Clone Name | rbasd19l05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK068933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002N22, full insert sequence Length = 1157 Score = 414 bits (209), Expect = e-112 Identities = 479/569 (84%) Strand = Plus / Minus Query: 138 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 197 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 968 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 909 Query: 198 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 257 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 908 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 849 Query: 258 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 317 | ||| |||| ||||| || || |||||||||||||||| ||| ||||||||||||| Sbjct: 848 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 789 Query: 318 cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 377 ||||||||||||||| ||| || | | | |||||||| ||||||||||||||||||| Sbjct: 788 cattgttcctgagttcagattcatcttcatcacaccaccagccattcccctgaacccatt 729 Query: 378 ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 437 ||||||||||||| | ||||| | ||||||||||| ||||| |||||||| |||||| Sbjct: 728 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 669 Query: 438 tgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcga 497 |||| ||||||||||| ||||||||||||||||||||||| ||||| |||| ||||| | Sbjct: 668 tgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagtcagtgcctcaa 609 Query: 498 ttaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtaca 557 |||||| ||||||||||| | ||||||||||||| ||| ||||| ||||||||||||| Sbjct: 608 ctaaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtaca 549 Query: 558 cagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccggg 617 ||||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| Sbjct: 548 cagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacgga 489 Query: 618 taacaactccgtcacttctgaactgttcggcggttggggtgctgattgcccacccattgt 677 ||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 488 taacagctccatcacttctgaactgttcactagttggggtgctgattgcccagccattgt 429 Query: 678 tgcggcagaagaagatcatcggtgcttcc 706 |||||||||||||||||| ||| |||||| Sbjct: 428 tgcggcagaagaagatcaccggcgcttcc 400
>dbj|AK064862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I03, full insert sequence Length = 1725 Score = 414 bits (209), Expect = e-112 Identities = 479/569 (84%) Strand = Plus / Minus Query: 138 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 197 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 1634 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 1575 Query: 198 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 257 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 1574 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 1515 Query: 258 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 317 | ||| |||| ||||| || || |||||||||||||||| ||| ||||||||||||| Sbjct: 1514 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 1455 Query: 318 cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 377 ||||||||||||||| ||| || | | | |||||||| ||||||||||||||||||| Sbjct: 1454 cattgttcctgagttcagattcatcttcatcacaccaccagccattcccctgaacccatt 1395 Query: 378 ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 437 ||||||||||||| | ||||| | ||||||||||| ||||| |||||||| |||||| Sbjct: 1394 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 1335 Query: 438 tgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcga 497 |||| ||||||||||| ||||||||||||||||||||||| ||||| |||| ||||| | Sbjct: 1334 tgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagtcagtgcctcaa 1275 Query: 498 ttaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtaca 557 |||||| ||||||||||| | ||||||||||||| ||| ||||| ||||||||||||| Sbjct: 1274 ctaaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtaca 1215 Query: 558 cagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccggg 617 ||||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| Sbjct: 1214 cagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacgga 1155 Query: 618 taacaactccgtcacttctgaactgttcggcggttggggtgctgattgcccacccattgt 677 ||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 1154 taacagctccatcacttctgaactgttcactagttggggtgctgattgcccagccattgt 1095 Query: 678 tgcggcagaagaagatcatcggtgcttcc 706 |||||||||||||||||| ||| |||||| Sbjct: 1094 tgcggcagaagaagatcaccggcgcttcc 1066
>dbj|AK060732.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-A05, full insert sequence Length = 1705 Score = 414 bits (209), Expect = e-112 Identities = 479/569 (84%) Strand = Plus / Minus Query: 138 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 197 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 1560 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 1501 Query: 198 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 257 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 1500 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 1441 Query: 258 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctca 317 | ||| |||| ||||| || || |||||||||||||||| ||| ||||||||||||| Sbjct: 1440 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagctcttgcctca 1381 Query: 318 cattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccatt 377 ||||||||||||||| ||| || | | | |||||||| ||||||||||||||||||| Sbjct: 1380 cattgttcctgagttcagattcatcttcatcacaccaccaaccattcccctgaacccatt 1321 Query: 378 ttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggcc 437 ||||||||||||| | ||||| | ||||||||||| ||||| |||||||| |||||| Sbjct: 1320 ttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctcatcgaccggcc 1261 Query: 438 tgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcga 497 |||| ||||||||||| ||||||||||||||||||||||| ||||| |||| ||||| | Sbjct: 1260 tgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagtcagtgcctcaa 1201 Query: 498 ttaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtaca 557 |||||| ||||||||||| | ||||||||||||| ||| ||||| ||||||||||||| Sbjct: 1200 ctaaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtaca 1141 Query: 558 cagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccggg 617 ||||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| Sbjct: 1140 cagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacgga 1081 Query: 618 taacaactccgtcacttctgaactgttcggcggttggggtgctgattgcccacccattgt 677 ||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 1080 taacagctccatcacttctgaactgttcactagttggggtgctgattgcccagccattgt 1021 Query: 678 tgcggcagaagaagatcatcggtgcttcc 706 |||||||||||||||||| ||| |||||| Sbjct: 1020 tgcggcagaagaagatcaccggcgcttcc 992
>gb|AY106153.1| Zea mays PCO079304 mRNA sequence Length = 1709 Score = 281 bits (142), Expect = 2e-72 Identities = 462/566 (81%), Gaps = 2/566 (0%) Strand = Plus / Minus Query: 138 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 197 ||||||| || ||||||| || || |||||||||||||| |||| |||||| ||||| Sbjct: 1587 actaaacgggtacatcagttgggtagtctgcagggtgcctcatgattgtatcccgcagca 1528 Query: 198 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 257 | ||||||| | | |||||||||||||| | || |||||||| ||||| ||||| | Sbjct: 1527 attgctcttgttcatgcaggttggaagggatcttgtcgtaaacatcagtgaaaagctcag 1468 Query: 258 caagcccgtg-ttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctc 316 || | ||| ||||||||| || || || ||||| |||||||| || ||||||| ||| Sbjct: 1467 taa-ctggtggttttggcattctttctgcaacctggatggcttggagaagctcttttctc 1409 Query: 317 acattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccat 376 || || ||||||| | ||| |||| || | | ||||||| |||| |||||||||||| Sbjct: 1408 actctgctcctgagctcagattcttcagcatcagaccaccagtcattaccctgaacccat 1349 Query: 377 tttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggc 436 |||||||| ||||| | |||||||| ||||||||||||||||| ||||||||| | ||| Sbjct: 1348 tttctgtatctggaaatcggatccctcgctgttcgccaatgctcaatctcatcaactggc 1289 Query: 437 ctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcg 496 ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||| Sbjct: 1288 ctgtacttggtcgaatcatcggatgtcgagtgatggccgactcggtaagtcagtgcctca 1229 Query: 497 attaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtac 556 | |||||| || ||||||||||||| ||||||||| ||||| | || | ||| |||||| Sbjct: 1228 actaaaattggtcttccttcagttacagccatttctcgggcagcatggattgcgctgtac 1169 Query: 557 acagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgg 616 |||||||||| ||| ||||| |||| | ||| | || || || || ||||| || ||| Sbjct: 1168 acagcaagagcatcattgccatctactcggatgccacggatcccataagcctggccacgg 1109 Query: 617 gtaacaactccgtcacttctgaactgttcggcggttggggtgctgattgcccacccattg 676 |||||||||| ||||||||||| ||||| | || || |||||||| ||||| |||||| Sbjct: 1108 ataacaactccatcacttctgaattgttcagtagtcggagtgctgatggcccagccattg 1049 Query: 677 ttgcggcagaagaagatcatcggtgc 702 ||||||||||||||||||| |||||| Sbjct: 1048 ttgcggcagaagaagatcaccggtgc 1023
>gb|BT016632.1| Zea mays clone Contig465 mRNA sequence Length = 1349 Score = 268 bits (135), Expect = 2e-68 Identities = 455/559 (81%), Gaps = 2/559 (0%) Strand = Plus / Minus Query: 138 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 197 ||||||| || ||||||| || || |||||||||||||| |||| |||||| ||||| Sbjct: 1241 actaaacgggtacatcagttgggtagtctgcagggtgcctcatgattgtatcccgcagca 1182 Query: 198 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 257 | ||||||| | | |||||||||||||| | ||| |||||||| ||||| ||||| | Sbjct: 1181 attgctcttgttcatgcaggttggaagggatcttatcgtaaacatcagtgaaaagctcag 1122 Query: 258 caagcccgtg-ttttggcatcctctcggccacctgaatggcttgcaggagctcttgcctc 316 || | ||| ||||||||| || || || ||||| |||||||| || ||||||| ||| Sbjct: 1121 taa-ctggtggttttggcattctttctgcaacctggatggcttggagaagctcttttctc 1063 Query: 317 acattgttcctgagttgagactcttgagtaccgcaccaccatccattcccctgaacccat 376 || || ||||||| | ||| |||| || | | ||||||| |||| |||||||||||| Sbjct: 1062 actctgctcctgaggtcagattcttcagcatcagaccaccagtcattaccctgaacccat 1003 Query: 377 tttctgtacctggagacgggatcccttgctgttcgccaatgctccatctcatcagccggc 436 |||||||| ||||| | |||||||| ||||||||||||||||| ||||||||| | ||| Sbjct: 1002 tttctgtatctggaaattggatccctcgctgttcgccaatgctcaatctcatcaactggc 943 Query: 437 ctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcg 496 ||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||| Sbjct: 942 ctgtacttggtcgaatcatcggatgtcgagtgatggccgactcggtaagtcagtgcctca 883 Query: 497 attaaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtac 556 | |||||| || ||||||||||||| ||||||||| ||||| | || | ||| |||||| Sbjct: 882 actaaaattggtcttccttcagttacagccatttctcgggcagcatggattgcgctgtac 823 Query: 557 acagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgg 616 |||||||||| ||| ||||| |||| | ||| | || || || || ||||| || ||| Sbjct: 822 acagcaagagcatcattgccatctactcggatgccacggatcccataagcctggccacgg 763 Query: 617 gtaacaactccgtcacttctgaactgttcggcggttggggtgctgattgcccacccattg 676 | |||||||| ||||||||||| ||||| | || || |||||||| ||||| ||||| Sbjct: 762 atgacaactccatcacttctgaattgttcagtagtcggagtgctgatggcccagccatta 703 Query: 677 ttgcggcagaagaagatca 695 ||||||||||||||||||| Sbjct: 702 ttgcggcagaagaagatca 684
>gb|BT018525.1| Zea mays clone EL01N0432G12.d mRNA sequence Length = 1695 Score = 234 bits (118), Expect = 3e-58 Identities = 393/482 (81%), Gaps = 2/482 (0%) Strand = Plus / Minus Query: 215 aggttggaagggatttgatcataaacatctgtgaagagctccgcaagcccgtgttttggc 274 |||||||||||||| | ||| |||||||| ||||| ||||| | || | |||||||| Sbjct: 1454 aggttggaagggatcttatcgtaaacatcagtgaaaagctcagtaactgggggttttggc 1395 Query: 275 atcctctcggccacctgaatggcttgcaggagctcttgcctcacattgttcctgagttga 334 || || || || ||||| |||||||| || ||||||| ||||| || ||||||| | Sbjct: 1394 attctttctgcaacctggatggcttggagaagctcttttctcactctgctcctgagggca 1335 Query: 335 gactcttgagtaccgcaccaccatccattcccctgaacccattttctgtacctggagacg 394 || |||| || | | ||||||| |||| |||||||||||||||||||| ||||| | Sbjct: 1334 gattcttcagcatcagaccaccagtcattaccctgaacccattttctgtatctggaaatt 1275 Query: 395 ggatcccttgctgttcgccaatgctccatctcatcagccggcctgtacttggttgaatcg 454 |||||||| ||||||||||||||||| ||||||||| | |||||||||||||| ||||| Sbjct: 1274 ggatccctcgctgttcgccaatgctcaatctcatcaactggcctgtacttggtcgaatca 1215 Query: 455 tcggatgtcgagtgatggccgactcggtaggtcatcgcctcgattaaaataggccttcct 514 ||||||||||||||||||||||||||||| |||| ||||| | |||||| || |||||| Sbjct: 1214 tcggatgtcgagtgatggccgactcggtaagtcagtgcctcaactaaaattggtcttcct 1155 Query: 515 tcagttatagccatttcccgggcggtgtgcactgc-actgtacacagcaagagtatcgtt 573 ||||||| ||||||||| ||||| | || | ||| |||||||||||||||| ||| || Sbjct: 1154 tcagttacagccatttctcgggcagcatgga-tgcgcctgtacacagcaagagcatcatt 1096 Query: 574 gccgtctagcctgatactgcgtattccgtaggcctgaccccgggtaacaactccgtcact 633 ||| |||| | ||| | || || || || ||||| || ||| | |||||||| ||||| Sbjct: 1095 gccatctactcggatgccacggatcccataagcctggccacggatgacaactccatcact 1036 Query: 634 tctgaactgttcggcggttggggtgctgattgcccacccattgttgcggcagaagaagat 693 |||||| ||||| | || || |||||||| ||||| ||||| ||||||||||||||||| Sbjct: 1035 tctgaattgttcagtagtcggagtgctgatggcccagccattattgcggcagaagaagat 976 Query: 694 ca 695 || Sbjct: 975 ca 974
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 170 bits (86), Expect = 4e-39 Identities = 158/182 (86%) Strand = Plus / Minus Query: 307 ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 366 |||||||||||||||||||||||||| ||| || | | | |||||||| |||||||| Sbjct: 4211674 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 4211615 Query: 367 ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 426 |||||||||||||||||||||||| | ||||| | ||||||||||| ||||| ||||| Sbjct: 4211614 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 4211555 Query: 427 atcagccggcctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggt 486 ||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 4211554 atcgaccggcctgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagt 4211495 Query: 487 ca 488 || Sbjct: 4211494 ca 4211493 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Minus Query: 499 taaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtacac 558 |||||| ||||||||||| | ||||||||||||| ||| ||||| |||||||||||||| Sbjct: 4211413 taaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtacac 4211354 Query: 559 agcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgggt 618 |||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| | Sbjct: 4211353 agcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacggat 4211294 Query: 619 aacaactccgtcac 632 |||| |||| |||| Sbjct: 4211293 aacagctccatcac 4211280 Score = 95.6 bits (48), Expect = 2e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 631 acttctgaactgttcggcggttggggtgctgattgcccacccattgttgcggcagaagaa 690 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 4211198 acttctgaactgttcactagttggggtgctgattgcccagccattgttgcggcagaagaa 4211139 Query: 691 gatcatcggtgcttcc 706 ||||| ||| |||||| Sbjct: 4211138 gatcaccggcgcttcc 4211123 Score = 69.9 bits (35), Expect = 1e-08 Identities = 137/171 (80%) Strand = Plus / Minus Query: 138 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 197 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 4211930 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 4211871 Query: 198 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 257 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 4211870 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 4211811 Query: 258 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagct 308 | ||| |||| ||||| || || |||||||||||||||| ||| |||| Sbjct: 4211810 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagct 4211760
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 170 bits (86), Expect = 4e-39 Identities = 158/182 (86%) Strand = Plus / Minus Query: 307 ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 366 |||||||||||||||||||||||||| ||| || | | | |||||||| |||||||| Sbjct: 4211661 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 4211602 Query: 367 ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 426 |||||||||||||||||||||||| | ||||| | ||||||||||| ||||| ||||| Sbjct: 4211601 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 4211542 Query: 427 atcagccggcctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggt 486 ||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 4211541 atcgaccggcctgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagt 4211482 Query: 487 ca 488 || Sbjct: 4211481 ca 4211480 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Minus Query: 499 taaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtacac 558 |||||| ||||||||||| | ||||||||||||| ||| ||||| |||||||||||||| Sbjct: 4211400 taaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtacac 4211341 Query: 559 agcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgggt 618 |||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| | Sbjct: 4211340 agcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacggat 4211281 Query: 619 aacaactccgtcac 632 |||| |||| |||| Sbjct: 4211280 aacagctccatcac 4211267 Score = 95.6 bits (48), Expect = 2e-16 Identities = 69/76 (90%) Strand = Plus / Minus Query: 631 acttctgaactgttcggcggttggggtgctgattgcccacccattgttgcggcagaagaa 690 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 4211185 acttctgaactgttcactagttggggtgctgattgcccagccattgttgcggcagaagaa 4211126 Query: 691 gatcatcggtgcttcc 706 ||||| ||| |||||| Sbjct: 4211125 gatcaccggcgcttcc 4211110 Score = 69.9 bits (35), Expect = 1e-08 Identities = 137/171 (80%) Strand = Plus / Minus Query: 138 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 197 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 4211917 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 4211858 Query: 198 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 257 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 4211857 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 4211798 Query: 258 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagct 308 | ||| |||| ||||| || || |||||||||||||||| ||| |||| Sbjct: 4211797 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagct 4211747
>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104999 Score = 170 bits (86), Expect = 4e-39 Identities = 158/182 (86%) Strand = Plus / Plus Query: 307 ctcttgcctcacattgttcctgagttgagactcttgagtaccgcaccaccatccattccc 366 |||||||||||||||||||||||||| ||| || | | | |||||||| |||||||| Sbjct: 72109 ctcttgcctcacattgttcctgagttcagattcatcttcatcacaccaccagccattccc 72168 Query: 367 ctgaacccattttctgtacctggagacgggatcccttgctgttcgccaatgctccatctc 426 |||||||||||||||||||||||| | ||||| | ||||||||||| ||||| ||||| Sbjct: 72169 ctgaacccattttctgtacctggaaatcggatctcgcgctgttcgccagtgctcgatctc 72228 Query: 427 atcagccggcctgtacttggttgaatcgtcggatgtcgagtgatggccgactcggtaggt 486 ||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 72229 atcgaccggcctgtatttggttgaatcatcggatgtcgagtgatggccgacccggtaagt 72288 Query: 487 ca 488 || Sbjct: 72289 ca 72290 Score = 99.6 bits (50), Expect = 1e-17 Identities = 113/134 (84%) Strand = Plus / Plus Query: 499 taaaataggccttccttcagttatagccatttcccgggcggtgtgcactgcactgtacac 558 |||||| ||||||||||| | ||||||||||||| ||| ||||| |||||||||||||| Sbjct: 72370 taaaattggccttccttccttgatagccatttccctggctgtgtgaactgcactgtacac 72429 Query: 559 agcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgaccccgggt 618 |||||||| ||| || || |||| ||||||||||| ||||| || || ||||| ||| | Sbjct: 72430 agcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccacggat 72489 Query: 619 aacaactccgtcac 632 |||| |||| |||| Sbjct: 72490 aacagctccatcac 72503 Score = 95.6 bits (48), Expect = 2e-16 Identities = 69/76 (90%) Strand = Plus / Plus Query: 631 acttctgaactgttcggcggttggggtgctgattgcccacccattgttgcggcagaagaa 690 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct: 72585 acttctgaactgttcactagttggggtgctgattgcccagccattgttgcggcagaagaa 72644 Query: 691 gatcatcggtgcttcc 706 ||||| ||| |||||| Sbjct: 72645 gatcaccggcgcttcc 72660 Score = 69.9 bits (35), Expect = 1e-08 Identities = 137/171 (80%) Strand = Plus / Plus Query: 138 actaaacaggcacatcagccggatactctgcagggtgccttttgatggtatccagcagcg 197 |||||| | |||||||||| || || |||||||||||| | ||||| |||||| |||| Sbjct: 71853 actaaatatgcacatcagctgggtagtctgcagggtgcttcttgattgtatccctcagca 71912 Query: 198 accgctcttgctggcgaaggttggaagggatttgatcataaacatctgtgaagagctccg 257 | |||||||||| | ||||||||||| | || |||||||||||| ||||| || || | Sbjct: 71913 atcgctcttgctctcttaggttggaaggaacttcatcataaacatcggtgaatagttcag 71972 Query: 258 caagcccgtgttttggcatcctctcggccacctgaatggcttgcaggagct 308 | ||| |||| ||||| || || |||||||||||||||| ||| |||| Sbjct: 71973 cgagcggcggtttcggcattctttctgccacctgaatggctttcagaagct 72023
>gb|AF251067.1|AF251067 Oryza sativa branched chain alpha-keto acid dehydrogenase E1-alpha subunit mRNA, partial cds Length = 258 Score = 127 bits (64), Expect = 5e-26 Identities = 130/152 (85%) Strand = Plus / Minus Query: 555 acacagcaagagtatcgttgccgtctagcctgatactgcgtattccgtaggcctgacccc 614 |||||||||||| ||| || || |||| ||||||||||| ||||| || || ||||| | Sbjct: 258 acacagcaagagcatcatttccatctactctgatactgcgcattccataagcttgaccac 199 Query: 615 gggtaacaactccgtcacttctgaactgttcggcggttggggtgctgattgcccacccat 674 || ||||| |||| ||||||||||||||||| |||||||||||||||| ||| |||| Sbjct: 198 ggataacagctccatcacttctgaactgttcactagttggggtgctgattgtccagccat 139 Query: 675 tgttgcggcagaagaagatcatcggtgcttcc 706 ||||||||||||||||||||| ||| |||||| Sbjct: 138 tgttgcggcagaagaagatcaccggcgcttcc 107
>emb|AL021480.1|CEY39E4A Caenorhabditis elegans YAC Y39E4A, complete sequence Length = 26209 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 452 tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 498 ||||||||||| || |||||||||| ||||||||||| |||||||| Sbjct: 18640 tcgtcggatgttgaatgatggccgaggcggtaggtcatggcctcgat 18686
>gb|AC121233.16| Medicago truncatula clone mth2-14g13, complete sequence Length = 129617 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 437 ctgtacttggttgaatcgtcggatgtcgagtgatggccgactc 479 |||||||||||||||||||||||||| || || ||||| |||| Sbjct: 57722 ctgtacttggttgaatcgtcggatgtagaatggtggcctactc 57680
>ref|NM_001038287.1| Caenorhabditis elegans Y39E4A.3a (Transketolase) mRNA, complete cds Length = 1400 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 452 tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 498 ||||||||||| || |||||||||| ||||||||||| |||||||| Sbjct: 1075 tcgtcggatgttgaatgatggccgaggcggtaggtcatggcctcgat 1029
>ref|NM_001038288.1| Caenorhabditis elegans Y39E4A.3b (Transketolase) mRNA, complete cds Length = 1677 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 452 tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 498 ||||||||||| || |||||||||| ||||||||||| |||||||| Sbjct: 1075 tcgtcggatgttgaatgatggccgaggcggtaggtcatggcctcgat 1029
>ref|XM_756727.1| Ustilago maydis 521 hypothetical protein (UM05673.1) partial mRNA Length = 2361 Score = 46.1 bits (23), Expect = 0.16 Identities = 41/47 (87%) Strand = Plus / Minus Query: 452 tcgtcggatgtcgagtgatggccgactcggtaggtcatcgcctcgat 498 ||||| || |||||||| || ||||| ||||||||||| |||||||| Sbjct: 1997 tcgtccgaggtcgagtggtgaccgacgcggtaggtcatagcctcgat 1951
>ref|NM_111356.3| Arabidopsis thaliana structural constituent of ribosome AT3G04840 mRNA, complete cds Length = 1004 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 ccatctcatcagccggcctgt 440 ||||||||||||||||||||| Sbjct: 812 ccatctcatcagccggcctgt 792
>gb|AY081585.1| Arabidopsis thaliana putative 40S ribosomal protein S3A (S phase specific) (At3g04840) mRNA, complete cds Length = 870 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 ccatctcatcagccggcctgt 440 ||||||||||||||||||||| Sbjct: 754 ccatctcatcagccggcctgt 734
>gb|AY062796.1| Arabidopsis thaliana putative 40S ribosomal protein S3A (S phase specific) (At3g04840; T9J14.21) mRNA, complete cds Length = 1000 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 ccatctcatcagccggcctgt 440 ||||||||||||||||||||| Sbjct: 811 ccatctcatcagccggcctgt 791
>dbj|AK220818.1| Arabidopsis thaliana mRNA for 40S ribosomal protein S3A like protein, complete cds, clone: RAFL22-32-J16 Length = 468 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 ccatctcatcagccggcctgt 440 ||||||||||||||||||||| Sbjct: 269 ccatctcatcagccggcctgt 249
>emb|BX822077.1|CNS0A7LX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB10ZB01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 716 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 ccatctcatcagccggcctgt 440 ||||||||||||||||||||| Sbjct: 524 ccatctcatcagccggcctgt 504
>emb|BX824488.1|CNS0A5KP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH51ZC05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 927 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 ccatctcatcagccggcctgt 440 ||||||||||||||||||||| Sbjct: 744 ccatctcatcagccggcctgt 724
>gb|AC009465.7|AC009465 Arabidopsis thaliana chromosome 3 BAC T9J14 genomic sequence, complete sequence Length = 93234 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 ccatctcatcagccggcctgt 440 ||||||||||||||||||||| Sbjct: 73562 ccatctcatcagccggcctgt 73582
>gb|AY085787.1| Arabidopsis thaliana clone 18185 mRNA, complete sequence Length = 1001 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 ccatctcatcagccggcctgt 440 ||||||||||||||||||||| Sbjct: 812 ccatctcatcagccggcctgt 792
>gb|AC144742.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0052F16, complete sequence Length = 162082 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gggtacttacagactccaac 117 |||||||||||||||||||| Sbjct: 126085 gggtacttacagactccaac 126104
>gb|AC012297.12| Mus musculus chromosome 7, clone RP23-78H9, complete sequence Length = 180139 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 atgctccatctcatcagccg 434 |||||||||||||||||||| Sbjct: 15240 atgctccatctcatcagccg 15221
>ref|XM_584132.2| PREDICTED: Bos taurus similar to Sulfonylurea receptor 1 (LOC538996), mRNA Length = 2629 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 acagactccaacaacatcgc 125 |||||||||||||||||||| Sbjct: 1483 acagactccaacaacatcgc 1502
>gb|AY485632.1| Sphaerophorus globosus DNA-dependent RNA polymerase II second largest subunit gene, partial cds Length = 2758 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 aggagctcttgcctcacatt 321 |||||||||||||||||||| Sbjct: 461 aggagctcttgcctcacatt 480
>emb|CR854931.8| Zebrafish DNA sequence from clone DKEY-30P2 in linkage group 14, complete sequence Length = 203332 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 aattcaagctataatcaata 61 |||||||||||||||||||| Sbjct: 84164 aattcaagctataatcaata 84183
>emb|CR854933.8| Zebrafish DNA sequence from clone DKEY-48H17 in linkage group 14, complete sequence Length = 190712 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 aattcaagctataatcaata 61 |||||||||||||||||||| Sbjct: 122881 aattcaagctataatcaata 122862
>emb|AL031433.4|HS171N11 Human DNA sequence from clone RP1-171N11 on chromosome 6q23 Contains the 5' end of a novel gene, the gene for UC28 protein (UROC28) and a CpG island, complete sequence Length = 129227 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 ccacctgaatggcttgcagg 304 |||||||||||||||||||| Sbjct: 80878 ccacctgaatggcttgcagg 80859
>gb|AC091639.5| Homo sapiens chromosome 8, clone RP11-61K18, complete sequence Length = 147480 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 agcagtttattcctcctttt 30 |||||||||||||||||||| Sbjct: 87767 agcagtttattcctcctttt 87748
>gb|AC093879.3| Homo sapiens BAC clone RP11-650J17 from 4, complete sequence Length = 216870 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 gcttgcaggagctcttgcct 315 |||||||||||||||||||| Sbjct: 143206 gcttgcaggagctcttgcct 143187
>gb|AC090960.3| Homo sapiens chromosome 3 clone RP11-83E7 map 3p, complete sequence Length = 176744 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ttattcatgggtacttacag 109 |||||||||||||||||||| Sbjct: 48384 ttattcatgggtacttacag 48365
>ref|NM_058988.1| Caenorhabditis elegans Y119C1B.10 (Y119C1B.10) mRNA, complete cds Length = 915 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 tacagactccaacaacatcg 124 |||||||||||||||||||| Sbjct: 633 tacagactccaacaacatcg 652
>emb|BX548166.7| Zebrafish DNA sequence from clone CH211-280G5 in linkage group 10, complete sequence Length = 166449 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 aattcaagctataatcaata 61 |||||||||||||||||||| Sbjct: 45541 aattcaagctataatcaata 45560
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gggtacttacagactccaac 117 |||||||||||||||||||| Sbjct: 16334732 gggtacttacagactccaac 16334751
>gb|AC025828.3|AC025828 Homo sapiens, clone RP11-13I24, complete sequence Length = 152843 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 agcagtttattcctcctttt 30 |||||||||||||||||||| Sbjct: 108886 agcagtttattcctcctttt 108905
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 676 gttgcggcagaagaagatca 695 |||||||||||||||||||| Sbjct: 1623805 gttgcggcagaagaagatca 1623824
>dbj|AK120753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006K02, full insert sequence Length = 4617 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 gggtacttacagactccaac 117 |||||||||||||||||||| Sbjct: 2472 gggtacttacagactccaac 2453
>dbj|AK070681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063E02, full insert sequence Length = 3424 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 gggtacttacagactccaac 117 |||||||||||||||||||| Sbjct: 2277 gggtacttacagactccaac 2258
>gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complete sequence Length = 190414 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 atgctccatctcatcagccg 434 |||||||||||||||||||| Sbjct: 1911 atgctccatctcatcagccg 1930 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,324,190 Number of Sequences: 3902068 Number of extensions: 5324190 Number of successful extensions: 141103 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 140909 Number of HSP's gapped (non-prelim): 179 length of query: 707 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 684 effective length of database: 17,143,297,704 effective search space: 11726015629536 effective search space used: 11726015629536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)