>VU84_HHV6Z (P52533) Protein U84|
          Length = 342

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
 Frame = -2

Query: 521 SKPSPKRTSNLTRKT----NGYRSNGNSNGLMTPTPRRSSLGSATPELSTP----KSYSS 366
           +KPS +R  N+T KT    N  ++N +S  + T  P  S+   A P+ ++P         
Sbjct: 25  TKPSTERKKNVTTKTTIRNNRLQNNLSSQTVQTDKPVDSATARAFPQHTSPDIKFNKEKY 84

Query: 365 RYNRYFGDSRRLSVSQLNFGDD 300
           R N  +  S+   +S   F  D
Sbjct: 85  RNNAIYAHSKLRKISNAVFHQD 106

>LOLA3_DROME (Q7KQZ4) Longitudinals lacking protein, isoforms A/B/C/L|
          Length = 787

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = -2

Query: 521 SKPSPKRTSNLTRKTNGYRSNGNSNGLMTPTPRRSSLGSATPELSTPKSYSSRYNRYFGD 342
           S+P    T   T  ++ + SNGN +G  T T     L   T E +T     +   +    
Sbjct: 525 SEPRAASTPARTHSSSNHSSNGNGSGKPTKTSSGGKLNHLTEEEATALMLKAVAEK---Q 581

Query: 341 SRRLSVSQLNFGDDSLST 288
           +   + ++L+FG+D  S+
Sbjct: 582 AAAAAGTELSFGEDQASS 599

>FOXE2_HUMAN (Q99526) Forkhead box protein E2 (HNF-3/fork head-like protein 5)|
           (HFKL5) (HFKH4)
          Length = 500

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -2

Query: 479 TNGYRSNGNSNGLMTPTPRRSSLGSATPELSTPKSYSSRYNRYFGDSRRL 330
           TNGY+    S G + PTP  ++   A P+ STP+    +  RYF D+ R+
Sbjct: 395 TNGYQPRQASPGPVRPTPSYAA-AYAGPDGSTPR---EKAVRYFADAGRV 440

>RUNT_DROME (P22814) Segmentation protein Runt|
          Length = 510

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -2

Query: 515 PSPKRTSNLTRKTNGYRSNGNSNGLMTPTPRRSSLGSATPELSTPKSYSS 366
           P P+++SN T   +    N   +   T T   SS GS+TP+LST  + SS
Sbjct: 35  PGPQQSSNATT-ASAIAINPAQSLANTSTHSASSTGSSTPDLSTNNTSSS 83

>GP116_RAT (Q9WVT0) Probable G-protein coupled receptor 116 precursor (G-protein|
            coupled hepta-helical receptor Ig-hepta)
          Length = 1349

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 425  RRSSLGSATPELSTPKSYSSRYNRYFGDSRRLSVS 321
            + +SLGS+TP  S     S R+N  FG +   +VS
Sbjct: 1295 KSTSLGSSTPVFSMSSPISRRFNNLFGKTGTYNVS 1329

>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 425  RRSSLGSATPELSTPKSYSSRYNRYFGDSRRLSVS 321
            + +SLGS+TP  S     S R+N  FG +   +VS
Sbjct: 1292 KSTSLGSSTPVFSMSSPISRRFNNLFGKTGTYNVS 1326

>SNX41_DEBHA (Q6BHN9) Sorting nexin-41|
          Length = 670

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 518 KPSPKRTSNLTRKTNGYRSNGNSNGLMTPTPRRSSLGSATPELSTPKSYSSRY 360
           KP  +    LT+KTN   +NGN+     P     S G+ +P   +P    ++Y
Sbjct: 335 KPLQENKKKLTKKTNKILNNGNTEASSQP-----STGTTSPVNHSPDFIKNKY 382

>TCPA_SCHMA (Q94757) T-complex protein 1 subunit alpha (TCP-1-alpha)|
           (CCT-alpha)
          Length = 545

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 18/72 (25%), Positives = 37/72 (51%)
 Frame = +2

Query: 287 MLIVNHRRSSIVIQIAALNLQSIYYSDWNMIWVSKAQGWHCLGMTDEVLGSLVHYCSHLN 466
           +L V H  + I++Q+A L  + +     +++ ++ A     L   DE++   VH  + +N
Sbjct: 61  LLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAA----LLKNADELISRFVHPTTVIN 116

Query: 467 GTRLSFWLSCSF 502
           G RL+   +C +
Sbjct: 117 GYRLACREACKY 128

>PARM1_MOUSE (Q923D3) Protein PARM-1 precursor|
          Length = 296

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -2

Query: 521 SKPSPKRTSNLTRKTNGYRSNGNSNGLMTPTPRRSSLGSATPELSTPKSYS 369
           + P  KR  N T  +     + +S+G + PTP   SLGS  PE + P + S
Sbjct: 86  TSPPLKRDVNSTDSSPAGFPSTSSDGHLAPTPEEHSLGS--PEATVPATGS 134

>GPNMB_RAT (Q6P7C7) Transmembrane glycoprotein NMB precursor|
          Length = 572

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -2

Query: 515 PSPKRTSNLTRKTNGYRSNGNSNGLMTPTPRRSSLGSATPELSTPKSYSSRYNRY 351
           P P  T + +  T+   ++  S  L TP+P     G  + ELS   + + R NRY
Sbjct: 322 PCPSPTPSPSSSTSPSPASSPSPTLSTPSPSLMPTGHKSMELSDISNENCRINRY 376

>PIF1_SCHPO (Q9UUA2) DNA repair and recombination protein pif1, mitochondrial|
           precursor (EC 3.6.1.-) (ATP-dependent helicase pif1)
          Length = 805

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 19/91 (20%)
 Frame = -2

Query: 515 PSPKRTSN--------LTRKTNGYRSNGNSNGLMTPTPRRSSLGSATPELSTPKSYSSRY 360
           P PKRTS         ++  ++   SNG S+ L +   +R S   +TP++S  K +S   
Sbjct: 225 PDPKRTSTSADISQHTVSNDSSNKLSNGRSSSLDSLAKKRMSKSKSTPQIS--KKFSVPL 282

Query: 359 NR-----------YFGDSRRLSVSQLNFGDD 300
           N               DSR+ SV  +   D+
Sbjct: 283 NSASKSPIGSSLFKTSDSRKKSVPSIFLSDE 313


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,020,766
Number of Sequences: 219361
Number of extensions: 1324851
Number of successful extensions: 4351
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4299
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)