 481 acctgccgaagtgctgaattagaattttgctgctgattctttccagaccactgaacagcc 540 ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 12156507 acctgccgaagtgctgaattagaattttgttgctggttcttcccagaccactgaacagcc 12156566 Query: 541 tccataagcacatcccacagcatgcgaacaacctctatatcaggaaatttagcatcttta 600 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 12156567 tccatcagcacatcccatagcatgcgaacaacctctatatcaggaaatttagcatctttc 12156626 Query: 601 acctgttgcttgaca 615 ||||||||||||||| Sbjct: 12156627 acctgttgcttgaca 12156641 Score = 210 bits (106), Expect = 4e-51 Identities = 178/202 (88%) Strand = Plus / Plus Query: 284 ggtttgaacccttgcggaaccaaagaagtatggtatcttcagcgaggacatcttgatcat 343 ||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||| Sbjct: 12154225 ggtttgaacccttgcggaaccaaaggaggatggtatcttcagctaggacatcttggtcat 12154284 Query: 344 acagagatcttataatttcagggaacagcttcatcaacttagcgtcctcataacactgtg 403 |||| | ||| || |||||||| || |||||||||| |||||| |||||||| ||||||| Sbjct: 12154285 acagcgttctgattatttcaggaaatagcttcatcagcttagcatcctcatagcactgtg 12154344 Query: 404 tctggaccttgtatatgagttccagttctagctttccacttgtgcaaaatgcattcataa 463 |||| || |||||||||||||| ||||| ||| | ||||||||||| |||||||||| || Sbjct: 12154345 tctgaactttgtatatgagttcgagttcaagcctgccacttgtgcagaatgcattcaaaa 12154404 Query: 464 gaccagcccaagcattcacctg 485 | |||||||| || |||||||| Sbjct: 12154405 ggccagcccatgctttcacctg 12154426 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 206 tttattcttcctcctctgcctcctcaagccatttgacgaaaggctccagagctttcacga 265 ||||||| |||||||| |||||||| |||||||| || ||||| ||||| ||||| |||| Sbjct: 12153778 tttattcctcctcctcggcctcctccagccatttaacaaaaggttccagtgctttgacga 12153837 Query: 266 aagattgcct 275 |||||||||| Sbjct: 12153838 aagattgcct 12153847
>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence Length = 158384 Score = 113 bits (57), Expect = 7e-22 Identities = 147/177 (83%) Strand = Plus / Plus Query: 273 ccttcctttttggtttgaacccttgcggaaccaaagaagtatggtatcttcagcgaggac 332 ||||||||| |||||| || || ||||||||| |||| |||||||||||||| || || Sbjct: 55009 ccttcctttggggtttgttcctttacggaaccaatgaagaatggtatcttcagccagcac 55068 Query: 333 atcttgatcatacagagatcttataatttcagggaacagcttcatcaacttagcgtcctc 392 ||| || ||||| |||||||| ||||| ||||||||||||||||||| |||||| ||||| Sbjct: 55069 atcctgttcataaagagatctaataatctcagggaacagcttcatcagcttagcatcctc 55128 Query: 393 ataacactgtgtctggaccttgtatatgagttccagttctagctttccacttgtgca 449 ||| || || |||| || ||||| || || ||||| || || |||||||| ||||| Sbjct: 55129 atagcattgcatctgtactttgtacatcagctccagctcaagttttccactggtgca 55185
>ref|NM_123014.2| Arabidopsis thaliana translation initiation factor AT5G36230 mRNA, complete cds Length = 1600 Score = 63.9 bits (32), Expect = 6e-07 Identities = 89/108 (82%) Strand = Plus / Minus Query: 504 attttgctgctgattctttccagaccactgaacagcctccataagcacatcccacagcat 563 |||||||||||| || |||||||||||||||||||| ||||| | ||||||| | | Sbjct: 1074 attttgctgctggttttttccagaccactgaacagcatccattaaaccatcccaaacaac 1015 Query: 564 gcgaacaacctctatatcaggaaatttagcatctttaacctgttgctt 611 || |||||||| || ||||| || ||||||||||| | ||||||||| Sbjct: 1014 acgcacaacctcaatgtcaggtaacttagcatctttgatctgttgctt 967
>gb|AY136473.1| Arabidopsis thaliana putative protein (At5g36230) mRNA, complete cds Length = 1594 Score = 63.9 bits (32), Expect = 6e-07 Identities = 89/108 (82%) Strand = Plus / Minus Query: 504 attttgctgctgattctttccagaccactgaacagcctccataagcacatcccacagcat 563 |||||||||||| || |||||||||||||||||||| ||||| | ||||||| | | Sbjct: 1070 attttgctgctggttttttccagaccactgaacagcatccattaaaccatcccaaacaac 1011 Query: 564 gcgaacaacctctatatcaggaaatttagcatctttaacctgttgctt 611 || |||||||| || ||||| || ||||||||||| | ||||||||| Sbjct: 1010 acgcacaacctcaatgtcaggtaacttagcatctttgatctgttgctt 963
>gb|AY057642.1| Arabidopsis thaliana AT5g36230/T30G6_9 mRNA, complete cds Length = 1611 Score = 63.9 bits (32), Expect = 6e-07 Identities = 89/108 (82%) Strand = Plus / Minus Query: 504 attttgctgctgattctttccagaccactgaacagcctccataagcacatcccacagcat 563 |||||||||||| || |||||||||||||||||||| ||||| | ||||||| | | Sbjct: 1073 attttgctgctggttttttccagaccactgaacagcatccattaaaccatcccaaacaac 1014 Query: 564 gcgaacaacctctatatcaggaaatttagcatctttaacctgttgctt 611 || |||||||| || ||||| || ||||||||||| | ||||||||| Sbjct: 1013 acgcacaacctcaatgtcaggtaacttagcatctttgatctgttgctt 966
>dbj|AB026661.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:T30G6 Length = 76994 Score = 63.9 bits (32), Expect = 6e-07 Identities = 89/108 (82%) Strand = Plus / Minus Query: 504 attttgctgctgattctttccagaccactgaacagcctccataagcacatcccacagcat 563 |||||||||||| || |||||||||||||||||||| ||||| | ||||||| | | Sbjct: 30743 attttgctgctggttttttccagaccactgaacagcatccattaaaccatcccaaacaac 30684 Query: 564 gcgaacaacctctatatcaggaaatttagcatctttaacctgttgctt 611 || |||||||| || ||||| || ||||||||||| | ||||||||| Sbjct: 30683 acgcacaacctcaatgtcaggtaacttagcatctttgatctgttgctt 30636
>gb|AC095017.1| Drosophila melanogaster, chromosome 3R, region 89E-89E, BAC clone BACR28H01, complete sequence Length = 148642 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Plus Query: 114 tgctcacatgtgaaaaataaaatgttat 141 ||||||||||||||||||||| |||||| Sbjct: 121531 tgctcacatgtgaaaaataaattgttat 121558
>gb|AE003714.2| Drosophila melanogaster chromosome 3R, section 52 of 118 of the complete sequence Length = 231130 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Minus Query: 114 tgctcacatgtgaaaaataaaatgttat 141 ||||||||||||||||||||| |||||| Sbjct: 124500 tgctcacatgtgaaaaataaattgttat 124473
>gb|L48177.1|L48177 Drosophila melanogaster DNA sequence (P1 DS03126 (D5)), complete sequence Length = 97852 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Minus Query: 114 tgctcacatgtgaaaaataaaatgttat 141 ||||||||||||||||||||| |||||| Sbjct: 42875 tgctcacatgtgaaaaataaattgttat 42848
>gb|U31961.1|DMU31961 Drosophila melanogaster bithorax complex (BX-C), complete sequence Length = 338234 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Plus Query: 114 tgctcacatgtgaaaaataaaatgttat 141 ||||||||||||||||||||| |||||| Sbjct: 284145 tgctcacatgtgaaaaataaattgttat 284172
>ref|XM_369796.1| Magnaporthe grisea 70-15 hypothetical protein (MG06311.4) partial mRNA Length = 456 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 211 tcttcctcctctgcctcctcaa 232 |||||||||||||||||||||| Sbjct: 128 tcttcctcctctgcctcctcaa 107
>ref|XM_419671.1| PREDICTED: Gallus gallus similar to Pleckstrin homology domain containing family G member 1 (LOC421632), mRNA Length = 6941 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 212 cttcctcctctgcctcctcaag 233 |||||||||||||||||||||| Sbjct: 563 cttcctcctctgcctcctcaag 584
>ref|NM_001002854.1| Rattus norvegicus tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 (Tanc1), mRNA Length = 5819 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 211 tcttcctcctctgcctcctcaa 232 |||||||||||||||||||||| Sbjct: 4480 tcttcctcctctgcctcctcaa 4459
>emb|AL161916.8| Human DNA sequence from clone RP4-636O23 on chromosome 1p31.3-32.2 Contains the 3' end of gene MGC35130, complete sequence Length = 99249 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 488 gaagtgctgaattagaattttg 509 |||||||||||||||||||||| Sbjct: 70060 gaagtgctgaattagaattttg 70039
>dbj|AB098072.1| Rattus norvegicus TANC mRNA for TPR domain, ankyrin-repeat and coiled-coil-containing protein, complete cds Length = 5819 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 211 tcttcctcctctgcctcctcaa 232 |||||||||||||||||||||| Sbjct: 4480 tcttcctcctctgcctcctcaa 4459
>gb|AC073254.6| Homo sapiens BAC clone RP11-176L22 from 2, complete sequence Length = 83528 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 212 cttcctcctctgcctcctcaag 233 |||||||||||||||||||||| Sbjct: 43437 cttcctcctctgcctcctcaag 43458
>gb|AC165317.8| Mus musculus chromosome 5, clone RP23-265O20, complete sequence Length = 190857 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 ttcttcctcctctgcctcctc 230 ||||||||||||||||||||| Sbjct: 100019 ttcttcctcctctgcctcctc 99999
>gb|AC005997.3| Homo sapiens PAC clone RP4-558L10 from 7, complete sequence Length = 143250 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 cagagatcttataatttcagg 365 ||||||||||||||||||||| Sbjct: 35633 cagagatcttataatttcagg 35653
>gb|AC142349.1| Pan troglodytes BAC clone RP43-9F6 from 7, complete sequence Length = 192143 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 cagagatcttataatttcagg 365 ||||||||||||||||||||| Sbjct: 130217 cagagatcttataatttcagg 130237
>emb|AL592299.6| Human DNA sequence from clone RP11-498P10 on chromosome 1 Contains the 3' end of the RGL1 gene for ral guanine nucleotide dissociation stimulator-like 1 and the 3' end of the C1orf17 gene for chromosome 1 open reading frame 17, complete sequence Length = 79210 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 ttcttcctcctctgcctcctc 230 ||||||||||||||||||||| Sbjct: 35529 ttcttcctcctctgcctcctc 35509
>emb|AL591496.13| Mouse DNA sequence from clone RP23-384C18 on chromosome 11 Contains the 3' end of a novel gene, five novel genes, the Serpinf1 and Serpinf2 genes for serine (or cysteine) proteinase inhibitor, clade F) members 1 and 2, an H+ transporting mitochondrial F0 complex ATP synthase subunit c (subunit 9) isoform 1 (Atp5g1) pseudogene, the Prpf8 gene for pre-mRNA processing factor 8, the gene for the ortholog of human scavenger receptor class F member 1 SCARF1, the 5' end of the gene for novel protein similar to solute carrier family 43 member 1 Slc43a1 and seven CpG islands, complete sequence Length = 205633 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 ttcttcctcctctgcctcctc 230 ||||||||||||||||||||| Sbjct: 164493 ttcttcctcctctgcctcctc 164473
>gb|AC002121.1| Genomic sequence from Mouse 11, complete sequence Length = 84056 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 ttcttcctcctctgcctcctc 230 ||||||||||||||||||||| Sbjct: 36054 ttcttcctcctctgcctcctc 36074
>gb|AC112219.2| Homo sapiens chromosome 3 clone RP11-433A10, complete sequence Length = 155472 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 ttcctttttggtttgaaccct 295 ||||||||||||||||||||| Sbjct: 130081 ttcctttttggtttgaaccct 130101
>gb|AC090588.5| Homo sapiens chromosome 11, clone RP11-384E5, complete sequence Length = 152572 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 ctttgcataaatatcctgtaa 33 ||||||||||||||||||||| Sbjct: 46297 ctttgcataaatatcctgtaa 46277
>ref|NM_001024309.1| Rattus norvegicus similar to RIKEN cDNA C430004E15 (LOC499749), mRNA Length = 2095 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 ttcttcctcctctgcctcctc 230 ||||||||||||||||||||| Sbjct: 1296 ttcttcctcctctgcctcctc 1276
>gb|BC083928.1| Rattus norvegicus similar to RIKEN cDNA C430004E15, mRNA (cDNA clone MGC:95335 IMAGE:7135551), complete cds Length = 2095 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 ttcttcctcctctgcctcctc 230 ||||||||||||||||||||| Sbjct: 1296 ttcttcctcctctgcctcctc 1276
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 tgtgaaaaataaaatgttatg 142 ||||||||||||||||||||| Sbjct: 9608598 tgtgaaaaataaaatgttatg 9608618
>gb|AC093873.2| Homo sapiens BAC clone RP11-615B17 from 2, complete sequence Length = 210320 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 ttcttcctcctctgcctcctc 230 ||||||||||||||||||||| Sbjct: 18682 ttcttcctcctctgcctcctc 18662
>dbj|AP006465.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1059D01 Length = 158792 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 tgtgaaaaataaaatgttatg 142 ||||||||||||||||||||| Sbjct: 116328 tgtgaaaaataaaatgttatg 116348
>dbj|AP005834.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0005C24 Length = 168151 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 tgtgaaaaataaaatgttatg 142 ||||||||||||||||||||| Sbjct: 9061 tgtgaaaaataaaatgttatg 9081
>emb|AL807247.10| Mouse DNA sequence from clone RP23-178D3 on chromosome 4, complete sequence Length = 184686 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 ttcttcctcctctgcctcctc 230 ||||||||||||||||||||| Sbjct: 32733 ttcttcctcctctgcctcctc 32713
>emb|AL645827.9| Mouse DNA sequence from clone RP23-443O6 on chromosome 2, complete sequence Length = 76691 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 ttcttcctcctctgcctcctc 230 ||||||||||||||||||||| Sbjct: 53502 ttcttcctcctctgcctcctc 53482
>ref|NM_180171.2| Arabidopsis thaliana phosphogluconate dehydrogenase (decarboxylating) AT3G02360 transcript variant AT3G02360.2 mRNA, complete cds Length = 1929 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 aagattgccttcctttttgg 285 |||||||||||||||||||| Sbjct: 441 aagattgccttcctttttgg 422
>ref|NM_111103.4| Arabidopsis thaliana phosphogluconate dehydrogenase (decarboxylating) AT3G02360 transcript variant AT3G02360.1 mRNA, complete cds Length = 1774 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 aagattgccttcctttttgg 285 |||||||||||||||||||| Sbjct: 286 aagattgccttcctttttgg 267
>gb|AC102166.13| Mus musculus chromosome 1, clone RP23-447B15, complete sequence Length = 182043 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 tgtgaaaaataaaatgttat 141 |||||||||||||||||||| Sbjct: 64328 tgtgaaaaataaaatgttat 64347
>gb|BC040674.1| Homo sapiens neurofascin, mRNA (cDNA clone IMAGE:4817018) Length = 4919 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 cttcctcctctgcctcctca 231 |||||||||||||||||||| Sbjct: 372 cttcctcctctgcctcctca 391
>ref|XM_514129.1| PREDICTED: Pan troglodytes similar to ankyrin binding cell adhesion molecule neurofascin (LOC457660), mRNA Length = 4093 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 cttcctcctctgcctcctca 231 |||||||||||||||||||| Sbjct: 1218 cttcctcctctgcctcctca 1237
>gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence Length = 1254 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 ttcttcctcctctgcctcctcaag 233 ||||||||||||| |||||||||| Sbjct: 245 ttcttcctcctctacctcctcaag 222
>gb|AC162171.7| Mus musculus chromosome 5, clone RP23-143N11, complete sequence Length = 229553 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 166836 tcttcctcctctgcctcctc 166855
>ref|XM_461779.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G06017g) partial mRNA Length = 747 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 423 ttccagttctagctttccacttgt 446 ||||||||||||||||| |||||| Sbjct: 730 ttccagttctagctttcgacttgt 707
>gb|AC109232.17| Mus musculus chromosome 7, clone RP23-423P21, complete sequence Length = 201262 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 77398 tcttcctcctctgcctcctc 77417
>gb|AC157994.2| Mus musculus BAC clone RP24-349B6 from chromosome 9, complete sequence Length = 226187 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 103340 tcttcctcctctgcctcctc 103359
>gb|AC110235.13| Mus musculus chromosome 9, clone RP23-100M12, complete sequence Length = 220755 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 42727 tcttcctcctctgcctcctc 42746
>gb|AF117829.3| Homo sapiens chromosome 8 multiple clones map q21.3, complete sequence Length = 320187 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 tgaaaaataaaatgttatgt 143 |||||||||||||||||||| Sbjct: 153994 tgaaaaataaaatgttatgt 154013
>gb|AC130969.4| Rattus norvegicus 2 BAC CH230-105B13 (Children's Hospital Oakland Research Institute) complete sequence Length = 238254 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 ttattcttcctcctctgcctcctc 230 |||||||||||||||| ||||||| Sbjct: 160821 ttattcttcctcctcttcctcctc 160798
>gb|AC126938.2| Mus musculus BAC clone RP23-50I16 from chromosome 5, complete sequence Length = 187269 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 167237 tcttcctcctctgcctcctc 167218
>emb|CT025565.5| Mouse DNA sequence from clone RP24-126K5 on chromosome 17, complete sequence Length = 175523 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 23800 tcttcctcctctgcctcctc 23819
>ref|XM_568751.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNB00050) partial mRNA Length = 5912 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 5615 tcttcctcctctgcctcctc 5596
>gb|AC123034.5| Mus musculus BAC clone RP24-484E17 from chromosome 13, complete sequence Length = 177675 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 aaggaaatactcattttaaa 189 |||||||||||||||||||| Sbjct: 147871 aaggaaatactcattttaaa 147852
>emb|CR730146.1|CNS0GQBS Tetraodon nigroviridis full-length cDNA Length = 1020 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 438 tcttcctcctctgcctcctc 419
>emb|CR727229.2|CNS0GO2R Tetraodon nigroviridis full-length cDNA Length = 1002 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 411 tcttcctcctctgcctcctc 392
>emb|CR681313.2|CNS0FONH Tetraodon nigroviridis full-length cDNA Length = 603 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 408 tcttcctcctctgcctcctc 389
>gb|AC161221.7| Mus musculus chromosome 1, clone RP24-228M19, complete sequence Length = 164548 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 101480 tcttcctcctctgcctcctc 101499
>gb|AC161366.6| Mus musculus BAC clone RP24-230D17 from chromosome 9, complete sequence Length = 155733 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 1240 tcttcctcctctgcctcctc 1221
>emb|AL512328.15| Human DNA sequence from clone RP11-505D24 on chromosome 1 Contains the 5' end of the AGT gene for angiotensinogen (serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 8), the 5' end of the CAPN9 gene for calpain 9 (nCL-4) and the 3' end of a variant of a novel gene, complete sequence Length = 55722 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 206 tttattcttcctcctctgcctcct 229 ||||||||||||||||| |||||| Sbjct: 6593 tttattcttcctcctcttcctcct 6616
>emb|AL513023.12| Human DNA sequence from clone RP11-256A6 on chromosome 6, complete sequence Length = 165699 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 gtgaaaaataaaatgttatg 142 |||||||||||||||||||| Sbjct: 34218 gtgaaaaataaaatgttatg 34199
>emb|AL391822.12| Human DNA sequence from clone RP11-494K3 on chromosome 1 Contains the 3' end of the gene for neurofascin (NFASC) and a ribosomal protein L13a (RPL13A) pseudogene, complete sequence Length = 115292 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 cttcctcctctgcctcctca 231 |||||||||||||||||||| Sbjct: 33154 cttcctcctctgcctcctca 33173
>emb|AL355392.7| Human DNA sequence from clone RP5-1187J4 on chromosome 20q11.1-11.23 Contains the gene for a novel protein similar to mouse von Ebner salivary gland protein, a novel pseudogene, the gene for a novel protein similar to rat RYF3, the CDK5RAP1 gene for CDK5 regulatory subunit associated protein 1, the SNTA1 gene for alpha syntrophin (dystrophin-associated protein A1, 59kD, acidic component) and two CpG islands, complete sequence Length = 159440 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ttcttcctcctctgcctcct 229 |||||||||||||||||||| Sbjct: 63358 ttcttcctcctctgcctcct 63339
>gb|AC069113.9| Homo sapiens chromosome 8, clone RP11-597M17, complete sequence Length = 197616 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 attcttcctcctctgcctcc 228 |||||||||||||||||||| Sbjct: 36457 attcttcctcctctgcctcc 36476
>gb|AC090099.14| Homo sapiens chromosome 11, clone RP11-113D6, complete sequence Length = 172939 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 atgtgaaaaataaaatgtta 140 |||||||||||||||||||| Sbjct: 107252 atgtgaaaaataaaatgtta 107271
>gb|AF271405.5| Homo sapiens chromosome 8 clone SCb-554J4 map p21-p11, complete sequence Length = 109761 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 attcttcctcctctgcctcc 228 |||||||||||||||||||| Sbjct: 88742 attcttcctcctctgcctcc 88761
>gb|AF217759.5| Homo sapiens chromosome 8 clone GS1-45G16 map p21-p11, complete sequence Length = 83359 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 attcttcctcctctgcctcc 228 |||||||||||||||||||| Sbjct: 63084 attcttcctcctctgcctcc 63103
>emb|AL035251.11|HS705O1 Human DNA sequence from clone RP4-705O1 on chromosome 20q11.2 Contains a novel gene, complete sequence Length = 161888 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 135036 tcttcctcctctgcctcctc 135055
>emb|AL022165.1|HS71L16 Human DNA sequence from clone RP1-71L16 on chromosome Xp11 Contains a pseudogene similar to part of novel gene (FLJ20344), a novel gene, the CHST7 gene for carbohydrate (N-acetylglucosamine 6-O) ulfotransferase 7 (C6ST-2), the 3' end of the SLC9A7 gene for solute carrier family 9 (sodium/hydrogen exchanger), isoform 7 (NHE7), a pseudogene similar to part of germ cell specific Y-box binding protein (YBX2) and two CpG islands, complete sequence Length = 176433 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 450 aaatgcattcataagaccagccca 473 |||||||||| ||||||||||||| Sbjct: 112132 aaatgcattcctaagaccagccca 112109
>gb|AC112161.9| Mus Musculus chromosome 9 BAC clone MGS1-117K9 ES cell line, Complete Sequence, complete sequence Length = 115135 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 80955 tcttcctcctctgcctcctc 80936
>ref|XM_793159.1| PREDICTED: Strongylocentrotus purpuratus similar to sterile alpha motif domain containing 9 (LOC593689), partial mRNA Length = 4002 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 605 gttgcttgacaacctcagtt 624 |||||||||||||||||||| Sbjct: 2119 gttgcttgacaacctcagtt 2100
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 423 ttccagttctagctttccacttgt 446 ||||||||||||||||| |||||| Sbjct: 463910 ttccagttctagctttcgacttgt 463933
>gb|AY436323.1| Homo sapiens angiotensinogen (serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 8) (AGT) gene, complete cds Length = 15593 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 206 tttattcttcctcctctgcctcct 229 ||||||||||||||||| |||||| Sbjct: 8683 tttattcttcctcctcttcctcct 8660
>gb|AC108007.5| Homo sapiens chromosome 11, clone CTD-3038L12, complete sequence Length = 91923 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 atgtgaaaaataaaatgtta 140 |||||||||||||||||||| Sbjct: 2784 atgtgaaaaataaaatgtta 2803
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 9218 tcttcctcctctgcctcctc 9237
>gb|AC152395.9| Mus musculus chromosome 15, clone RP23-391D2, complete sequence Length = 210006 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 tgtgcaaaatgcattcataa 463 |||||||||||||||||||| Sbjct: 59116 tgtgcaaaatgcattcataa 59097
>gb|AC023711.5| Drosophila melanogaster X BAC RP98-6C4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174157 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 ttgacgaaaggctccagagc 257 |||||||||||||||||||| Sbjct: 25510 ttgacgaaaggctccagagc 25491
>gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, complete sequence Length = 214098 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 138154 tcttcctcctctgcctcctc 138173
>gb|AC104511.5| Drosophila melanogaster X BAC RP98-39D14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 166000 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 ttgacgaaaggctccagagc 257 |||||||||||||||||||| Sbjct: 12953 ttgacgaaaggctccagagc 12972
>gb|AC023685.4| Drosophila melanogaster 3L BAC RP98-20N12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167926 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 ttgacgaaaggctccagagc 257 |||||||||||||||||||| Sbjct: 54923 ttgacgaaaggctccagagc 54904
>dbj|AK090639.1| Homo sapiens cDNA FLJ33320 fis, clone BNGH42007798, highly similar to Rattus norvegicus ankyrin binding cell adhesion molecule neurofascin mRNA Length = 2462 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 cttcctcctctgcctcctca 231 |||||||||||||||||||| Sbjct: 326 cttcctcctctgcctcctca 345
>gb|AC027031.5| Homo sapiens chromosome 8, clone RP11-778D12, complete sequence Length = 175125 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tctgcctcctcaagccattt 239 |||||||||||||||||||| Sbjct: 81959 tctgcctcctcaagccattt 81978
>ref|NM_015090.2| Homo sapiens neurofascin homolog (chicken) (NFASC), mRNA Length = 10079 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 cttcctcctctgcctcctca 231 |||||||||||||||||||| Sbjct: 326 cttcctcctctgcctcctca 345
>gb|AC022889.8| Homo sapiens chromosome 15, clone RP11-492D5, complete sequence Length = 108652 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 gacagcaatgctcacatgtgaaaa 129 ||||||||||||||||| |||||| Sbjct: 55157 gacagcaatgctcacatttgaaaa 55180
>gb|AC104420.2| Homo sapiens chromosome 15, clone RP11-945A13, complete sequence Length = 178756 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 gacagcaatgctcacatgtgaaaa 129 ||||||||||||||||| |||||| Sbjct: 157863 gacagcaatgctcacatttgaaaa 157886
>gb|AC023061.4| Homo sapiens chromosome 5 clone RP1-59F3, complete sequence Length = 88200 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 cttcctcctctgcctcctca 231 |||||||||||||||||||| Sbjct: 68962 cttcctcctctgcctcctca 68943
>gb|AC107392.6| Homo sapiens BAC clone RP11-578K15 from 4, complete sequence Length = 93331 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 17669 tcttcctcctctgcctcctc 17688
>gb|AC104997.4| Homo sapiens chromosome 8, clone RP11-1149M3, complete sequence Length = 144859 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 attcttcctcctctgcctcc 228 |||||||||||||||||||| Sbjct: 29132 attcttcctcctctgcctcc 29113
>gb|AC073917.19| Homo sapiens 12q BAC RP11-415D21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163836 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 atgtgaaaaataaaatgtta 140 |||||||||||||||||||| Sbjct: 107611 atgtgaaaaataaaatgtta 107592
>gb|AC092671.2| Homo sapiens BAC clone RP11-598I5 from 4, complete sequence Length = 164229 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 attcttcctcctctgcctcc 228 |||||||||||||||||||| Sbjct: 73539 attcttcctcctctgcctcc 73558
>gb|AC096757.3| Homo sapiens BAC clone RP11-543H9 from 4, complete sequence Length = 188464 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 500 tagaattttgctgctgattctttc 523 ||||||| |||||||||||||||| Sbjct: 32165 tagaattctgctgctgattctttc 32188
>gb|AC068397.6| Homo sapiens chromosome 15, clone RP11-272D12, complete sequence Length = 169892 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 gacagcaatgctcacatgtgaaaa 129 ||||||||||||||||| |||||| Sbjct: 36101 gacagcaatgctcacatttgaaaa 36124
>gb|AC026241.7| Homo sapiens, clone RP11-698O20, complete sequence Length = 196145 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 600 aacctgttgcttgacaacct 619 |||||||||||||||||||| Sbjct: 66543 aacctgttgcttgacaacct 66524
>gb|AC159144.4| Medicago truncatula chromosome 7 BAC clone mth2-41a4, complete sequence Length = 55550 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 gcataaatatcctgtaacaactag 40 ||||||| |||||||||||||||| Sbjct: 38763 gcataaagatcctgtaacaactag 38786
>gb|AF424591.1|AF424591 Arabidopsis thaliana AT3g02360/F11A12_104 mRNA, complete cds Length = 1681 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 aagattgccttcctttttgg 285 |||||||||||||||||||| Sbjct: 264 aagattgccttcctttttgg 245
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 ctctttattcttcctcctct 222 |||||||||||||||||||| Sbjct: 2645271 ctctttattcttcctcctct 2645290
>dbj|AB018299.3| Homo sapiens mRNA for KIAA0756 protein, partial cds Length = 9959 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 cttcctcctctgcctcctca 231 |||||||||||||||||||| Sbjct: 198 cttcctcctctgcctcctca 217
>gb|AC073532.18|AC073532 Homo sapiens 12 BAC RP11-150F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 143759 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 atgtgaaaaataaaatgtta 140 |||||||||||||||||||| Sbjct: 90615 atgtgaaaaataaaatgtta 90596
>gb|AC068900.3|AC068900 Arabidopsis thaliana chromosome 3 BAC F11A12 genomic sequence, complete sequence Length = 22087 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 aagattgccttcctttttgg 285 |||||||||||||||||||| Sbjct: 13190 aagattgccttcctttttgg 13171
>gb|AC011298.7| Homo sapiens BAC clone RP11-118M12 from 2, complete sequence Length = 174221 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 attcttcctcctctgcctcc 228 |||||||||||||||||||| Sbjct: 151351 attcttcctcctctgcctcc 151332
>gb|AY087341.1| Arabidopsis thaliana clone 34412 mRNA, complete sequence Length = 1753 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 aagattgccttcctttttgg 285 |||||||||||||||||||| Sbjct: 268 aagattgccttcctttttgg 249
>ref|XM_237297.3| PREDICTED: Rattus norvegicus similar to hypothetical protein DKFZp434O0527 (LOC301521), mRNA Length = 4197 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 3770 tcttcctcctctgcctcctc 3751 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 3752 tcttcctcctctgcctcctc 3733
>gb|AC112784.5| Homo sapiens BAC clone RP13-555N8 from 2, complete sequence Length = 196451 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 attcttcctcctctgcctcc 228 |||||||||||||||||||| Sbjct: 196313 attcttcctcctctgcctcc 196294
>gb|BT002299.1| Arabidopsis thaliana At3g02360/F11A12_104 mRNA, complete cds Length = 1461 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 aagattgccttcctttttgg 285 |||||||||||||||||||| Sbjct: 162 aagattgccttcctttttgg 143
>dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0434B04 Length = 167029 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 ctctttattcttcctcctct 222 |||||||||||||||||||| Sbjct: 95046 ctctttattcttcctcctct 95065
>gb|AC004003.1|AC004003 Homo sapiens BAC clone CTA-437L15 from 8q21, complete sequence Length = 116650 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 tgaaaaataaaatgttatgt 143 |||||||||||||||||||| Sbjct: 14464 tgaaaaataaaatgttatgt 14483
>emb|CR762386.16| Zebrafish DNA sequence from clone CH211-243A15 in linkage group 2, complete sequence Length = 160796 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 gcataaatatcctgtaacaa 36 |||||||||||||||||||| Sbjct: 79972 gcataaatatcctgtaacaa 79953
>emb|BX255939.3| Zebrafish DNA sequence from clone DKEY-5G7 in linkage group 20, complete sequence Length = 168897 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 tgctcacatgtgaaaaataa 133 |||||||||||||||||||| Sbjct: 22073 tgctcacatgtgaaaaataa 22054
>gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 of 74 of the complete sequence Length = 332030 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 ttgacgaaaggctccagagc 257 |||||||||||||||||||| Sbjct: 111609 ttgacgaaaggctccagagc 111590
>emb|AJ544609.1|TRU544609 Takifugu rubripes dmd gene for putative dystrophin, exons 2-20 Length = 39735 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 ttcctcctctgcctcctcaa 232 |||||||||||||||||||| Sbjct: 19892 ttcctcctctgcctcctcaa 19911
>gb|AC156028.2| Mus musculus BAC clone RP23-61A11 from chromosome 8, complete sequence Length = 212724 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 ttattcttcctcctctgcctcctc 230 |||||||||||||||| ||||||| Sbjct: 8609 ttattcttcctcctcttcctcctc 8632
>emb|AL929146.10| Zebrafish DNA sequence from clone CH211-117A23, complete sequence Length = 169102 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 gcataaatatcctgtaacaa 36 |||||||||||||||||||| Sbjct: 124468 gcataaatatcctgtaacaa 124487
>gb|AC134525.5| Mus musculus BAC clone RP24-496F7 from 8, complete sequence Length = 215900 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 ttattcttcctcctctgcctcctc 230 |||||||||||||||| ||||||| Sbjct: 30719 ttattcttcctcctcttcctcctc 30696
>gb|AC133188.4| Mus musculus BAC clone RP23-330F6 from 13, complete sequence Length = 201730 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 aaggaaatactcattttaaa 189 |||||||||||||||||||| Sbjct: 25902 aaggaaatactcattttaaa 25883
>gb|DQ304649.1| Homo sapiens anaphase promoting complex subunit 10 (ANAPC10) gene, complete cds Length = 106979 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 500 tagaattttgctgctgattctttc 523 ||||||| |||||||||||||||| Sbjct: 34928 tagaattctgctgctgattctttc 34905
>gb|AC158950.3| Mus musculus chromosome 1, clone RP24-215K13, complete sequence Length = 208060 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 tgtgaaaaataaaatgttat 141 |||||||||||||||||||| Sbjct: 89307 tgtgaaaaataaaatgttat 89288
>emb|AL807830.10| Mouse DNA sequence from clone RP23-303I9 on chromosome 4, complete sequence Length = 79426 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 34852 tcttcctcctctgcctcctc 34871
>emb|AL845162.9| Mouse DNA sequence from clone RP23-35I8 on chromosome 2, complete sequence Length = 189829 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 95731 tcttcctcctctgcctcctc 95712
>dbj|AB031082.1| Mus musculus MK gene for TRAIL receptor2 KILLER/DR5 homologue, complete cds Length = 20696 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 tcttcctcctctgcctcctc 230 |||||||||||||||||||| Sbjct: 20643 tcttcctcctctgcctcctc 20662
>dbj|AP003694.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1931E2, complete sequence Length = 159287 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tctgcctcctcaagccattt 239 |||||||||||||||||||| Sbjct: 126215 tctgcctcctcaagccattt 126196 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,515,387 Number of Sequences: 3902068 Number of extensions: 7515387 Number of successful extensions: 157210 Number of sequences better than 10.0: 122 Number of HSP's better than 10.0 without gapping: 122 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 156695 Number of HSP's gapped (non-prelim): 515 length of query: 625 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 602 effective length of database: 17,143,297,704 effective search space: 10320265217808 effective search space used: 10320265217808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)