ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19k24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK063880.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 1e-48
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 151 4e-33
3dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D... 151 4e-33
4dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic D... 151 4e-33
5dbj|AK073518.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
6emb|AJ289023.1|PDU289023 Platynereis dumerilii mRNA for homeobox... 46 0.17
7ref|NM_129043.3| Arabidopsis thaliana IMB1 (IMBIBITION-INDUCIBLE... 44 0.65
8ref|NM_201873.1| Arabidopsis thaliana IMB1 (IMBIBITION-INDUCIBLE... 44 0.65
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.65
10gb|AY180100.1| Arabidopsis thaliana IMB1 (At2g34900) mRNA, compl... 44 0.65
11emb|BX321862.1| Nitrosomonas europaea ATCC 19718, complete genom... 44 0.65
12gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I3 map... 44 0.65
13gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare str... 44 0.65
14dbj|AK222242.1| Arabidopsis thaliana mRNA for RING3 protein-like... 44 0.65
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.65
16emb|BX820082.1|CNS0A9C5 Arabidopsis thaliana Full-length cDNA Co... 44 0.65
17emb|BX820056.1|CNS0A9G7 Arabidopsis thaliana Full-length cDNA Co... 44 0.65
18gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome 42 2.6
19gb|AC092494.2| Drosophila melanogaster clone BACR23I18, complete... 42 2.6
20gb|AC011251.6| Drosophila melanogaster clone BACR09F10, complete... 42 2.6
21emb|X63789.1|TTSNRU51 T.thermophila genes for snRNA U5-1, snRNA ... 42 2.6
22gb|AE013218.1| Buchnera aphidicola str. Sg (Schizaphis graminum)... 42 2.6
23gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome 42 2.6
24gb|AE003568.4| Drosophila melanogaster chromosome X, section 71 ... 42 2.6 
>dbj|AK063880.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-F07, full
           insert sequence
          Length = 567

 Score =  202 bits (102), Expect = 1e-48
 Identities = 234/278 (84%)
 Strand = Plus / Minus

                                                                       
Query: 214 gttggcctgtcgttccaaagcttccctcacaaagaacttcaacctccagagggtagtctc 273
           |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 284 gttggcctgtcgttccaatgcttccctcacaaagaatttcaacctccagagggttgtctc 225

                                                                       
Query: 274 gctctgagcatccatgtcaaggtgcacttcttctgctgtagtttggaagtcaggattgtc 333
            |||||||||||||| ||||| | || ||| ||| || ||| || ||||  ||| |||||
Sbjct: 224 actctgagcatccatatcaagttccagttcgtctcctttagcttcgaagctagggttgtc 165

                                                                       
Query: 334 ttgtgcgaccagctccagcgccttgctaagatcttccggagtcaggtggcaaagacctgc 393
           |||||| |||| |||||  |||||  |||| ||||| |||| ||||||||| ||||||||
Sbjct: 164 ttgtgcaaccatctccaatgccttagtaagctcttctggagacaggtggcagagacctgc 105

                                                                       
Query: 394 accaagttttctcttctcgtctgtggtcattttcttgcatctctgaaccaccatgttccg 453
           ||| |||||||| ||||| | ||| |||||||||  |||| |||| |||||||| | |||
Sbjct: 104 acccagttttcttttctcatatgtagtcattttccggcatttctggaccaccatttgccg 45

                                                 
Query: 454 tagctcctccagctgcctattaatctcattcagctcat 491
            |||||||||| |||| | || || ||| |||||||||
Sbjct: 44  aagctcctccaactgcttgttgatttcaatcagctcat 7
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  151 bits (76), Expect = 4e-33
 Identities = 136/156 (87%)
 Strand = Plus / Minus

                                                                           
Query: 587     tcaactttaggaagaagctggagccatttctcctcaaatttgtctagtaataacttggcc 646
               |||||||||||||||||||||||||||||||| |||||||| || || ||| | || |||
Sbjct: 2025578 tcaactttaggaagaagctggagccatttctcttcaaatttctcaagcaatgatttcgcc 2025519

                                                                           
Query: 647     attatgtgaacatcgtgatgttcatcattatatgtcattgcattgttaaaaattaatcta 706
               ||||| |||||||| ||  |||||||||| ||  |||||||||||  |||||||||||||
Sbjct: 2025518 attatatgaacatcatgtcgttcatcattgtacttcattgcattggcaaaaattaatcta 2025459

                                                   
Query: 707     acatcagaatatatttctcgaacacttttatacttg 742
               ||||| |||||||||||||| ||| | |||||||||
Sbjct: 2025458 acatccgaatatatttctcggacattgttatacttg 2025423



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 62/66 (93%)
 Strand = Plus / Minus

                                                                           
Query: 214     gttggcctgtcgttccaaagcttccctcacaaagaacttcaacctccagagggtagtctc 273
               |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 2026652 gttggcctgtcgttccaatgcttccctcacaaagaatttcaacctccagagggttgtctc 2026593

                     
Query: 274     gctctg 279
                |||||
Sbjct: 2026592 actctg 2026587



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 124/151 (82%)
 Strand = Plus / Minus

                                                                           
Query: 277     ctgagcatccatgtcaaggtgcacttcttctgctgtagtttggaagtcaggattgtcttg 336
               |||||||||||| ||||| | || ||| ||| || ||| || ||||  ||| ||||||||
Sbjct: 2026501 ctgagcatccatatcaagttccagttcgtctcctttagcttcgaagctagggttgtcttg 2026442

                                                                           
Query: 337     tgcgaccagctccagcgccttgctaagatcttccggagtcaggtggcaaagacctgcacc 396
               ||| |||| |||||  |||||  |||| ||||| |||| ||||||||| |||||||||||
Sbjct: 2026441 tgcaaccatctccaatgccttagtaagctcttctggagacaggtggcagagacctgcacc 2026382

                                              
Query: 397     aagttttctcttctcgtctgtggtcattttc 427
                |||||||| ||||| | ||| |||||||||
Sbjct: 2026381 cagttttcttttctcatatgtagtcattttc 2026351



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                         
Query: 494     tcagtatcttttgctaattttgcaatagcatcttccggagaa 535
               |||||||||||||||| |||||||||||| ||||| ||||||
Sbjct: 2025775 tcagtatcttttgctagttttgcaatagcttcttctggagaa 2025734
to top
>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0548D03
          Length = 156709

 Score =  151 bits (76), Expect = 4e-33
 Identities = 136/156 (87%)
 Strand = Plus / Minus

                                                                          
Query: 587    tcaactttaggaagaagctggagccatttctcctcaaatttgtctagtaataacttggcc 646
              |||||||||||||||||||||||||||||||| |||||||| || || ||| | || |||
Sbjct: 154358 tcaactttaggaagaagctggagccatttctcttcaaatttctcaagcaatgatttcgcc 154299

                                                                          
Query: 647    attatgtgaacatcgtgatgttcatcattatatgtcattgcattgttaaaaattaatcta 706
              ||||| |||||||| ||  |||||||||| ||  |||||||||||  |||||||||||||
Sbjct: 154298 attatatgaacatcatgtcgttcatcattgtacttcattgcattggcaaaaattaatcta 154239

                                                  
Query: 707    acatcagaatatatttctcgaacacttttatacttg 742
              ||||| |||||||||||||| ||| | |||||||||
Sbjct: 154238 acatccgaatatatttctcggacattgttatacttg 154203



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 62/66 (93%)
 Strand = Plus / Minus

                                                                          
Query: 214    gttggcctgtcgttccaaagcttccctcacaaagaacttcaacctccagagggtagtctc 273
              |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 155432 gttggcctgtcgttccaatgcttccctcacaaagaatttcaacctccagagggttgtctc 155373

                    
Query: 274    gctctg 279
               |||||
Sbjct: 155372 actctg 155367



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 124/151 (82%)
 Strand = Plus / Minus

                                                                          
Query: 277    ctgagcatccatgtcaaggtgcacttcttctgctgtagtttggaagtcaggattgtcttg 336
              |||||||||||| ||||| | || ||| ||| || ||| || ||||  ||| ||||||||
Sbjct: 155281 ctgagcatccatatcaagttccagttcgtctcctttagcttcgaagctagggttgtcttg 155222

                                                                          
Query: 337    tgcgaccagctccagcgccttgctaagatcttccggagtcaggtggcaaagacctgcacc 396
              ||| |||| |||||  |||||  |||| ||||| |||| ||||||||| |||||||||||
Sbjct: 155221 tgcaaccatctccaatgccttagtaagctcttctggagacaggtggcagagacctgcacc 155162

                                             
Query: 397    aagttttctcttctcgtctgtggtcattttc 427
               |||||||| ||||| | ||| |||||||||
Sbjct: 155161 cagttttcttttctcatatgtagtcattttc 155131



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                        
Query: 494    tcagtatcttttgctaattttgcaatagcatcttccggagaa 535
              |||||||||||||||| |||||||||||| ||||| ||||||
Sbjct: 154555 tcagtatcttttgctagttttgcaatagcttcttctggagaa 154514
to top
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0041F13
          Length = 163230

 Score =  151 bits (76), Expect = 4e-33
 Identities = 136/156 (87%)
 Strand = Plus / Minus

                                                                         
Query: 587   tcaactttaggaagaagctggagccatttctcctcaaatttgtctagtaataacttggcc 646
             |||||||||||||||||||||||||||||||| |||||||| || || ||| | || |||
Sbjct: 46440 tcaactttaggaagaagctggagccatttctcttcaaatttctcaagcaatgatttcgcc 46381

                                                                         
Query: 647   attatgtgaacatcgtgatgttcatcattatatgtcattgcattgttaaaaattaatcta 706
             ||||| |||||||| ||  |||||||||| ||  |||||||||||  |||||||||||||
Sbjct: 46380 attatatgaacatcatgtcgttcatcattgtacttcattgcattggcaaaaattaatcta 46321

                                                 
Query: 707   acatcagaatatatttctcgaacacttttatacttg 742
             ||||| |||||||||||||| ||| | |||||||||
Sbjct: 46320 acatccgaatatatttctcggacattgttatacttg 46285



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 62/66 (93%)
 Strand = Plus / Minus

                                                                         
Query: 214   gttggcctgtcgttccaaagcttccctcacaaagaacttcaacctccagagggtagtctc 273
             |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 47514 gttggcctgtcgttccaatgcttccctcacaaagaatttcaacctccagagggttgtctc 47455

                   
Query: 274   gctctg 279
              |||||
Sbjct: 47454 actctg 47449



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 124/151 (82%)
 Strand = Plus / Minus

                                                                         
Query: 277   ctgagcatccatgtcaaggtgcacttcttctgctgtagtttggaagtcaggattgtcttg 336
             |||||||||||| ||||| | || ||| ||| || ||| || ||||  ||| ||||||||
Sbjct: 47363 ctgagcatccatatcaagttccagttcgtctcctttagcttcgaagctagggttgtcttg 47304

                                                                         
Query: 337   tgcgaccagctccagcgccttgctaagatcttccggagtcaggtggcaaagacctgcacc 396
             ||| |||| |||||  |||||  |||| ||||| |||| ||||||||| |||||||||||
Sbjct: 47303 tgcaaccatctccaatgccttagtaagctcttctggagacaggtggcagagacctgcacc 47244

                                            
Query: 397   aagttttctcttctcgtctgtggtcattttc 427
              |||||||| ||||| | ||| |||||||||
Sbjct: 47243 cagttttcttttctcatatgtagtcattttc 47213



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 494   tcagtatcttttgctaattttgcaatagcatcttccggagaa 535
             |||||||||||||||| |||||||||||| ||||| ||||||
Sbjct: 46637 tcagtatcttttgctagttttgcaatagcttcttctggagaa 46596
to top
>dbj|AK073518.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042I08, full
            insert sequence
          Length = 2666

 Score =  145 bits (73), Expect = 2e-31
 Identities = 151/177 (85%)
 Strand = Plus / Minus

                                                                        
Query: 214  gttggcctgtcgttccaaagcttccctcacaaagaacttcaacctccagagggtagtctc 273
            |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 2383 gttggcctgtcgttccaatgcttccctcacaaagaatttcaacctccagagggttgtctc 2324

                                                                        
Query: 274  gctctgagcatccatgtcaaggtgcacttcttctgctgtagtttggaagtcaggattgtc 333
             |||||||||||||| ||||| | || ||| ||| || ||| || ||||  ||| |||||
Sbjct: 2323 actctgagcatccatatcaagttccagttcgtctcctttagcttcgaagctagggttgtc 2264

                                                                     
Query: 334  ttgtgcgaccagctccagcgccttgctaagatcttccggagtcaggtggcaaagacc 390
            |||||| |||| |||||  |||||  |||| ||||| |||| ||||||||| |||||
Sbjct: 2263 ttgtgcaaccatctccaatgccttagtaagctcttctggagacaggtggcagagacc 2207
to top
>emb|AJ289023.1|PDU289023 Platynereis dumerilii mRNA for homeobox transcription factor (gsc
            gene)
          Length = 1925

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 163  gtcgcgcttcctcttcgcgtttt 185
            |||||||||||||||||||||||
Sbjct: 1227 gtcgcgcttcctcttcgcgtttt 1205
to top
>ref|NM_129043.3| Arabidopsis thaliana IMB1 (IMBIBITION-INDUCIBLE 1); DNA binding
           AT2G34900 (IMB1) transcript variant AT2G34900.1 mRNA,
           complete cds
          Length = 1278

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 606 ggagccatttctcctcaaattt 627
           ||||||||||||||||||||||
Sbjct: 693 ggagccatttctcctcaaattt 672
to top
>ref|NM_201873.1| Arabidopsis thaliana IMB1 (IMBIBITION-INDUCIBLE 1); DNA binding
           AT2G34900 (IMB1) transcript variant AT2G34900.2 mRNA,
           complete cds
          Length = 1380

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 606 ggagccatttctcctcaaattt 627
           ||||||||||||||||||||||
Sbjct: 656 ggagccatttctcctcaaattt 635
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 593     ttaggaagaagctggagccatt 614
               ||||||||||||||||||||||
Sbjct: 4053569 ttaggaagaagctggagccatt 4053548
to top
>gb|AY180100.1| Arabidopsis thaliana IMB1 (At2g34900) mRNA, complete cds
          Length = 1161

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 606 ggagccatttctcctcaaattt 627
           ||||||||||||||||||||||
Sbjct: 628 ggagccatttctcctcaaattt 607
to top
>emb|BX321862.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 7/10
          Length = 295250

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 335    tgtgcgaccagctccagcgcct 356
              ||||||||||||||||||||||
Sbjct: 143235 tgtgcgaccagctccagcgcct 143214
to top
>gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete
             sequence
          Length = 108484

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 606   ggagccatttctcctcaaattt 627
             ||||||||||||||||||||||
Sbjct: 52889 ggagccatttctcctcaaattt 52910
to top
>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0061L19, from chromosome 3, complete sequence
          Length = 153322

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 593   ttaggaagaagctggagccatt 614
             ||||||||||||||||||||||
Sbjct: 45799 ttaggaagaagctggagccatt 45820
to top
>dbj|AK222242.1| Arabidopsis thaliana mRNA for RING3 protein-like, complete cds,
           clone: RAFL25-49-G02
          Length = 1372

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 606 ggagccatttctcctcaaattt 627
           ||||||||||||||||||||||
Sbjct: 665 ggagccatttctcctcaaattt 644
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 593     ttaggaagaagctggagccatt 614
               ||||||||||||||||||||||
Sbjct: 4053680 ttaggaagaagctggagccatt 4053659
to top
>emb|BX820082.1|CNS0A9C5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS71ZG11 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1278

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 606 ggagccatttctcctcaaattt 627
           ||||||||||||||||||||||
Sbjct: 693 ggagccatttctcctcaaattt 672
to top
>emb|BX820056.1|CNS0A9G7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS69ZF03 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1385

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 606 ggagccatttctcctcaaattt 627
           ||||||||||||||||||||||
Sbjct: 661 ggagccatttctcctcaaattt 640
to top
>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome
          Length = 1111496

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 487    ctcatcatcagtatcttttgctaattttgcaat 519
              |||||||||  ||||||||||||||||| ||||
Sbjct: 164179 ctcatcatccctatcttttgctaatttttcaat 164147
to top
>gb|AC092494.2| Drosophila melanogaster clone BACR23I18, complete sequence
          Length = 172029

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 193    cttgccaggggctgcggctgtgttg 217
              |||||| ||||||||||||||||||
Sbjct: 125711 cttgccgggggctgcggctgtgttg 125735
to top
>gb|AC011251.6| Drosophila melanogaster clone BACR09F10, complete sequence
          Length = 173988

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 193    cttgccaggggctgcggctgtgttg 217
              |||||| ||||||||||||||||||
Sbjct: 165823 cttgccgggggctgcggctgtgttg 165847
to top
>emb|X63789.1|TTSNRU51 T.thermophila genes for snRNA U5-1, snRNA U5-2
          Length = 3364

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 500 tcttttgctaattttgcaata 520
           |||||||||||||||||||||
Sbjct: 837 tcttttgctaattttgcaata 857
to top
>gb|AE013218.1| Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome
          Length = 641454

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 693    taaaaattaatctaacatcag 713
              |||||||||||||||||||||
Sbjct: 386303 taaaaattaatctaacatcag 386323
to top
>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome
          Length = 1993564

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 309    ctgtagtttggaagtcaggat 329
              |||||||||||||||||||||
Sbjct: 865443 ctgtagtttggaagtcaggat 865423
to top
>gb|AE003568.4| Drosophila melanogaster chromosome X, section 71 of 74 of the complete
              sequence
          Length = 315815

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 193    cttgccaggggctgcggctgtgttg 217
              |||||| ||||||||||||||||||
Sbjct: 265803 cttgccgggggctgcggctgtgttg 265827


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,635,042
Number of Sequences: 3902068
Number of extensions: 7635042
Number of successful extensions: 140728
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140535
Number of HSP's gapped (non-prelim): 193
length of query: 745
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 722
effective length of database: 17,143,297,704
effective search space: 12377460942288
effective search space used: 12377460942288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
to top