ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19k22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464101.1| Oryza sativa (japonica cultivar-group), mRNA 351 2e-93
2gb|AY105182.1| Zea mays PCO117620 mRNA sequence 291 2e-75
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
4dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic D... 262 1e-66
5dbj|AK103312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 1e-36
6dbj|AB071296.1| Oryza sativa OsARF7a mRNA for auxin response fac... 159 2e-35
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 98 5e-17
8dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic D... 98 5e-17
9dbj|AP004324.2| Oryza sativa (japonica cultivar-group) genomic D... 98 5e-17
10gb|AY110307.1| Zea mays CL18202_1 mRNA sequence 50 0.011
11ref|XM_483368.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.16
12dbj|AB071297.1| Oryza sativa OsARF7b mRNA for auxin response fac... 46 0.16
13gb|AC109266.24| Mus musculus chromosome 16, clone RP23-176C2, co... 44 0.65
14gb|AY137966.1| Mirabilis jalapa clone SM-01 auxin-responsive fac... 44 0.65
15emb|AL009173.2|HS32F7 Human DNA sequence from clone RP1-32F7 on ... 44 0.65
16ref|XM_779874.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.65
17gb|AC026394.11| Homo sapiens chromosome 10 clone RP11-427O20, co... 44 0.65
18dbj|BS000120.2| Pan troglodytes chromosome 22 clone:RP43-007D11,... 44 0.65
19dbj|AP001728.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 44 0.65
20gb|AC154275.2| Mus musculus BAC clone RP24-299G8 from chromosome... 44 0.65
21dbj|AP001432.2| Homo sapiens genomic DNA, chromosome 21q, clone:... 44 0.65
22dbj|AP000151.1| Homo sapiens genomic DNA, chromosome 21q22.2, DS... 44 0.65
23dbj|AP000009.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrom... 44 0.65
24dbj|D83253.1| Homo sapiens genomic DNA, chromosome 21q22.2, p1 c... 44 0.65
25gb|U53672.2|ATU53672 Arabidopsis thaliana early auxin-induced IA... 42 2.6
26ref|NM_101780.1| Arabidopsis thaliana ARF19; transcription facto... 42 2.6
27ref|NM_123060.2| Arabidopsis thaliana ARF8 (AUXIN RESPONSE FACTO... 42 2.6
28gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2)... 42 2.6
29gb|AC022819.8| Homo sapiens chromosome 15, clone RP11-41I15, com... 42 2.6
30gb|AC037479.9| Homo sapiens chromosome 15, clone RP11-616M17, co... 42 2.6
31dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
32gb|AC157095.9| Mus musculus 6 BAC RP24-350P11 (Roswell Park Canc... 42 2.6
33dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
34dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.6
35emb|BX546496.3| Mouse DNA sequence from clone RP24-85I16 on chro... 42 2.6
36dbj|AB024026.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.6
37emb|AJ441312.1|ATH441312 Arabidopsis thaliana mRNA for early aux... 42 2.6
38emb|CR384061.4| Zebrafish DNA sequence from clone CH211-182E10 i... 42 2.6
39dbj|AK059543.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.6
40gb|AC153591.4| Mus musculus 6 BAC RP23-301O22 (Roswell Park Canc... 42 2.6
41gb|AF042196.1|AF042196 Arabidopsis thaliana auxin response facto... 42 2.6
42gb|AY669794.1| Arabidopsis thaliana clone C105352 ARF19 (At1g192... 42 2.6
43gb|AY669790.1| Arabidopsis thaliana clone C105345 ARF8 (At5g3702... 42 2.6 
>ref|XM_464101.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3420

 Score =  351 bits (177), Expect = 2e-93
 Identities = 276/309 (89%)
 Strand = Plus / Minus

                                                                        
Query: 431  tcattcgaattggtcataggggccgatggaagggttcccggagttctggtcgtaacgagg 490
            |||||||||||| ||||| |||||||||||||||||||||| |||||||||  | |||||
Sbjct: 3420 tcattcgaattgatcatacgggccgatggaagggttcccggggttctggtcacagcgagg 3361

                                                                        
Query: 491  cttccaagtattccctccatctgagctgctgcaagcctggttgggcaggacattgctccc 550
            | |||||  |||| | ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3360 cctccaaccattcaccccatctgagctgctgcaagcctggttggggaggacattgctccc 3301

                                                                        
Query: 551  caaatcaccatccaggctcatcttttgcacttcttgaggggataggatcctaatgcactt 610
            || ||||||||||| |||||||| ||||||||||||||| ||||| |||||||||||  |
Sbjct: 3300 cagatcaccatccaagctcatctgttgcacttcttgaggtgatagaatcctaatgcatct 3241

                                                                        
Query: 611  aacgcaattcacaaactcctcccatgggtcatcaccaagaagtaggacgtcgtcctcatg 670
             || || ||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||
Sbjct: 3240 tacacagttcacaaactcctcccatgggtcatcaccaagaagcaggatgtcatcctcgtg 3181

                                                                        
Query: 671  atctgtgtagactagcttccaacctattctctgtcggtcttcaagttgcccctctatacc 730
            |||  ||||||| || ||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct: 3180 atccttgtagaccagtttccagcctattctctgtcgatcttcaagttgaccctctatacc 3121

                     
Query: 731  aaacatgcg 739
            |||||||||
Sbjct: 3120 aaacatgcg 3112
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>gb|AY105182.1| Zea mays PCO117620 mRNA sequence
          Length = 671

 Score =  291 bits (147), Expect = 2e-75
 Identities = 231/259 (89%)
 Strand = Plus / Minus

                                                                       
Query: 426 tcaggtcattcgaattggtcataggggccgatggaagggttcccggagttctggtcgtaa 485
           |||||||| || |||||||| |||   |||||||||||||| || | ||||||||||   
Sbjct: 259 tcaggtcactcaaattggtcgtagaacccgatggaagggttaccagggttctggtcgcgg 200

                                                                       
Query: 486 cgaggcttccaagtattccctccatctgagctgctgcaagcctggttgggcaggacattg 545
           ||||||||||| | |||||| ||||||||||||||||||||||||||||  |||||||||
Sbjct: 199 cgaggcttccaggcattcccaccatctgagctgctgcaagcctggttggagaggacattg 140

                                                                       
Query: 546 ctccccaaatcaccatccaggctcatcttttgcacttcttgaggggataggatcctaatg 605
            |||||||||||||||| | ||||||||  ||||||||||| ||||||||||||||||||
Sbjct: 139 ttccccaaatcaccatctaagctcatctgctgcacttcttggggggataggatcctaatg 80

                                                                       
Query: 606 cacttaacgcaattcacaaactcctcccatgggtcatcaccaagaagtaggacgtcgtcc 665
           ||||| || |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 79  cacttcacacaattcacaaactcctcccatgggtcgtcaccaagaagtaggacgtcatcc 20

                              
Query: 666 tcatgatctgtgtagacta 684
           |||||||| ||||||||||
Sbjct: 19  tcatgatccgtgtagacta 1
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  262 bits (132), Expect = 1e-66
 Identities = 201/224 (89%)
 Strand = Plus / Plus

                                                                           
Query: 406     tatgtgaatgcacctctaagtcaggtcattcgaattggtcataggggccgatggaagggt 465
               |||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 2207996 tatgtgaatgaacctctaagtcaggtcattcgaattgatcatacgggccgatggaagggt 2208055

                                                                           
Query: 466     tcccggagttctggtcgtaacgaggcttccaagtattccctccatctgagctgctgcaag 525
               |||||| |||||||||  | |||||| |||||  |||| | |||||||||||||||||||
Sbjct: 2208056 tcccggggttctggtcacagcgaggcctccaaccattcaccccatctgagctgctgcaag 2208115

                                                                           
Query: 526     cctggttgggcaggacattgctccccaaatcaccatccaggctcatcttttgcacttctt 585
               |||||||||| |||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 2208116 cctggttggggaggacattgctccccagatcaccatccaagctcatctgttgcacttctt 2208175

                                                           
Query: 586     gaggggataggatcctaatgcacttaacgcaattcacaaactcc 629
               |||| ||||| |||||||||||  | || || ||||||||||||
Sbjct: 2208176 gaggtgatagaatcctaatgcatcttacacagttcacaaactcc 2208219



 Score =  133 bits (67), Expect = 9e-28
 Identities = 100/111 (90%)
 Strand = Plus / Plus

                                                                           
Query: 629     ctcccatgggtcatcaccaagaagtaggacgtcgtcctcatgatctgtgtagactagctt 688
               |||||||||||||||||||||||| |||| ||| ||||| |||||  ||||||| || ||
Sbjct: 2208483 ctcccatgggtcatcaccaagaagcaggatgtcatcctcgtgatccttgtagaccagttt 2208542

                                                                  
Query: 689     ccaacctattctctgtcggtcttcaagttgcccctctataccaaacatgcg 739
               ||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 2208543 ccagcctattctctgtcgatcttcaagttgaccctctataccaaacatgcg 2208593



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                   
Query: 244     tctgaggagcattttccctcacagctataagctgac 279
               |||||||||||||| ||||| |||||||||||||||
Sbjct: 2207816 tctgaggagcatttgccctcccagctataagctgac 2207851
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>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1679_B08
          Length = 142529

 Score =  262 bits (132), Expect = 1e-66
 Identities = 201/224 (89%)
 Strand = Plus / Plus

                                                                          
Query: 406    tatgtgaatgcacctctaagtcaggtcattcgaattggtcataggggccgatggaagggt 465
              |||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 122689 tatgtgaatgaacctctaagtcaggtcattcgaattgatcatacgggccgatggaagggt 122748

                                                                          
Query: 466    tcccggagttctggtcgtaacgaggcttccaagtattccctccatctgagctgctgcaag 525
              |||||| |||||||||  | |||||| |||||  |||| | |||||||||||||||||||
Sbjct: 122749 tcccggggttctggtcacagcgaggcctccaaccattcaccccatctgagctgctgcaag 122808

                                                                          
Query: 526    cctggttgggcaggacattgctccccaaatcaccatccaggctcatcttttgcacttctt 585
              |||||||||| |||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 122809 cctggttggggaggacattgctccccagatcaccatccaagctcatctgttgcacttctt 122868

                                                          
Query: 586    gaggggataggatcctaatgcacttaacgcaattcacaaactcc 629
              |||| ||||| |||||||||||  | || || ||||||||||||
Sbjct: 122869 gaggtgatagaatcctaatgcatcttacacagttcacaaactcc 122912



 Score =  133 bits (67), Expect = 9e-28
 Identities = 100/111 (90%)
 Strand = Plus / Plus

                                                                          
Query: 629    ctcccatgggtcatcaccaagaagtaggacgtcgtcctcatgatctgtgtagactagctt 688
              |||||||||||||||||||||||| |||| ||| ||||| |||||  ||||||| || ||
Sbjct: 123176 ctcccatgggtcatcaccaagaagcaggatgtcatcctcgtgatccttgtagaccagttt 123235

                                                                 
Query: 689    ccaacctattctctgtcggtcttcaagttgcccctctataccaaacatgcg 739
              ||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 123236 ccagcctattctctgtcgatcttcaagttgaccctctataccaaacatgcg 123286



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                  
Query: 244    tctgaggagcattttccctcacagctataagctgac 279
              |||||||||||||| ||||| |||||||||||||||
Sbjct: 122509 tctgaggagcatttgccctcccagctataagctgac 122544
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>dbj|AK103312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125G19, full
            insert sequence
          Length = 3550

 Score =  163 bits (82), Expect = 1e-36
 Identities = 249/304 (81%), Gaps = 3/304 (0%)
 Strand = Plus / Minus

                                                                        
Query: 429  ggtcattcgaattggtcataggggccgatggaagggttcccggagttctggtcgtaacga 488
            |||||||||||||| ||||| |  ||  |||||||||| ||||||||||| ||| | |||
Sbjct: 3289 ggtcattcgaattgttcatatgaaccattggaagggttaccggagttctgatcgcagcga 3230

                                                                        
Query: 489  ggcttccaagtattccctccatctgagctgctgcaagcctggttgggcaggacattgctc 548
            | | |||| | ||||||||| |||||||||||||| ||||| || ||  | |  ||| ||
Sbjct: 3229 gccctccatgcattccctccgtctgagctgctgcaggcctgattcgggggaatgttgttc 3170

                                                                        
Query: 549  cccaaatcacca---tccaggctcatcttttgcacttcttgaggggataggatcctaatg 605
            || | ||||| |   |||| ||||||||  || ||||||||||| || ||||||||||||
Sbjct: 3169 ccgagatcacaaccctccaagctcatctgctgaacttcttgaggtgaaaggatcctaatg 3110

                                                                        
Query: 606  cacttaacgcaattcacaaactcctcccatgggtcatcaccaagaagtaggacgtcgtcc 665
            || || ||||||   ||||| |||||||||||||| || ||||||||||||| ||| || 
Sbjct: 3109 catttcacgcaaccgacaaattcctcccatgggtcgtcgccaagaagtaggatgtcatct 3050

                                                                        
Query: 666  tcatgatctgtgtagactagcttccaacctattctctgtcggtcttcaagttgcccctct 725
            ||||||||  |||| || ||||||||||| |||||||| || || |||||||||||||||
Sbjct: 3049 tcatgatccttgtaaacgagcttccaaccaattctctgccgttcctcaagttgcccctct 2990

                
Query: 726  atac 729
            ||||
Sbjct: 2989 atac 2986
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>dbj|AB071296.1| Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds
          Length = 3372

 Score =  159 bits (80), Expect = 2e-35
 Identities = 247/302 (81%), Gaps = 3/302 (0%)
 Strand = Plus / Minus

                                                                        
Query: 431  tcattcgaattggtcataggggccgatggaagggttcccggagttctggtcgtaacgagg 490
            |||||||||||| ||||| |  ||  |||||||||| ||||||||||| ||| | |||| 
Sbjct: 3372 tcattcgaattgttcatatgaaccattggaagggttaccggagttctgatcgcagcgagc 3313

                                                                        
Query: 491  cttccaagtattccctccatctgagctgctgcaagcctggttgggcaggacattgctccc 550
            | |||| | ||||||||| |||||||||||||| ||||| || ||  | |  ||| ||||
Sbjct: 3312 cctccatgcattccctccgtctgagctgctgcaggcctgattcgggggaatgttgttccc 3253

                                                                        
Query: 551  caaatcacca---tccaggctcatcttttgcacttcttgaggggataggatcctaatgca 607
             | ||||| |   |||| ||||||||  || ||||||||||| || ||||||||||||||
Sbjct: 3252 gagatcacaaccctccaagctcatctgctgaacttcttgaggtgaaaggatcctaatgca 3193

                                                                        
Query: 608  cttaacgcaattcacaaactcctcccatgggtcatcaccaagaagtaggacgtcgtcctc 667
             || ||||||   ||||| |||||||||||||| || ||||||||||||| ||| || ||
Sbjct: 3192 tttcacgcaaccgacaaattcctcccatgggtcgtcgccaagaagtaggatgtcatcttc 3133

                                                                        
Query: 668  atgatctgtgtagactagcttccaacctattctctgtcggtcttcaagttgcccctctat 727
            ||||||  |||| || ||||||||||| |||||||| || || |||||||||||||||||
Sbjct: 3132 atgatccttgtaaacgagcttccaaccaattctctgccgttcctcaagttgcccctctat 3073

              
Query: 728  ac 729
            ||
Sbjct: 3072 ac 3071
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                            
Query: 629      ctcccatgggtcatcaccaagaagtaggacgtcgtcctcatgatctgtgtagactagctt 688
                |||||||||||| || ||||||||||||| ||| || ||||||||  |||| || |||||
Sbjct: 29148530 ctcccatgggtcgtcgccaagaagtaggatgtcatcttcatgatccttgtaaacgagctt 29148471

                                                         
Query: 689      ccaacctattctctgtcggtcttcaagttgcccctctatac 729
                |||||| |||||||| || || |||||||||||||||||||
Sbjct: 29148470 ccaaccaattctctgccgttcctcaagttgcccctctatac 29148430



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 154/192 (80%), Gaps = 3/192 (1%)
 Strand = Plus / Minus

                                                                            
Query: 429      ggtcattcgaattggtcataggggccgatggaagggttcccggagttctggtcgtaacga 488
                |||||||||||||| ||||| |  ||  |||||||||| ||||||||||| ||| | |||
Sbjct: 29148900 ggtcattcgaattgttcatatgaaccattggaagggttaccggagttctgatcgcagcga 29148841

                                                                            
Query: 489      ggcttccaagtattccctccatctgagctgctgcaagcctggttgggcaggacattgctc 548
                | | |||| | ||||||||| |||||||||||||| ||||| || ||  | |  ||| ||
Sbjct: 29148840 gccctccatgcattccctccgtctgagctgctgcaggcctgattcgggggaatgttgttc 29148781

                                                                            
Query: 549      cccaaatc---accatccaggctcatcttttgcacttcttgaggggataggatcctaatg 605
                || | |||   ||| |||| ||||||||  || ||||||||||| || ||||||||||||
Sbjct: 29148780 ccgagatcacaaccctccaagctcatctgctgaacttcttgaggtgaaaggatcctaatg 29148721

                            
Query: 606      cacttaacgcaa 617
                || || ||||||
Sbjct: 29148720 catttcacgcaa 29148709
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>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0596H10
          Length = 166570

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                          
Query: 629    ctcccatgggtcatcaccaagaagtaggacgtcgtcctcatgatctgtgtagactagctt 688
              |||||||||||| || ||||||||||||| ||| || ||||||||  |||| || |||||
Sbjct: 163517 ctcccatgggtcgtcgccaagaagtaggatgtcatcttcatgatccttgtaaacgagctt 163458

                                                       
Query: 689    ccaacctattctctgtcggtcttcaagttgcccctctatac 729
              |||||| |||||||| || || |||||||||||||||||||
Sbjct: 163457 ccaaccaattctctgccgttcctcaagttgcccctctatac 163417



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 154/192 (80%), Gaps = 3/192 (1%)
 Strand = Plus / Minus

                                                                          
Query: 429    ggtcattcgaattggtcataggggccgatggaagggttcccggagttctggtcgtaacga 488
              |||||||||||||| ||||| |  ||  |||||||||| ||||||||||| ||| | |||
Sbjct: 163887 ggtcattcgaattgttcatatgaaccattggaagggttaccggagttctgatcgcagcga 163828

                                                                          
Query: 489    ggcttccaagtattccctccatctgagctgctgcaagcctggttgggcaggacattgctc 548
              | | |||| | ||||||||| |||||||||||||| ||||| || ||  | |  ||| ||
Sbjct: 163827 gccctccatgcattccctccgtctgagctgctgcaggcctgattcgggggaatgttgttc 163768

                                                                          
Query: 549    cccaaatc---accatccaggctcatcttttgcacttcttgaggggataggatcctaatg 605
              || | |||   ||| |||| ||||||||  || ||||||||||| || ||||||||||||
Sbjct: 163767 ccgagatcacaaccctccaagctcatctgctgaacttcttgaggtgaaaggatcctaatg 163708

                          
Query: 606    cacttaacgcaa 617
              || || ||||||
Sbjct: 163707 catttcacgcaa 163696
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>dbj|AP004324.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1215_E11
          Length = 105301

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 88/101 (87%)
 Strand = Plus / Minus

                                                                         
Query: 629   ctcccatgggtcatcaccaagaagtaggacgtcgtcctcatgatctgtgtagactagctt 688
             |||||||||||| || ||||||||||||| ||| || ||||||||  |||| || |||||
Sbjct: 15817 ctcccatgggtcgtcgccaagaagtaggatgtcatcttcatgatccttgtaaacgagctt 15758

                                                      
Query: 689   ccaacctattctctgtcggtcttcaagttgcccctctatac 729
             |||||| |||||||| || || |||||||||||||||||||
Sbjct: 15757 ccaaccaattctctgccgttcctcaagttgcccctctatac 15717



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 154/192 (80%), Gaps = 3/192 (1%)
 Strand = Plus / Minus

                                                                         
Query: 429   ggtcattcgaattggtcataggggccgatggaagggttcccggagttctggtcgtaacga 488
             |||||||||||||| ||||| |  ||  |||||||||| ||||||||||| ||| | |||
Sbjct: 16187 ggtcattcgaattgttcatatgaaccattggaagggttaccggagttctgatcgcagcga 16128

                                                                         
Query: 489   ggcttccaagtattccctccatctgagctgctgcaagcctggttgggcaggacattgctc 548
             | | |||| | ||||||||| |||||||||||||| ||||| || ||  | |  ||| ||
Sbjct: 16127 gccctccatgcattccctccgtctgagctgctgcaggcctgattcgggggaatgttgttc 16068

                                                                         
Query: 549   cccaaatc---accatccaggctcatcttttgcacttcttgaggggataggatcctaatg 605
             || | |||   ||| |||| ||||||||  || ||||||||||| || ||||||||||||
Sbjct: 16067 ccgagatcacaaccctccaagctcatctgctgaacttcttgaggtgaaaggatcctaatg 16008

                         
Query: 606   cacttaacgcaa 617
             || || ||||||
Sbjct: 16007 catttcacgcaa 15996
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>gb|AY110307.1| Zea mays CL18202_1 mRNA sequence
          Length = 655

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 612 acgcaattcacaaactcctcccatgggtcatcaccaa 648
           ||||| ||||| || ||||||||||||||||||||||
Sbjct: 455 acgcagttcacgaagtcctcccatgggtcatcaccaa 491
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>ref|XM_483368.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3342

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 618  ttcacaaactcctcccatgggtcatcaccaa 648
            |||||||| ||||||||||| ||||||||||
Sbjct: 3200 ttcacaaagtcctcccatggatcatcaccaa 3170



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 507  ccatctgagctgctgcaagcctggttggg 535
            ||||| |||||||||||||| ||||||||
Sbjct: 3311 ccatcagagctgctgcaagcttggttggg 3283
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>dbj|AB071297.1| Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds
          Length = 3291

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 618  ttcacaaactcctcccatgggtcatcaccaa 648
            |||||||| ||||||||||| ||||||||||
Sbjct: 3149 ttcacaaagtcctcccatggatcatcaccaa 3119



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 507  ccatctgagctgctgcaagcctggttggg 535
            ||||| |||||||||||||| ||||||||
Sbjct: 3260 ccatcagagctgctgcaagcttggttggg 3232
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>gb|AC109266.24| Mus musculus chromosome 16, clone RP23-176C2, complete sequence
          Length = 171797

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 394  taaaatgacagctatgtgaatg 415
            ||||||||||||||||||||||
Sbjct: 9361 taaaatgacagctatgtgaatg 9340
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>gb|AY137966.1| Mirabilis jalapa clone SM-01 auxin-responsive factor protein mRNA,
           partial cds
          Length = 410

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 579 acttcttgaggggataggatcc 600
           ||||||||||||||||||||||
Sbjct: 410 acttcttgaggggataggatcc 389
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>emb|AL009173.2|HS32F7 Human DNA sequence from clone RP1-32F7 on chromosome Xq21.2-21.33
             Contains the NAP1L3 gene for nucleosome assembly protein
             1-like 3, the FLJ37659 gene and a CpG island, complete
             sequence
          Length = 101167

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 216   ctacatatatatccaaaagaaa 237
             ||||||||||||||||||||||
Sbjct: 28426 ctacatatatatccaaaagaaa 28447
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>ref|XM_779874.1| PREDICTED: Strongylocentrotus purpuratus similar to slit homolog 1
           (LOC579778), mRNA
          Length = 693

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 408 tgtgaatgcacctctaagtcag 429
           ||||||||||||||||||||||
Sbjct: 460 tgtgaatgcacctctaagtcag 481
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>gb|AC026394.11| Homo sapiens chromosome 10 clone RP11-427O20, complete sequence
          Length = 174186

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 217   tacatatatatccaaaagaaaa 238
             ||||||||||||||||||||||
Sbjct: 39610 tacatatatatccaaaagaaaa 39631
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>dbj|BS000120.2| Pan troglodytes chromosome 22 clone:RP43-007D11, map 22, complete
              sequences
          Length = 219802

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 216    ctacatatatatccaaaagaaa 237
              ||||||||||||||||||||||
Sbjct: 161883 ctacatatatatccaaaagaaa 161862
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>dbj|AP001728.1| Homo sapiens genomic DNA, chromosome 21q, section 72/105
          Length = 340000

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 216   ctacatatatatccaaaagaaa 237
             ||||||||||||||||||||||
Sbjct: 58161 ctacatatatatccaaaagaaa 58140
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>gb|AC154275.2| Mus musculus BAC clone RP24-299G8 from chromosome 16, complete sequence
          Length = 183487

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 394    taaaatgacagctatgtgaatg 415
              ||||||||||||||||||||||
Sbjct: 175681 taaaatgacagctatgtgaatg 175660
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>dbj|AP001432.2| Homo sapiens genomic DNA, chromosome 21q, clone:CMP21-T1601, complete
             sequence
          Length = 102247

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 216   ctacatatatatccaaaagaaa 237
             ||||||||||||||||||||||
Sbjct: 25556 ctacatatatatccaaaagaaa 25535
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>dbj|AP000151.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone
             D47-S479, segment 3/16, complete sequence
          Length = 100000

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 216   ctacatatatatccaaaagaaa 237
             ||||||||||||||||||||||
Sbjct: 27578 ctacatatatatccaaaagaaa 27557
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>dbj|AP000009.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 2/13
          Length = 152345

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 216    ctacatatatatccaaaagaaa 237
              ||||||||||||||||||||||
Sbjct: 127578 ctacatatatatccaaaagaaa 127557
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>dbj|D83253.1| Homo sapiens genomic DNA, chromosome 21q22.2, p1 clone: T1212 and T1601,
              complete sequence
          Length = 110174

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 216    ctacatatatatccaaaagaaa 237
              ||||||||||||||||||||||
Sbjct: 109600 ctacatatatatccaaaagaaa 109579
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>gb|U53672.2|ATU53672 Arabidopsis thaliana early auxin-induced IAA22 mRNA, complete cds
          Length = 3807

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 612  acgcaattcacaaactcctcccatgggtcatcaccaa 648
            ||||| ||||||||||| ||||| || ||||||||||
Sbjct: 3313 acgcagttcacaaactcttcccaaggatcatcaccaa 3277
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>ref|NM_101780.1| Arabidopsis thaliana ARF19; transcription factor AT1G19220 (ARF19)
            mRNA, complete cds
          Length = 3588

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 612  acgcaattcacaaactcctcccatgggtcatcaccaa 648
            ||||| ||||||||||| ||||| || ||||||||||
Sbjct: 3095 acgcagttcacaaactcttcccaaggatcatcaccaa 3059
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>ref|NM_123060.2| Arabidopsis thaliana ARF8 (AUXIN RESPONSE FACTOR 8); transcription
            factor AT5G37020 (ARF8) mRNA, complete cds
          Length = 2840

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 629  ctcccatgggtcatcaccaag 649
            |||||||||||||||||||||
Sbjct: 2442 ctcccatgggtcatcaccaag 2422
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>gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds
          Length = 3723

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 623  aaactcctcccatgggtcatc 643
            |||||||||||||||||||||
Sbjct: 3283 aaactcctcccatgggtcatc 3263
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>gb|AC022819.8| Homo sapiens chromosome 15, clone RP11-41I15, complete sequence
          Length = 193803

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 219   catatatatccaaaagaaaag 239
             |||||||||||||||||||||
Sbjct: 94468 catatatatccaaaagaaaag 94448
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>gb|AC037479.9| Homo sapiens chromosome 15, clone RP11-616M17, complete sequence
          Length = 177761

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 219   catatatatccaaaagaaaag 239
             |||||||||||||||||||||
Sbjct: 25601 catatatatccaaaagaaaag 25621
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 507      ccatctgagctgctgcaagcctggttggg 535
                ||||| |||||||||||||| ||||||||
Sbjct: 25864080 ccatcagagctgctgcaagcttggttggg 25864108
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>gb|AC157095.9| Mus musculus 6 BAC RP24-350P11 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 177800

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 508   catctgagctgctgcaagcctggtt 532
             ||||||||||||| |||||||||||
Sbjct: 42951 catctgagctgctccaagcctggtt 42927
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>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1003_A09
          Length = 150755

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 507   ccatctgagctgctgcaagcctggttggg 535
             ||||| |||||||||||||| ||||||||
Sbjct: 49867 ccatcagagctgctgcaagcttggttggg 49895
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>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0689E12
          Length = 147516

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 507    ccatctgagctgctgcaagcctggttggg 535
              ||||| |||||||||||||| ||||||||
Sbjct: 136291 ccatcagagctgctgcaagcttggttggg 136319
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>emb|BX546496.3| Mouse DNA sequence from clone RP24-85I16 on chromosome X, complete
            sequence
          Length = 89031

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 215  actacatatatatccaaaaga 235
            |||||||||||||||||||||
Sbjct: 8754 actacatatatatccaaaaga 8734
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>dbj|AB024026.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15O15
          Length = 23026

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 629   ctcccatgggtcatcaccaag 649
             |||||||||||||||||||||
Sbjct: 18789 ctcccatgggtcatcaccaag 18769
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>emb|AJ441312.1|ATH441312 Arabidopsis thaliana mRNA for early auxin-induced protein 22 (iaa22
           gene)
          Length = 837

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 612 acgcaattcacaaactcctcccatgggtcatcaccaa 648
           ||||| ||||||||||| ||||| || ||||||||||
Sbjct: 671 acgcagttcacaaactcttcccaaggatcatcaccaa 635
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>emb|CR384061.4| Zebrafish DNA sequence from clone CH211-182E10 in linkage group 20,
              complete sequence
          Length = 147179

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 634    atgggtcatcaccaagaagta 654
              |||||||||||||||||||||
Sbjct: 145756 atgggtcatcaccaagaagta 145736
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>dbj|AK059543.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F01, full
           insert sequence
          Length = 611

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 507 ccatctgagctgctgcaagcctggttggg 535
           ||||| |||||||||||||| ||||||||
Sbjct: 126 ccatcagagctgctgcaagcttggttggg 98
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>gb|AC153591.4| Mus musculus 6 BAC RP23-301O22 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 211061

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 508    catctgagctgctgcaagcctggtt 532
              ||||||||||||| |||||||||||
Sbjct: 185486 catctgagctgctccaagcctggtt 185462
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>gb|AF042196.1|AF042196 Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete
            cds
          Length = 2817

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 629  ctcccatgggtcatcaccaag 649
            |||||||||||||||||||||
Sbjct: 2442 ctcccatgggtcatcaccaag 2422
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>gb|AY669794.1| Arabidopsis thaliana clone C105352 ARF19 (At1g19220) mRNA, complete
            cds
          Length = 3292

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 612  acgcaattcacaaactcctcccatgggtcatcaccaa 648
            ||||| ||||||||||| ||||| || ||||||||||
Sbjct: 3095 acgcagttcacaaactcttcccaaggatcatcaccaa 3059
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>gb|AY669790.1| Arabidopsis thaliana clone C105345 ARF8 (At5g37020) mRNA, complete
            cds
          Length = 2467

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 629  ctcccatgggtcatcaccaag 649
            |||||||||||||||||||||
Sbjct: 2319 ctcccatgggtcatcaccaag 2299


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,713,107
Number of Sequences: 3902068
Number of extensions: 6713107
Number of successful extensions: 133503
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133272
Number of HSP's gapped (non-prelim): 226
length of query: 740
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 717
effective length of database: 17,143,297,704
effective search space: 12291744453768
effective search space used: 12291744453768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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