Clone Name | rbasd19k02 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_189916.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 654 Score = 178 bits (90), Expect = 1e-41 Identities = 236/282 (83%), Gaps = 2/282 (0%) Strand = Plus / Minus Query: 172 ggccagtccttcctgatctcaaagctgtacctcatgtccaggtacaccttcccatcatca 231 ||||| |||||||| ||||||||| ||| ||||| |||| ||| || ||||||||| Sbjct: 641 ggccactccttcctaatctcaaagtagtaactcatctccaagtagcatttgccatcatca 582 Query: 232 tccacaaactttaatctagcagaataggagcccctcgcaaagatgcc-gctcggggtgct 290 || |||||||||| | ||||||||||||| || || || || ||||| ||| |||||| | Sbjct: 581 tcaacaaactttagtttagcagaataggaacctcttgcgaacatgccagct-ggggtggt 523 Query: 291 atcttcttcggccttgtacgtgtagggctcctgctgagggctgaatgtccccagcatcac 350 || ||||| ||| || ||||||||||| |||| || |||||||||||||||||||| Sbjct: 522 ctcctcttcaccctcatatgtgtagggctctagctggggactgaatgtccccagcatcac 463 Query: 351 cttctggttctccactcttactccggtcttccagacggtgtgcgagtacttgagaccgga 410 |||||||||||| ||||||||||| ||||||||||| |||| | ||||||||| || || Sbjct: 462 cttctggttctcaactcttactccagtcttccagacagtgttggtgtacttgaggcctga 403 Query: 411 cacgatgttgttggagacggcgaaggagaagcggaagctgta 452 ||||||||||||||||||| |||| ||||||||||||||| Sbjct: 402 cacgatgttgttggagacgatgaagctgaagcggaagctgta 361
>dbj|AK071735.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112G04, full insert sequence Length = 1085 Score = 178 bits (90), Expect = 1e-41 Identities = 236/282 (83%), Gaps = 2/282 (0%) Strand = Plus / Minus Query: 172 ggccagtccttcctgatctcaaagctgtacctcatgtccaggtacaccttcccatcatca 231 ||||| |||||||| ||||||||| ||| ||||| |||| ||| || ||||||||| Sbjct: 732 ggccactccttcctaatctcaaagtagtaactcatctccaagtagcatttgccatcatca 673 Query: 232 tccacaaactttaatctagcagaataggagcccctcgcaaagatgcc-gctcggggtgct 290 || |||||||||| | ||||||||||||| || || || || ||||| ||| |||||| | Sbjct: 672 tcaacaaactttagtttagcagaataggaacctcttgcgaacatgccagct-ggggtggt 614 Query: 291 atcttcttcggccttgtacgtgtagggctcctgctgagggctgaatgtccccagcatcac 350 || ||||| ||| || ||||||||||| |||| || |||||||||||||||||||| Sbjct: 613 ctcctcttcaccctcatatgtgtagggctctagctggggactgaatgtccccagcatcac 554 Query: 351 cttctggttctccactcttactccggtcttccagacggtgtgcgagtacttgagaccgga 410 |||||||||||| ||||||||||| ||||||||||| |||| | ||||||||| || || Sbjct: 553 cttctggttctcaactcttactccagtcttccagacagtgttggtgtacttgaggcctga 494 Query: 411 cacgatgttgttggagacggcgaaggagaagcggaagctgta 452 ||||||||||||||||||| |||| ||||||||||||||| Sbjct: 493 cacgatgttgttggagacgatgaagctgaagcggaagctgta 452
>gb|AY110722.1| Zea mays CL6595_1 mRNA sequence Length = 1130 Score = 121 bits (61), Expect = 2e-24 Identities = 100/113 (88%) Strand = Plus / Minus Query: 340 cccagcatcaccttctggttctccactcttactccggtcttccagacggtgtgcgagtac 399 |||||||||| |||| || |||||||| | || || ||||||||||| |||| | |||| Sbjct: 662 cccagcatcatcttcggggtctccactttgacgccagtcttccagacagtgttggtgtac 603 Query: 400 ttgagaccggacacgatgttgttggagacggcgaaggagaagcggaagctgta 452 ||||| |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 602 ttgaggccggacacgatgttgttggagacgacgaaggagaagcggaagctgta 550 Score = 40.1 bits (20), Expect = 6.1 Identities = 74/92 (80%) Strand = Plus / Minus Query: 172 ggccagtccttcctgatctcaaagctgtacctcatgtccaggtacaccttcccatcatca 231 ||||| |||||||| ||||||||| ||| ||||| |||| | | ||| ||||| || Sbjct: 830 ggccactccttcctaatctcaaaggagtagctcatctccaagaagcacttgccatcggca 771 Query: 232 tccacaaactttaatctagcagaataggagcc 263 || |||||||||| | |||| ||||||||||| Sbjct: 770 tcaacaaactttagtttagcggaataggagcc 739
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 87.7 bits (44), Expect = 3e-14 Identities = 77/88 (87%) Strand = Plus / Plus Query: 365 ctcttactccggtcttccagacggtgtgcgagtacttgagaccggacacgatgttgttgg 424 |||||||||| ||||||||||| |||| | ||||||||| || |||||||||||||||| Sbjct: 39816278 ctcttactccagtcttccagacagtgttggtgtacttgaggcctgacacgatgttgttgg 39816337 Query: 425 agacggcgaaggagaagcggaagctgta 452 ||||| |||| ||||||||||||||| Sbjct: 39816338 agacgatgaagctgaagcggaagctgta 39816365 Score = 73.8 bits (37), Expect = 4e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 310 gtgtagggctcctgctgagggctgaatgtccccagcatcaccttctggttctc 362 ||||||||||| |||| || |||||||||||||||||||||||||||||||| Sbjct: 39815873 gtgtagggctctagctggggactgaatgtccccagcatcaccttctggttctc 39815925
>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0470A12 Length = 185095 Score = 87.7 bits (44), Expect = 3e-14 Identities = 77/88 (87%) Strand = Plus / Plus Query: 365 ctcttactccggtcttccagacggtgtgcgagtacttgagaccggacacgatgttgttgg 424 |||||||||| ||||||||||| |||| | ||||||||| || |||||||||||||||| Sbjct: 167177 ctcttactccagtcttccagacagtgttggtgtacttgaggcctgacacgatgttgttgg 167236 Query: 425 agacggcgaaggagaagcggaagctgta 452 ||||| |||| ||||||||||||||| Sbjct: 167237 agacgatgaagctgaagcggaagctgta 167264 Score = 73.8 bits (37), Expect = 4e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 310 gtgtagggctcctgctgagggctgaatgtccccagcatcaccttctggttctc 362 ||||||||||| |||| || |||||||||||||||||||||||||||||||| Sbjct: 166772 gtgtagggctctagctggggactgaatgtccccagcatcaccttctggttctc 166824
>gb|AY105154.1| Zea mays PCO134624 mRNA sequence Length = 1194 Score = 48.1 bits (24), Expect = 0.025 Identities = 42/48 (87%) Strand = Plus / Minus Query: 306 gtacgtgtagggctcctgctgagggctgaatgtccccagcatcacctt 353 |||||||||||||||| |||| |||||||| || || |||||| |||| Sbjct: 432 gtacgtgtagggctccagctgggggctgaacgtgccgagcatctcctt 385
>ref|XM_467497.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1608 Score = 46.1 bits (23), Expect = 0.100 Identities = 68/83 (81%) Strand = Plus / Minus Query: 306 gtacgtgtagggctcctgctgagggctgaatgtccccagcatcaccttctggttctccac 365 ||||||||| |||||| |||| |||||||| || || |||||| |||| ||| | || || Sbjct: 1018 gtacgtgtacggctccggctgggggctgaacgtgccgagcatctccttgtggctgtcaac 959 Query: 366 tcttactccggtcttccagacgg 388 | | | |||||||||||||||| Sbjct: 958 tttgatgccggtcttccagacgg 936
>gb|AY288198.2| Oryza sativa (japonica cultivar-group) Rac GDP-dissociation inhibitor 1 (RacGDI1) mRNA, complete cds Length = 1079 Score = 46.1 bits (23), Expect = 0.100 Identities = 68/83 (81%) Strand = Plus / Minus Query: 306 gtacgtgtagggctcctgctgagggctgaatgtccccagcatcaccttctggttctccac 365 ||||||||| |||||| |||| |||||||| || || |||||| |||| ||| | || || Sbjct: 627 gtacgtgtacggctccggctgggggctgaacgtgccgagcatctccttgtggctgtcaac 568 Query: 366 tcttactccggtcttccagacgg 388 | | | |||||||||||||||| Sbjct: 567 tttgatgccggtcttccagacgg 545
>dbj|AK073093.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033007K19, full insert sequence Length = 1607 Score = 46.1 bits (23), Expect = 0.100 Identities = 68/83 (81%) Strand = Plus / Minus Query: 306 gtacgtgtagggctcctgctgagggctgaatgtccccagcatcaccttctggttctccac 365 ||||||||| |||||| |||| |||||||| || || |||||| |||| ||| | || || Sbjct: 1018 gtacgtgtacggctccggctgggggctgaacgtgccgagcatctccttgtggctgtcaac 959 Query: 366 tcttactccggtcttccagacgg 388 | | | |||||||||||||||| Sbjct: 958 tttgatgccggtcttccagacgg 936
>ref|NM_127306.2| Arabidopsis thaliana IRE1A; kinase AT2G17520 (IRE1A) mRNA, complete cds Length = 2899 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 gacacaacctaaactaaacat 76 ||||||||||||||||||||| Sbjct: 2126 gacacaacctaaactaaacat 2106
>gb|AC007584.4| Arabidopsis thaliana chromosome 2 clone MJB20 map mi398, complete sequence Length = 84592 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 gacacaacctaaactaaacat 76 ||||||||||||||||||||| Sbjct: 45007 gacacaacctaaactaaacat 44987
>emb|BX511223.6| Zebrafish DNA sequence from clone DKEYP-96B6 in linkage group 14, complete sequence Length = 190254 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 aaacattcatctcatctttca 91 ||||||||||||||||||||| Sbjct: 25815 aaacattcatctcatctttca 25795
>gb|AF308596.1|AF308596 Arabidopsis thaliana endoribonuclease/protein kinase IRE1-like protein (IRE1A) mRNA, complete cds Length = 2812 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 gacacaacctaaactaaacat 76 ||||||||||||||||||||| Sbjct: 2039 gacacaacctaaactaaacat 2019
>dbj|AK222006.1| Arabidopsis thaliana mRNA for endoribonuclease/protein kinase IRE1, complete cds, clone: RAFL22-66-D10 Length = 999 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 gacacaacctaaactaaacat 76 ||||||||||||||||||||| Sbjct: 232 gacacaacctaaactaaacat 212
>emb|BX819767.1|CNS0A8F2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS25ZB07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1117 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 gacacaacctaaactaaacat 76 ||||||||||||||||||||| Sbjct: 437 gacacaacctaaactaaacat 417
>emb|BX818884.1|CNS0A7ZK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB23ZB07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2757 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 gacacaacctaaactaaacat 76 ||||||||||||||||||||| Sbjct: 2076 gacacaacctaaactaaacat 2056
>emb|AL928805.18| Mouse DNA sequence from clone RP23-291H20 on chromosome 2, complete sequence Length = 192688 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 aataataataaacatcaccta 31 ||||||||||||||||||||| Sbjct: 48702 aataataataaacatcaccta 48682
>dbj|AB049937.1| Arabidopsis thaliana mRNA for Ire1 homolog-2, complete cds Length = 2639 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 gacacaacctaaactaaacat 76 ||||||||||||||||||||| Sbjct: 1917 gacacaacctaaactaaacat 1897
>emb|AL772308.4| Mouse DNA sequence from clone RP23-451I21 on chromosome 15, complete sequence Length = 148496 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 accacacaataataataaaca 24 ||||||||||||||||||||| Sbjct: 115850 accacacaataataataaaca 115870
>gb|AC133004.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0046F10, complete sequence Length = 184041 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 acacaataataataaacatc 26 |||||||||||||||||||| Sbjct: 73552 acacaataataataaacatc 73571
>ref|XM_958361.1| Neurospora crassa OR74A hypothetical protein ( hypothetical protein B7J19.40 [imported] - Neurospora crassa OR74A ) (NCU05463.1) partial mRNA Length = 894 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 ttcggccttgtacgtgtagggctc 320 |||||||||||||||| ||||||| Sbjct: 372 ttcggccttgtacgtgaagggctc 349
>ref|XM_325317.1| Neurospora crassa OR74A hypothetical protein ( hypothetical protein B7J19.40 [imported] - Neurospora crassa OR74A ) (NCU05463.1) partial mRNA Length = 894 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 ttcggccttgtacgtgtagggctc 320 |||||||||||||||| ||||||| Sbjct: 372 ttcggccttgtacgtgaagggctc 349
>gb|AY590560.1| Treponema pallidum subsp. endemicum isolate Iraq B TprC (tprC) gene, complete cds Length = 2000 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 919 ggcgaaggagaagcggaagc 900
>gb|AY532698.1| Treponema pallidum subsp. pallidum isolate Sea 81-3 truncated repeat protein F (tprF) gene, complete cds Length = 1221 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 841 ggcgaaggagaagcggaagc 822
>gb|AY532697.1| Treponema pallidum subsp. pallidum isolate Mexico A truncated repeat protein F (tprF) gene, complete cds Length = 1221 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 841 ggcgaaggagaagcggaagc 822
>gb|AY532696.1| Treponema pallidum subsp. pallidum isolate Sea 81-4 truncated repeat protein F (tprF) gene, complete cds Length = 1221 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 841 ggcgaaggagaagcggaagc 822
>gb|AY532695.1| Treponema pallidum subsp. pallidum isolate Chicago truncated repeat protein F (tprF) gene, complete cds Length = 1221 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 841 ggcgaaggagaagcggaagc 822
>gb|AY532694.1| Treponema pallidum subsp. pallidum isolate Bal-7 truncated repeat protein F (tprF) gene, complete cds Length = 1221 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 841 ggcgaaggagaagcggaagc 822
>gb|AY532693.1| Treponema pallidum subsp. pallidum isolate Bal-3 truncated repeat protein F (tprF) gene, complete cds Length = 1221 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 841 ggcgaaggagaagcggaagc 822
>gb|AY550205.1| Treponema pallidum subsp. pallidum isolate Bal 73-1 TprF (tprF) gene, complete cds Length = 1221 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 841 ggcgaaggagaagcggaagc 822
>gb|AY550204.1| Treponema pallidum subsp. pallidum isolate Bal-3 TprC (tprC) gene, complete cds Length = 1904 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 863 ggcgaaggagaagcggaagc 844
>gb|AY550206.1| Treponema pallidum subsp. pertenue isolate Gauthier TprC gene, complete cds Length = 2168 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 1007 ggcgaaggagaagcggaagc 988
>gb|AY542157.1| Treponema pallidum subsp. pallidum isolate Sea 81-4 TprC (tprC) gene, complete cds Length = 2237 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 1002 ggcgaaggagaagcggaagc 983
>gb|AY542156.1| Treponema pallidum subsp. pallidum isolate Bal 73-1 TprD (tprD) gene, complete cds Length = 1968 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 891 ggcgaaggagaagcggaagc 872
>gb|AY542155.1| Treponema pallidum subsp. pallidum isolate Chicago TprC (tprC) gene, complete cds Length = 2102 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 970 ggcgaaggagaagcggaagc 951
>gb|AY542154.1| Treponema pallidum subsp. pallidum isolate Mexico A TprC (tprC) gene, complete cds Length = 2187 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 952 ggcgaaggagaagcggaagc 933
>gb|AY542153.1| Treponema pallidum subsp. pallidum isolate Sea 81-3 TprC (tprC) gene, complete cds Length = 2141 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 906 ggcgaaggagaagcggaagc 887
>gb|AY536646.1| Treponema pallidum subsp. pallidum isolate Bal-7 TprC (tprC) gene, complete cds Length = 2188 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 953 ggcgaaggagaagcggaagc 934
>gb|AY536645.1| Treponema pallidum subsp. pallidum isolate Bal 73-1 TprC (tprC) gene, complete cds Length = 1863 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 840 ggcgaaggagaagcggaagc 821
>gb|AY533515.1| Treponema pallidum subsp. pallidum isolate Chicago TprD gene, complete cds Length = 1991 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 914 ggcgaaggagaagcggaagc 895
>gb|AY533514.1| Treponema pallidum subsp. pallidum isolate Mexico A TprI gene, complete cds Length = 1889 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 845 ggcgaaggagaagcggaagc 826
>gb|AY533513.1| Treponema pallidum subsp. pallidum isolate Sea 81-4 TprI gene, complete cds Length = 1890 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 848 ggcgaaggagaagcggaagc 829
>gb|AY533512.1| Treponema pallidum subsp. pallidum isolate Sea 81-3 TprI gene, complete cds Length = 1889 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 848 ggcgaaggagaagcggaagc 829
>gb|AY533511.1| Treponema pallidum subsp. pallidum isolate Chicago TprI gene, complete cds Length = 1899 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 849 ggcgaaggagaagcggaagc 830
>gb|AY533510.1| Treponema pallidum subsp. pallidum isolate Bal 73-1 TprI gene, complete cds Length = 1904 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 856 ggcgaaggagaagcggaagc 837
>gb|AY533509.1| Treponema pallidum subsp. pallidum isolate Bal-7 TprI gene, complete cds Length = 1905 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 853 ggcgaaggagaagcggaagc 834
>gb|AY533508.1| Treponema pallidum subsp. pallidum isolate Bal-3 TprI gene, complete cds Length = 1906 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 856 ggcgaaggagaagcggaagc 837
>ref|XM_824433.1| Trypanosoma brucei TREU927 phosphatidylinositol 3-related kinase (Tb11.01.6300) partial mRNA Length = 8583 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 agctgtacctcatgtccaggtaca 217 ||||| |||||||||||||||||| Sbjct: 5792 agctgcacctcatgtccaggtaca 5815
>ref|XM_765080.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_572_28016_30382) partial mRNA Length = 2367 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 gagtcaagagtctctcttgc 150 |||||||||||||||||||| Sbjct: 1678 gagtcaagagtctctcttgc 1659
>gb|AY364312.1| Oryza sativa (japonica cultivar-group) Rho GDP dissociation inhibitor 2 mRNA, partial cds Length = 1158 Score = 40.1 bits (20), Expect = 6.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 310 gtgtagggctcctgctgagggctgaatgtccccagcatcacctt 353 ||||| |||||| ||||||||||||| || || |||||| |||| Sbjct: 644 gtgtacggctccagctgagggctgaacgtgccaagcatctcctt 601
>gb|AY158568.1| Treponema pallidum clone 5C-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158567.1| Treponema pallidum clone 5B-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158566.1| Treponema pallidum clone 5A-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158565.1| Treponema pallidum clone 11C-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158564.1| Treponema pallidum clone 11B-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158563.1| Treponema pallidum clone 11A-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158562.1| Treponema pallidum clone 8C-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158561.1| Treponema pallidum clone 8B-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158560.1| Treponema pallidum clone 8A-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158559.1| Treponema pallidum clone 7C-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158558.1| Treponema pallidum clone 7B-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158557.1| Treponema pallidum clone 7A-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158556.1| Treponema pallidum clone 4C-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158555.1| Treponema pallidum clone 4B-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158554.1| Treponema pallidum clone 4A-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158553.1| Treponema pallidum clone 2C-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158552.1| Treponema pallidum clone 2B-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158551.1| Treponema pallidum clone 2A-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158550.1| Treponema pallidum clone 10B-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158549.1| Treponema pallidum clone 10A-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158548.1| Treponema pallidum clone 10C-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158547.1| Treponema pallidum clone 9B-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158546.1| Treponema pallidum clone 9A-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158545.1| Treponema pallidum clone 9C-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158544.1| Treponema pallidum clone 6C-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158543.1| Treponema pallidum clone 6B-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158541.1| Treponema pallidum clone 3C-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158540.1| Treponema pallidum clone 3B-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158539.1| Treponema pallidum clone 3A-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158538.1| Treponema pallidum clone 1C-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158537.1| Treponema pallidum clone 1B-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>gb|AY158536.1| Treponema pallidum clone 1A-J TprJ (tprJ) gene, partial cds Length = 1074 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 264 ggcgaaggagaagcggaagc 245
>emb|CR387929.4| Zebrafish DNA sequence from clone DKEY-172H18 in linkage group 5, complete sequence Length = 245364 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 aataataataaacatcacctaaca 34 |||||||||||||||||| ||||| Sbjct: 232584 aataataataaacatcacataaca 232561
>gb|AF334830.1| Homo sapiens cartilage-hair hypoplasia region gene sequence Length = 138754 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 cttctggttctccactctta 370 |||||||||||||||||||| Sbjct: 36125 cttctggttctccactctta 36106
>emb|BX511101.3| Zebrafish DNA sequence from clone DKEYP-92F1 in linkage group 2, complete sequence Length = 81968 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 aataataataaacatcacctaaca 34 |||||||||||||||||| ||||| Sbjct: 6217 aataataataaacatcacataaca 6240
>dbj|AK040321.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430087A18 product:unclassifiable, full insert sequence Length = 2574 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cacacaataataataaacat 25 |||||||||||||||||||| Sbjct: 1414 cacacaataataataaacat 1433
>emb|AL928617.13| Mouse DNA sequence from clone RP23-326E21 on chromosome 2, complete sequence Length = 190652 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 cttctggttctccactctta 370 |||||||||||||||||||| Sbjct: 2526 cttctggttctccactctta 2545
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 acacaataataataaacatc 26 |||||||||||||||||||| Sbjct: 11104058 acacaataataataaacatc 11104039
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.1 Identities = 38/44 (86%) Strand = Plus / Plus Query: 310 gtgtagggctcctgctgagggctgaatgtccccagcatcacctt 353 ||||| |||||| ||||||||||||| || || |||||| |||| Sbjct: 12166267 gtgtacggctccagctgagggctgaacgtgccaagcatctcctt 12166310
>gb|AF261077.1|AF261077 Treponema pallidum strain SS14 clone 3 TprJ gene, complete cds Length = 2277 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 849 ggcgaaggagaagcggaagc 830
>gb|AF261075.1|AF261075 Treponema pallidum strain SS14 clone 1 TprJ gene, complete cds Length = 2277 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 849 ggcgaaggagaagcggaagc 830
>gb|AC112187.2| Homo sapiens chromosome 5 clone RP11-269M20, complete sequence Length = 186165 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 78 catctcatctttcagaccaacccttgctaggt 109 |||||| ||||||||||||||| |||||||| Sbjct: 144682 catctcttctttcagaccaacctgtgctaggt 144713
>gb|AF217541.1|AF217541 Treponema pallidum subsp. pallidum strain Sea81-4 TprD2 (tprD) gene, tprD-2 allele, complete cds Length = 2353 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 1244 ggcgaaggagaagcggaagc 1225
>gb|AF217540.1|AF217540 Treponema pallidum subsp. pallidum strain Sea81-3 TprD2 (tprD) gene, tprD-2 allele, complete cds Length = 2353 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 1244 ggcgaaggagaagcggaagc 1225
>gb|AF217539.1|AF217539 Treponema pallidum subsp. pallidum strain MexicoA TprD (tprD) gene, tprD-2 allele, complete cds Length = 2353 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 1244 ggcgaaggagaagcggaagc 1225
>gb|AF217538.1|AF217538 Treponema pallidum subsp. pertenue TprD3 (tprD) gene, tprD-3 allele, complete cds Length = 2349 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 1234 ggcgaaggagaagcggaagc 1215
>gb|AF217537.1|AF217537 Treponema pallidum subsp. pallidum strain Bal-7 TprD (tprD) gene, complete cds Length = 2359 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 1244 ggcgaaggagaagcggaagc 1225
>gb|AF187953.1|AF187953 Treponema pallidum subsp. pallidum isolate Mexico A TprD (tprD) gene, partial cds Length = 594 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 45 ggcgaaggagaagcggaagc 26
>gb|AF187952.1|AF187952 Treponema pallidum subsp. pallidum isolate Bal-3 TprD (tprD) gene, complete cds Length = 2354 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 1245 ggcgaaggagaagcggaagc 1226
>dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0592B08 Length = 131096 Score = 40.1 bits (20), Expect = 6.1 Identities = 38/44 (86%) Strand = Plus / Plus Query: 310 gtgtagggctcctgctgagggctgaatgtccccagcatcacctt 353 ||||| |||||| ||||||||||||| || || |||||| |||| Sbjct: 3289 gtgtacggctccagctgagggctgaacgtgccaagcatctcctt 3332
>dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468A12 Length = 143018 Score = 40.1 bits (20), Expect = 6.1 Identities = 38/44 (86%) Strand = Plus / Plus Query: 310 gtgtagggctcctgctgagggctgaatgtccccagcatcacctt 353 ||||| |||||| ||||||||||||| || || |||||| |||| Sbjct: 109056 gtgtacggctccagctgagggctgaacgtgccaagcatctcctt 109099
>dbj|AK065671.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041C14, full insert sequence Length = 1208 Score = 40.1 bits (20), Expect = 6.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 310 gtgtagggctcctgctgagggctgaatgtccccagcatcacctt 353 ||||| |||||| ||||||||||||| || || |||||| |||| Sbjct: 760 gtgtacggctccagctgagggctgaacgtgccaagcatctcctt 717
>dbj|AK060873.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-H12, full insert sequence Length = 1321 Score = 40.1 bits (20), Expect = 6.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 310 gtgtagggctcctgctgagggctgaatgtccccagcatcacctt 353 ||||| |||||| ||||||||||||| || || |||||| |||| Sbjct: 801 gtgtacggctccagctgagggctgaacgtgccaagcatctcctt 758
>emb|CR790363.24| Zebrafish DNA sequence from clone DKEY-175D9 in linkage group 3, complete sequence Length = 139765 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 taaactaaacattcatctca 84 |||||||||||||||||||| Sbjct: 63883 taaactaaacattcatctca 63864
>emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5) Length = 896449 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 ccaggtacaccttcccatcatcat 232 |||||||||||||||| ||||||| Sbjct: 515588 ccaggtacaccttcccttcatcat 515565
>gb|AC154388.4| Mus musculus BAC clone RP23-14P7 from chromosome 14, complete sequence Length = 246800 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 gagtcaagagtctctcttgctctt 154 |||||||||||||||||| ||||| Sbjct: 240924 gagtcaagagtctctctttctctt 240901
>emb|AL389899.1|NCB7J19 Neurospora crassa DNA linkage group II BAC clone B7J19 Length = 57906 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 297 ttcggccttgtacgtgtagggctc 320 |||||||||||||||| ||||||| Sbjct: 28617 ttcggccttgtacgtgaagggctc 28640
>gb|AY685240.1| Treponema paraluiscuniculi nonfunctional TprG2 gene, complete sequence Length = 3018 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 1084 ggcgaaggagaagcggaagc 1065
>gb|AY685239.1| Treponema paraluiscuniculi nonfunctional TprG1 gene, complete sequence Length = 3257 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 1351 ggcgaaggagaagcggaagc 1332
>gb|AY685238.1| Treponema paraluiscuniculi nonfunctional TprG and TprI genes, complete sequence Length = 2459 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 1029 ggcgaaggagaagcggaagc 1010
>gb|AY685237.1| Treponema paraluiscuniculi nonfunctional TprD gene, complete sequence Length = 2792 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 1376 ggcgaaggagaagcggaagc 1357
>gb|AY685236.1| Treponema paraluiscuniculi nonfunctional TprC gene, complete sequence Length = 1916 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 854 ggcgaaggagaagcggaagc 835
>emb|CT030647.17| Mouse DNA sequence from clone RP23-379I9 on chromosome 14, complete sequence Length = 205598 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 gagtcaagagtctctcttgctctt 154 |||||||||||||||||| ||||| Sbjct: 106434 gagtcaagagtctctctttctctt 106411
>gb|AF073527.1|AF073527 Treponema pallidum subsp. pertenue tprJ gene homolog (tprJ) gene, complete cds Length = 2508 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 939 ggcgaaggagaagcggaagc 920
>gb|U88957.1|TPU88957 Treponema pallidum major outer sheath protein homolog Msp (msp) gene, complete cds Length = 2521 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 941 ggcgaaggagaagcggaagc 922
>gb|AE000520.1| Treponema pallidum subsp. pallidum str. Nichols complete genome Length = 1138011 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 976347 ggcgaaggagaagcggaagc 976366 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 674373 ggcgaaggagaagcggaagc 674392 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 672069 ggcgaaggagaagcggaagc 672088 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 333815 ggcgaaggagaagcggaagc 333834 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 331516 ggcgaaggagaagcggaagc 331535 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 328833 ggcgaaggagaagcggaagc 328814 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 152079 ggcgaaggagaagcggaagc 152098 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 135879 ggcgaaggagaagcggaagc 135898
>emb|AL832752.1|HSM804063 Homo sapiens mRNA; cDNA DKFZp686A0127 (from clone DKFZp686A0127) Length = 5643 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cacacaataataataaacat 25 |||||||||||||||||||| Sbjct: 5530 cacacaataataataaacat 5511
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 acacaataataataaacatc 26 |||||||||||||||||||| Sbjct: 11183247 acacaataataataaacatc 11183228
>emb|AL133410.32| Human DNA sequence from clone RP11-112J3 on chromosome 9p13.1-13.3 Contains the 3' end of the CA9 gene for carbonic anhydrase IX (MN), the TPM2 gene for tropomyosin 2 (beta) (DA1, TMSB, AMCD1), the TLN1 gene for talin 1 (TLN, KIAA1027), the CREB3 gene for cAMP responsive element binding protein 3 (luman) (LZIP, LUMAN, MGC15333, MGC19782), the GBA2 gene for glucosidase, beta (bile acid) 2 (AD035, KIAA1605, MGC16895, DKFZp762K054), a novel gene (KIAA0258), five novel genes, the NPR2 gene for natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B) (NPRB, ANPRB, GUC2B, NPRBi), the SPAG8 gene for sperm associated antigen 8 (SMP1, BS-84, HSD-1, hSMP-1, MGC26201), the HINT2 gene for Histidine triad nucleotide binding protein 2, the gene for NAG-5 protein (LOC51754), an olfactory receptor pseudogene, the gene for a novel seven transmembrane helix receptor, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5,13kDa (B13, NUFM, UQOR13, FLJ12147, CI-13KD-B) (NDUFA5) pseudogene and six CpG islands, complete sequence Length = 195379 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 cttctggttctccactctta 370 |||||||||||||||||||| Sbjct: 147809 cttctggttctccactctta 147790
>gb|AC132945.3| Mus musculus BAC clone RP24-321A15 from 8, complete sequence Length = 230047 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 cacacaataataataaacat 25 |||||||||||||||||||| Sbjct: 116503 cacacaataataataaacat 116484
>gb|AF045437.1| Treponema pallidum clone 5 putative outer membrane protein gene, partial cds Length = 1291 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 432 ggcgaaggagaagcggaagc 413
>gb|AF045436.1| Treponema pallidum clone 7 putative outer membrane protein gene, partial cds Length = 1291 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 432 ggcgaaggagaagcggaagc 413
>gb|AF045435.1| Treponema pallidum clones 2, 3 and 8 putative outer membrane protein gene, partial cds Length = 1291 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 432 ggcgaaggagaagcggaagc 413
>gb|AF045434.1| Treponema pallidum clones 6 and 16 putative outer membrane protein gene, partial cds Length = 1705 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 432 ggcgaaggagaagcggaagc 413
>gb|AF045433.1| Treponema pallidum clones 1, 2, 4, 5 and 7 putative outer membrane protein gene, partial cds Length = 1687 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggcgaaggagaagcggaagc 448 |||||||||||||||||||| Sbjct: 432 ggcgaaggagaagcggaagc 413
>emb|AL831770.3| Human DNA sequence from clone RP13-297M11 on chromosome 1, complete sequence Length = 151857 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 78 catctcatctttcagaccaacccttgctaggt 109 |||||| ||||||||||||||| |||||||| Sbjct: 113396 catctcttctttcagaccaacctgtgctaggt 113365 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,377,720 Number of Sequences: 3902068 Number of extensions: 5377720 Number of successful extensions: 100615 Number of sequences better than 10.0: 126 Number of HSP's better than 10.0 without gapping: 123 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 100331 Number of HSP's gapped (non-prelim): 289 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)