Clone Name | rbasd19k17 |
---|---|
Clone Library Name | barley_pub |
>NUCC_PSINU (Q8WHX3) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) Length = 393 Score = 30.4 bits (67), Expect = 1.3 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Frame = +3 Query: 48 ARVAHQTWKTNWNSTVXRTMGREGRPHQKEIXSEHAV---CSSGWDGIFLCSSSLXLGLE 218 AR HQ+ WN + MG++ P K + EH V G GIFL + Sbjct: 292 ARRLHQSQNLEWNDFDYQFMGKKSSPTFKLLKQEHYVRIEAPKGELGIFLIGNDSVFPWR 351 Query: 219 W 221 W Sbjct: 352 W 352
>CRIP3_HUMAN (Q6Q6R5) Cysteine-rich protein 3 (CRP3) (Chromosome 6 LIM-only| protein) (h6LIMo) Length = 217 Score = 28.9 bits (63), Expect = 3.7 Identities = 10/40 (25%), Positives = 18/40 (45%) Frame = +3 Query: 108 GREGRPHQKEIXSEHAVCSSGWDGIFLCSSSLXLGLEWDR 227 G++ PH K E ++C + ++ + LG W R Sbjct: 107 GKKSPPHMKTFTGETSLCPGCGEPVYFAEKVMSLGRNWHR 146
>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)| Length = 3164 Score = 28.9 bits (63), Expect = 3.7 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Frame = -2 Query: 216 QDQVXSCCYKERCHPNPKSKLRVLXEFLSDG---XGPLFPSSVXPWNSNLSSKFDVXXXX 46 Q+ S + +R P+P +++RVL F + G G +F + + W S+ D Sbjct: 2168 QNAADSMLFVQRLTPHPDARIRVLPAFSAGGPPTRGLMFGTRLADWRRGKLSETDPLAPW 2227 Query: 45 XLCIHLNPDRG 13 L +RG Sbjct: 2228 RSVPELGTERG 2238
>VE2_PAPVE (P11329) Probable regulatory protein E2| Length = 415 Score = 28.1 bits (61), Expect = 6.3 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = +3 Query: 57 AHQTWKTNWNSTVXRTMGREGRPHQKEIXSEHAVCSSGWDGIFLCS 194 +++TW T W++ R EG E AVC++ GI+ C+ Sbjct: 128 SNKTWYTAWSTVYVRGTEEEG--------WETAVCAADGQGIYYCA 165
>K0256_HUMAN (Q93073) Protein KIAA0256| Length = 1101 Score = 27.7 bits (60), Expect = 8.3 Identities = 10/36 (27%), Positives = 21/36 (58%) Frame = +3 Query: 48 ARVAHQTWKTNWNSTVXRTMGREGRPHQKEIXSEHA 155 + V + ++TNW + V + G E ++KE+ +H+ Sbjct: 867 SEVNEKEYETNWRNMVETSDGLEASENEKEVSCKHS 902
>EGFL8_HUMAN (Q99944) EGF-like domain-containing protein 8 precursor (Epidermal| growth factor-like protein 8) (Multiple EGF-like domain protein 8) (Vascular endothelial-statin 2) (VE-statin-2) Length = 293 Score = 27.7 bits (60), Expect = 8.3 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 90 TVXRTMGREGRPHQKEIXSEHAVCSSGW 173 T+ R M RE R +E+ HAVC GW Sbjct: 76 TMYRVMWREVR---REVQQTHAVCCQGW 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,446,212 Number of Sequences: 219361 Number of extensions: 561786 Number of successful extensions: 1404 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1388 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1403 length of database: 80,573,946 effective HSP length: 55 effective length of database: 68,509,091 effective search space used: 1644218184 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)