ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19j21 |
|---|---|
| Clone Library Name | barley_pub |
>CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive protein 2| Length = 544 Score = 72.0 bits (175), Expect = 1e-12 Identities = 33/48 (68%), Positives = 38/48 (79%) Frame = -1 Query: 633 RPYPLSALVNNTIRALLNGYNSYYKLEEKDGVIYLGWKNRKLVVSSAW 490 RP PLS+LVN TIR LL Y+ YKL E+DG +YLGWK+R LVVSSAW Sbjct: 496 RPSPLSSLVNATIRTLLQSYSDNYKLAERDGALYLGWKSRPLVVSSAW 543
>CIGR1_ORYSA (Q69VG1) Chitin-inducible gibberellin-responsive protein 1| Length = 571 Score = 64.3 bits (155), Expect = 3e-10 Identities = 28/48 (58%), Positives = 37/48 (77%) Frame = -1 Query: 633 RPYPLSALVNNTIRALLNGYNSYYKLEEKDGVIYLGWKNRKLVVSSAW 490 RPYPLS+ VN+ IR LL Y+ Y L+EKDG + LGW++RKL+ +SAW Sbjct: 523 RPYPLSSYVNSVIRKLLACYSDKYTLDEKDGAMLLGWRSRKLISASAW 570
>DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8)| Length = 630 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/39 (48%), Positives = 27/39 (69%) Frame = -1 Query: 603 NTIRALLNGYNSYYKLEEKDGVIYLGWKNRKLVVSSAWR 487 +T+ AL G + Y ++EEKDG + LGW R L+ +SAWR Sbjct: 586 STLLALFAGGDGY-RVEEKDGCLTLGWHTRPLIATSAWR 623
>SLN1_HORVU (Q8W127) DELLA protein SLN1 (Slender protein 1)| Length = 618 Score = 41.2 bits (95), Expect = 0.003 Identities = 19/39 (48%), Positives = 27/39 (69%) Frame = -1 Query: 603 NTIRALLNGYNSYYKLEEKDGVIYLGWKNRKLVVSSAWR 487 +T+ AL G + Y K+EEK+G + LGW R L+ +SAWR Sbjct: 577 STLLALFAGGDGY-KVEEKEGCLTLGWHTRPLIATSAWR 614
>RHT1_WHEAT (Q9ST59) DELLA protein RHT-1 (Reduced height protein 1) (Protein| Rht-B1/Rht-D1) Length = 623 Score = 41.2 bits (95), Expect = 0.003 Identities = 19/39 (48%), Positives = 27/39 (69%) Frame = -1 Query: 603 NTIRALLNGYNSYYKLEEKDGVIYLGWKNRKLVVSSAWR 487 +T+ AL G + Y K+EEK+G + LGW R L+ +SAWR Sbjct: 582 STLLALFAGGDGY-KVEEKEGCLTLGWHTRPLIATSAWR 619
>SLR1_ORYSA (Q7G7J6) DELLA protein SLR1 (Protein SLENDER RICE1) (Gibberellic| acid-insensitive mutant protein) (OsGAI) Length = 625 Score = 40.0 bits (92), Expect = 0.006 Identities = 18/39 (46%), Positives = 27/39 (69%) Frame = -1 Query: 603 NTIRALLNGYNSYYKLEEKDGVIYLGWKNRKLVVSSAWR 487 +T+ AL G + Y ++EEK+G + LGW R L+ +SAWR Sbjct: 584 STLLALFAGGDGY-RVEEKEGCLTLGWHTRPLIATSAWR 621
>GAI_ARATH (Q9LQT8) DELLA protein GAI (Gibberellic acid-insensitive mutant| protein) (Restoration of growth on ammonia protein 2) Length = 533 Score = 39.3 bits (90), Expect = 0.010 Identities = 17/35 (48%), Positives = 23/35 (65%) Frame = -1 Query: 591 ALLNGYNSYYKLEEKDGVIYLGWKNRKLVVSSAWR 487 AL NG Y ++EE DG + LGW R L+ +SAW+ Sbjct: 496 ALFNGGEGY-RVEESDGCLMLGWHTRPLIATSAWK 529
>RGL2_ARATH (Q8GXW1) DELLA protein RGL2 (RGA-like protein 2) (Scarecrow-like| protein 19) Length = 547 Score = 37.4 bits (85), Expect = 0.037 Identities = 12/26 (46%), Positives = 20/26 (76%) Frame = -1 Query: 564 YKLEEKDGVIYLGWKNRKLVVSSAWR 487 Y++EE DG + +GW+ R L+ +SAW+ Sbjct: 520 YRVEENDGCLMIGWQTRPLITTSAWK 545
>RGA2_BRACM (Q5BN22) DELLA protein RGA2 (RGA-like protein 2) (BrRGA2)| Length = 579 Score = 37.4 bits (85), Expect = 0.037 Identities = 16/35 (45%), Positives = 23/35 (65%) Frame = -1 Query: 591 ALLNGYNSYYKLEEKDGVIYLGWKNRKLVVSSAWR 487 AL NG Y ++EE +G + LGW R L+ +SAW+ Sbjct: 541 ALFNGGEGY-RVEENNGCLMLGWHTRPLITTSAWK 574
>RGA1_BRACM (Q5BN23) DELLA protein RGA1 (RGA-like protein 1) (BrRGA1)| Length = 573 Score = 37.4 bits (85), Expect = 0.037 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = -1 Query: 603 NTIRALLNGYNSYYKLEEKDGVIYLGWKNRKLVVSSAWR 487 +T+ AL NG Y ++EE +G + L W R L+ +SAW+ Sbjct: 531 STLLALFNGGEGY-RVEENNGCLMLSWHTRPLITTSAWK 568
>GAI_LYCES (Q7Y1B6) DELLA protein GAI (Gibberellic acid-insensitive mutant| protein) Length = 588 Score = 37.4 bits (85), Expect = 0.037 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = -1 Query: 564 YKLEEKDGVIYLGWKNRKLVVSSAWR 487 Y++EE DG + LGW R L+ +SAW+ Sbjct: 549 YRVEENDGCLMLGWHTRPLIATSAWK 574
>GAIPB_CUCMA (Q6EI05) DELLA protein GAIP-B (Gibberellic acid-insensitive phloem| protein B) (GAIP-B) (CmGAIP-B) Length = 587 Score = 37.0 bits (84), Expect = 0.049 Identities = 15/33 (45%), Positives = 22/33 (66%) Frame = -1 Query: 585 LNGYNSYYKLEEKDGVIYLGWKNRKLVVSSAWR 487 L G Y++EE +G + LGW R L+V+SAW+ Sbjct: 545 LFGSGEGYRVEENNGSLTLGWHTRPLIVTSAWK 577
>RGL1_ARATH (Q9C8Y3) DELLA protein RGL1 (RGA-like protein 1) (RGA-like protein)| Length = 511 Score = 37.0 bits (84), Expect = 0.049 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = -1 Query: 564 YKLEEKDGVIYLGWKNRKLVVSSAWR 487 Y +EE +G + LGW+ R L+ +SAWR Sbjct: 481 YNVEENEGCLLLGWQTRPLIATSAWR 506
>GAIP_CUCMA (Q6EI06) DELLA protein GAIP (Gibberellic acid-insensitive phloem| protein) (GAIP) (CmGAIP) Length = 579 Score = 37.0 bits (84), Expect = 0.049 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = -1 Query: 618 SALVNNTIRALLNGYNSYYKLEEKDGVIYLGWKNRKLVVSSAWR 487 +A +I L G Y++EE +G + LGW R L+ +SAW+ Sbjct: 527 NAFKQASILLALFGSGEGYRVEENEGSLMLGWHTRPLIATSAWK 570
>RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mutant)| (GAI-related sequence) (Restoration of growth on ammonia protein 1) Length = 587 Score = 36.6 bits (83), Expect = 0.064 Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 2/36 (5%) Frame = -1 Query: 588 LLNGYNSY--YKLEEKDGVIYLGWKNRKLVVSSAWR 487 LL+ +NS Y++EE +G + LGW R L+ +SAW+ Sbjct: 546 LLSVFNSGQGYRVEESNGCLMLGWHTRPLITTSAWK 581
>RGL3_ARATH (Q9LF53) DELLA protein RGL3 (RGA-like protein 3)| Length = 523 Score = 36.2 bits (82), Expect = 0.083 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = -1 Query: 585 LNGYNSYYKLEEKDGVIYLGWKNRKLVVSSAWR 487 L+G Y++EE DG + L W+ + L+ +SAW+ Sbjct: 484 LSGGGDGYRVEENDGSLMLAWQTKPLIAASAWK 516
>GAI1_VITVI (Q8S4W7) DELLA protein GAI1 (Gibberellic acid-insensitive mutant| protein 1) (VvGAI1) Length = 590 Score = 35.0 bits (79), Expect = 0.19 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = -1 Query: 564 YKLEEKDGVIYLGWKNRKLVVSSAWR 487 Y++EE +G + LGW R L+ +SAW+ Sbjct: 550 YRVEENNGCLMLGWHTRPLIATSAWQ 575
>MOC_ORYSA (Q84MM9) Protein MONOCULM 1| Length = 441 Score = 33.5 bits (75), Expect = 0.54 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = -1 Query: 624 PLSALVNNTIRALLNGY--NSYYKLEEKDGVIYLGWKNRKLVVSSAWR 487 PLSA + R LL + + Y ++E G +LGW+ R L+ SAW+ Sbjct: 390 PLSAFAVSQARLLLRLHYPSEGYLVQEARGACFLGWQTRPLLSVSAWQ 437
>UHPT_SHIFL (P0AGC2) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 2.7 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +2 Query: 323 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 403 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>UHPT_SALTY (P27670) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 2.7 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +2 Query: 323 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 403 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>UHPT_ECOLI (P0AGC0) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 2.7 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +2 Query: 323 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 403 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>UHPT_ECO57 (P0AGC1) Hexose phosphate transport protein| Length = 463 Score = 31.2 bits (69), Expect = 2.7 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +2 Query: 323 CAQGRVDSWAPRSKQPQFFGLWN-SHSL 403 C+ + W PR K+ F G WN SH+L Sbjct: 143 CSYSTITKWTPRRKRGTFLGFWNISHNL 170
>ASH2_SCHPO (O60070) Set1 complex component ash2 (Set1C component ash2)| (COMPASS component ash2) (Complex proteins associated with set1 protein ash2) (Lid2 complex component ash2) (Lid2C component ash2) Length = 652 Score = 30.8 bits (68), Expect = 3.5 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 2/85 (2%) Frame = +3 Query: 366 SHSSLDYGIHIR*LGSTLDLCAEHKAMKEPKQASSIFKNVTAMQKIQPAFCSSIQDK*HH 545 +H S DYG+ ++ +K P +ASS+ N Q +C +D+ Sbjct: 3 AHGSNDYGVSLK----------GNKTGSSPSKASSLNWNEPHTLNEQNTYCYCGKDRNLR 52 Query: 546 LSPLACSSCCN--HLTVL**YCSPM 614 L CS C N HL+ L C+ M Sbjct: 53 FPDLQCSVCLNMFHLSCLSPPCTSM 77
>FA26B_RAT (Q5RJQ8) Protein FAM26B| Length = 323 Score = 30.0 bits (66), Expect = 6.0 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 423 NPRWNLISECEFHNPKNC 370 N WNL++EC++ KNC Sbjct: 77 NHTWNLVAECQYRRAKNC 94
>FA26B_MOUSE (Q8VEC4) Protein FAM26B| Length = 323 Score = 30.0 bits (66), Expect = 6.0 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 423 NPRWNLISECEFHNPKNC 370 N WNL++EC++ KNC Sbjct: 77 NHTWNLVAECQYRRAKNC 94 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,037,020 Number of Sequences: 219361 Number of extensions: 2005033 Number of successful extensions: 4411 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4297 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4411 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
