ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19k17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NUCC_PSINU (Q8WHX3) NAD(P)H-quinone oxidoreductase chain H, chlo... 30 1.3
2CRIP3_HUMAN (Q6Q6R5) Cysteine-rich protein 3 (CRP3) (Chromosome ... 29 3.7
3TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36) 29 3.7
4VE2_PAPVE (P11329) Probable regulatory protein E2 28 6.3
5K0256_HUMAN (Q93073) Protein KIAA0256 28 8.3
6EGFL8_HUMAN (Q99944) EGF-like domain-containing protein 8 precur... 28 8.3

>NUCC_PSINU (Q8WHX3) NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain H)
           (NADH-plastoquinone oxidoreductase 49 kDa subunit)
          Length = 393

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
 Frame = +3

Query: 48  ARVAHQTWKTNWNSTVXRTMGREGRPHQKEIXSEHAV---CSSGWDGIFLCSSSLXLGLE 218
           AR  HQ+    WN    + MG++  P  K +  EH V      G  GIFL  +       
Sbjct: 292 ARRLHQSQNLEWNDFDYQFMGKKSSPTFKLLKQEHYVRIEAPKGELGIFLIGNDSVFPWR 351

Query: 219 W 221
           W
Sbjct: 352 W 352



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>CRIP3_HUMAN (Q6Q6R5) Cysteine-rich protein 3 (CRP3) (Chromosome 6 LIM-only|
           protein) (h6LIMo)
          Length = 217

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +3

Query: 108 GREGRPHQKEIXSEHAVCSSGWDGIFLCSSSLXLGLEWDR 227
           G++  PH K    E ++C    + ++     + LG  W R
Sbjct: 107 GKKSPPHMKTFTGETSLCPGCGEPVYFAEKVMSLGRNWHR 146



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>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)|
          Length = 3164

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -2

Query: 216  QDQVXSCCYKERCHPNPKSKLRVLXEFLSDG---XGPLFPSSVXPWNSNLSSKFDVXXXX 46
            Q+   S  + +R  P+P +++RVL  F + G    G +F + +  W     S+ D     
Sbjct: 2168 QNAADSMLFVQRLTPHPDARIRVLPAFSAGGPPTRGLMFGTRLADWRRGKLSETDPLAPW 2227

Query: 45   XLCIHLNPDRG 13
                 L  +RG
Sbjct: 2228 RSVPELGTERG 2238



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>VE2_PAPVE (P11329) Probable regulatory protein E2|
          Length = 415

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 57  AHQTWKTNWNSTVXRTMGREGRPHQKEIXSEHAVCSSGWDGIFLCS 194
           +++TW T W++   R    EG         E AVC++   GI+ C+
Sbjct: 128 SNKTWYTAWSTVYVRGTEEEG--------WETAVCAADGQGIYYCA 165



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>K0256_HUMAN (Q93073) Protein KIAA0256|
          Length = 1101

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 48  ARVAHQTWKTNWNSTVXRTMGREGRPHQKEIXSEHA 155
           + V  + ++TNW + V  + G E   ++KE+  +H+
Sbjct: 867 SEVNEKEYETNWRNMVETSDGLEASENEKEVSCKHS 902



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>EGFL8_HUMAN (Q99944) EGF-like domain-containing protein 8 precursor (Epidermal|
           growth factor-like protein 8) (Multiple EGF-like domain
           protein 8) (Vascular endothelial-statin 2) (VE-statin-2)
          Length = 293

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 90  TVXRTMGREGRPHQKEIXSEHAVCSSGW 173
           T+ R M RE R   +E+   HAVC  GW
Sbjct: 76  TMYRVMWREVR---REVQQTHAVCCQGW 100


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,446,212
Number of Sequences: 219361
Number of extensions: 561786
Number of successful extensions: 1404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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