Clone Information

BLAST Search Result

Clone Name	rbasd19j21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK073386.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	180	4e-42
2	gb\|AC150751.1\| Oryza sativa (japonica cultivar-group) chromosome...	165	2e-37
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	165	2e-37
4	gb\|AC116604.1\| Genomic sequence for Oryza sativa, Nipponbare str...	165	2e-37
5	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	165	2e-37
6	gb\|AY109543.1\| Zea mays CL854_1 mRNA sequence	82	3e-12
7	gb\|AC113335.1\| Genomic sequence for Oryza sativa (japonica culti...	76	2e-10
8	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	76	2e-10
9	dbj\|AK058352.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	76	2e-10
10	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	76	2e-10
11	ref\|NM_196102.1\| Oryza sativa (japonica cultivar-group) putative...	74	6e-10
12	gb\|AC119218.7\| Mus musculus chromosome 7, clone RP24-200I20, com...	46	0.14
13	gb\|AC108832.10\| Mus musculus chromosome 7, clone RP23-242J3, com...	46	0.14
14	emb\|AL929062.10\| Mouse DNA sequence from clone RP23-342J9 on chr...	44	0.55
15	gb\|AC154675.2\| Mus musculus BAC clone RP23-143J5 from chromosome...	42	2.2
16	emb\|AL162723.12\| Human DNA sequence from clone RP13-428K23 on ch...	42	2.2
17	dbj\|BS000589.1\| Pan troglodytes chromosome Y clone:PTB-234J08, c...	42	2.2
18	dbj\|BS000592.1\| Pan troglodytes chromosome Y clone:PTB-024O19, c...	42	2.2
19	gb\|DP000054.1\| Pan troglodytes chromosome Y, partial sequence	42	2.2
20	gb\|AC011416.3\| Homo sapiens chromosome 5 clone CTB-88F18, comple...	42	2.2
21	gb\|AC154504.2\| Mus musculus BAC clone RP24-92H14 from chromosome...	42	2.2
22	gb\|AC151722.2\| Pan troglodytes BAC clone CH251-580N2 from chromo...	42	2.2
23	gb\|AC005915.1\|AC005915 Homo sapiens chromosome 5, Bac clone 58g1...	42	2.2
24	emb\|AL805930.16\| Mouse DNA sequence from clone RP23-455B8 on chr...	42	2.2
25	gb\|AC161219.4\| Mus musculus chromosome 7, clone RP23-83E16, comp...	40	8.6
26	gb\|AC150310.1\| Latimeria menadoensis clone VMRC4-40C18, complete...	40	8.6
27	gb\|AC147091.2\| Pan troglodytes BAC clone RP43-57O16 from 7, comp...	40	8.6
28	gb\|AC182655.2\| Populus trichocarpa clone Pop1-121O5, complete se...	40	8.6
29	emb\|CT010495.9\| Mouse DNA sequence from clone RP23-226G14 on chr...	40	8.6
30	gb\|AC145920.1\| Pan troglodytes BAC clone RP43-10C15 from 7, comp...	40	8.6
31	emb\|AL513191.4\| Human DNA sequence from clone RP11-224F24 on chr...	40	8.6
32	emb\|AL157770.12\| Human DNA sequence from clone RP11-490N5 on chr...	40	8.6
33	gb\|AC092554.3\| Papio anubis clone RP41-414G17, complete sequence	40	8.6
34	emb\|AL034422.24\|HS1141E15 Human DNA sequence from clone RP5-1141...	40	8.6
35	emb\|AL645522.12\| Mouse DNA sequence from clone RP23-64E17 on chr...	40	8.6
36	gb\|AC108217.3\| Homo sapiens BAC clone RP11-681L8 from 4, complet...	40	8.6
37	gb\|AC084200.22\| Homo sapiens 12q BAC RP11-654D12 (Roswell Park C...	40	8.6
38	gb\|DP000003.1\| Atelerix albiventris target 1 genomic scaffold	40	8.6
39	gb\|AC157954.2\| Pan troglodytes BAC clone CH251-514O14 from chrom...	40	8.6
40	gb\|AE015928.1\| Bacteroides thetaiotaomicron VPI-5482, complete g...	40	8.6
41	gb\|AC039057.8\|AC039057 Homo sapiens chromosome 15 clone RP11-81G...	40	8.6
42	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
43	emb\|AJ507388.2\|SMO507388 Soybean mosaic virus gene for polyprote...	40	8.6
44	gb\|AC092574.2\| Homo sapiens BAC clone RP11-2H3 from 4, complete ...	40	8.6
45	gb\|AC147317.3\| Pan troglodytes BAC clone RP43-49P4 from chromoso...	40	8.6
46	gb\|AC099850.7\| Homo sapiens chromosome 17, clone CTD-2510F5, com...	40	8.6
47	gb\|AF272983.1\|AF272983 Homo sapiens SRC tyrosine kinase gene, ex...	40	8.6
48	gb\|AC007285.3\|AC007285 Homo sapiens BAC clone RP11-576P10 from 7...	40	8.6
49	gb\|AC150469.3\| Atelerix albiventris clone LB4-498C22, complete s...	40	8.6
50	dbj\|AP005483.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.6
51	gb\|AC114632.9\| Mus musculus chromosome 5, clone RP24-114E20, com...	40	8.6
52	gb\|AC154423.2\| Mus musculus BAC clone RP24-221B7 from 17, comple...	40	8.6
53	gb\|AC102304.6\| Mus musculus chromosome 7, clone RP24-403P14, com...	40	8.6
54	emb\|Z79756.1\|CEF53C11 Caenorhabditis elegans Cosmid F53C11, comp...	40	8.6
55	gb\|AE017125.1\| Helicobacter hepaticus ATCC 51449, complete genome	40	8.6
56	emb\|AL359237.4\|CNS05TEO Human chromosome 14 DNA sequence BAC R-1...	40	8.6
57	emb\|AL158059.3\|CNS01RGK Human chromosome 14 DNA sequence BAC C-2...	40	8.6

>dbj|AK073386.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041E22, full
            insert sequence
          Length = 2582

 Score =  180 bits (91), Expect = 4e-42
 Identities = 193/225 (85%), Gaps = 4/225 (1%)
 Strand = Plus / Minus

                                                                        
Query: 407  aggttccaccttggatttatgtgccgaacacaaagccatgaaagaacctaaacaagcttc 466
            ||||||||||||||||| ||| | | | ||  |||||| ||||||||||||| |||||||
Sbjct: 2176 aggttccaccttggattcatgcgtccaccaagaagccacgaaagaacctaaagaagcttc 2117

                                                                        
Query: 467  ttccatattcaa---ga-atgtcaccgccatgcagaagatacaaccagctttctgttctt 522
            ||||| ||| |    || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2116 ttccaaattaacacggagatgtcaccgccatgcagaagatacaaccagctttctgttctt 2057

                                                                        
Query: 523  ccatccaagataaatgacaccatctttctcctctagcttgtagtagctgttgtaaccatt 582
            |||||||||||||| | |||||||| ||||||||||||||||||| |||| ||||| || 
Sbjct: 2056 ccatccaagataaagggcaccatctctctcctctagcttgtagtaactgtggtaactatc 1997

                                                         
Query: 583  taacagtgctctgatagtattgttcaccaatgcacttagtgggta 627
             | ||    | ||||||| |||||||||| |||||||||||||||
Sbjct: 1996 cagcaactttttgatagtgttgttcaccagtgcacttagtgggta 1952

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>gb|AC150751.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNOa0279P04, complete sequence
          Length = 32479

 Score =  165 bits (83), Expect = 2e-37
 Identities = 131/147 (89%)
 Strand = Plus / Minus

                                                                         
Query: 481   atgtcaccgccatgcagaagatacaaccagctttctgttcttccatccaagataaatgac 540
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 17761 atgtcaccgccatgcagaagatacaaccagctttctgttcttccatccaagataaagggc 17702

                                                                         
Query: 541   accatctttctcctctagcttgtagtagctgttgtaaccatttaacagtgctctgatagt 600
             ||||||| ||||||||||||||||||| |||| ||||| ||  | ||    | |||||||
Sbjct: 17701 accatctctctcctctagcttgtagtaactgtggtaactatccagcaactttttgatagt 17642

                                        
Query: 601   attgttcaccaatgcacttagtgggta 627
              |||||||||| |||||||||||||||
Sbjct: 17641 gttgttcaccagtgcacttagtgggta 17615

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  165 bits (83), Expect = 2e-37
 Identities = 131/147 (89%)
 Strand = Plus / Minus

                                                                           
Query: 481     atgtcaccgccatgcagaagatacaaccagctttctgttcttccatccaagataaatgac 540
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 4834125 atgtcaccgccatgcagaagatacaaccagctttctgttcttccatccaagataaagggc 4834066

                                                                           
Query: 541     accatctttctcctctagcttgtagtagctgttgtaaccatttaacagtgctctgatagt 600
               ||||||| ||||||||||||||||||| |||| ||||| ||  | ||    | |||||||
Sbjct: 4834065 accatctctctcctctagcttgtagtaactgtggtaactatccagcaactttttgatagt 4834006

                                          
Query: 601     attgttcaccaatgcacttagtgggta 627
                |||||||||| |||||||||||||||
Sbjct: 4834005 gttgttcaccagtgcacttagtgggta 4833979

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>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBb0019D17, from chromosome 3, complete sequence
          Length = 129658

 Score =  165 bits (83), Expect = 2e-37
 Identities = 131/147 (89%)
 Strand = Plus / Plus

                                                                        
Query: 481  atgtcaccgccatgcagaagatacaaccagctttctgttcttccatccaagataaatgac 540
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 1330 atgtcaccgccatgcagaagatacaaccagctttctgttcttccatccaagataaagggc 1389

                                                                        
Query: 541  accatctttctcctctagcttgtagtagctgttgtaaccatttaacagtgctctgatagt 600
            ||||||| ||||||||||||||||||| |||| ||||| ||  | ||    | |||||||
Sbjct: 1390 accatctctctcctctagcttgtagtaactgtggtaactatccagcaactttttgatagt 1449

                                       
Query: 601  attgttcaccaatgcacttagtgggta 627
             |||||||||| |||||||||||||||
Sbjct: 1450 gttgttcaccagtgcacttagtgggta 1476

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  165 bits (83), Expect = 2e-37
 Identities = 131/147 (89%)
 Strand = Plus / Minus

                                                                           
Query: 481     atgtcaccgccatgcagaagatacaaccagctttctgttcttccatccaagataaatgac 540
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 4834240 atgtcaccgccatgcagaagatacaaccagctttctgttcttccatccaagataaagggc 4834181

                                                                           
Query: 541     accatctttctcctctagcttgtagtagctgttgtaaccatttaacagtgctctgatagt 600
               ||||||| ||||||||||||||||||| |||| ||||| ||  | ||    | |||||||
Sbjct: 4834180 accatctctctcctctagcttgtagtaactgtggtaactatccagcaactttttgatagt 4834121

                                          
Query: 601     attgttcaccaatgcacttagtgggta 627
                |||||||||| |||||||||||||||
Sbjct: 4834120 gttgttcaccagtgcacttagtgggta 4834094

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>gb|AY109543.1| Zea mays CL854_1 mRNA sequence
          Length = 2341

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                        
Query: 494  gcagaagatacaaccagctttctgttcttccatccaagataaatgacaccatctttctcc 553
            ||||||||||| |||||||||||||||||||| |||||||||| ||  |||||| |||||
Sbjct: 1941 gcagaagatacgaccagctttctgttcttccagccaagataaaggatgccatctctctcc 1882

                                     
Query: 554  tctagcttgtagtagctgttgtaac 578
            || ||| |||| | ||||| |||||
Sbjct: 1881 tcaagcctgtaatggctgtggtaac 1857



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 405  ttaggttccaccttggatttatgtgccgaac 435
            ||||||||||||||||||| |||||| ||||
Sbjct: 2041 ttaggttccaccttggattcatgtgctgaac 2011

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>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1003C07, from chromosome 10, complete
             sequence
          Length = 115188

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 122/150 (81%)
 Strand = Plus / Minus

                                                                         
Query: 481   atgtcaccgccatgcagaagatacaaccagctttctgttcttccatccaagataaatgac 540
             |||||| | ||||||||||||||||||||    |||||||||||||||||| ||||  ||
Sbjct: 68995 atgtcaacaccatgcagaagatacaaccaatactctgttcttccatccaaggtaaagaac 68936

                                                                         
Query: 541   accatctttctcctctagcttgtagtagctgttgtaaccatttaacagtgctctgatagt 600
             |||||||  |||||| ||| ||||| |||| ||||||  ||  ||||| | | |||| ||
Sbjct: 68935 accatctcgctcctcaagcctgtagaagctattgtaagtatgcaacagcgttttgatggt 68876

                                           
Query: 601   attgttcaccaatgcacttagtgggtatgg 630
             | ||||||||| || ||| || ||||||||
Sbjct: 68875 actgttcaccactgaactcagcgggtatgg 68846

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 122/150 (81%)
 Strand = Plus / Plus

                                                                            
Query: 481      atgtcaccgccatgcagaagatacaaccagctttctgttcttccatccaagataaatgac 540
                |||||| | ||||||||||||||||||||    |||||||||||||||||| ||||  ||
Sbjct: 11090062 atgtcaacaccatgcagaagatacaaccaatactctgttcttccatccaaggtaaagaac 11090121

                                                                            
Query: 541      accatctttctcctctagcttgtagtagctgttgtaaccatttaacagtgctctgatagt 600
                |||||||  |||||| ||| ||||| |||| ||||||  ||  ||||| | | |||| ||
Sbjct: 11090122 accatctcgctcctcaagcctgtagaagctattgtaagtatgcaacagcgttttgatggt 11090181

                                              
Query: 601      attgttcaccaatgcacttagtgggtatgg 630
                | ||||||||| || ||| || ||||||||
Sbjct: 11090182 actgttcaccactgaactcagcgggtatgg 11090211

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>dbj|AK058352.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-E08, full
           insert sequence
          Length = 1336

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 122/150 (81%)
 Strand = Plus / Minus

                                                                       
Query: 481 atgtcaccgccatgcagaagatacaaccagctttctgttcttccatccaagataaatgac 540
           |||||| | ||||||||||||||||||||    |||||||||||||||||| ||||  ||
Sbjct: 891 atgtcaacaccatgcagaagatacaaccaatactctgttcttccatccaaggtaaagaac 832

                                                                       
Query: 541 accatctttctcctctagcttgtagtagctgttgtaaccatttaacagtgctctgatagt 600
           |||||||  |||||| ||| ||||| |||| ||||||  ||  ||||| | | |||| ||
Sbjct: 831 accatctcgctcctcaagcctgtagaagctattgtaagtatgcaacagcgttttgatggt 772

                                         
Query: 601 attgttcaccaatgcacttagtgggtatgg 630
           | ||||||||| || ||| || ||||||||
Sbjct: 771 actgttcaccactgaactcagcgggtatgg 742

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 122/150 (81%)
 Strand = Plus / Plus

                                                                            
Query: 481      atgtcaccgccatgcagaagatacaaccagctttctgttcttccatccaagataaatgac 540
                |||||| | ||||||||||||||||||||    |||||||||||||||||| ||||  ||
Sbjct: 11096502 atgtcaacaccatgcagaagatacaaccaatactctgttcttccatccaaggtaaagaac 11096561

                                                                            
Query: 541      accatctttctcctctagcttgtagtagctgttgtaaccatttaacagtgctctgatagt 600
                |||||||  |||||| ||| ||||| |||| ||||||  ||  ||||| | | |||| ||
Sbjct: 11096562 accatctcgctcctcaagcctgtagaagctattgtaagtatgcaacagcgttttgatggt 11096621

                                              
Query: 601      attgttcaccaatgcacttagtgggtatgg 630
                | ||||||||| || ||| || ||||||||
Sbjct: 11096622 actgttcaccactgaactcagcgggtatgg 11096651

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>ref|NM_196102.1| Oryza sativa (japonica cultivar-group) putative SCARECROW gene
            regulator-like (OJ1003C07.9), mRNA
          Length = 1575

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 115/141 (81%)
 Strand = Plus / Minus

                                                                        
Query: 490  ccatgcagaagatacaaccagctttctgttcttccatccaagataaatgacaccatcttt 549
            ||||||||||||||||||||    |||||||||||||||||| ||||  |||||||||  
Sbjct: 1569 ccatgcagaagatacaaccaatactctgttcttccatccaaggtaaagaacaccatctcg 1510

                                                                        
Query: 550  ctcctctagcttgtagtagctgttgtaaccatttaacagtgctctgatagtattgttcac 609
            |||||| ||| ||||| |||| ||||||  ||  ||||| | | |||| ||| |||||||
Sbjct: 1509 ctcctcaagcctgtagaagctattgtaagtatgcaacagcgttttgatggtactgttcac 1450

                                 
Query: 610  caatgcacttagtgggtatgg 630
            || || ||| || ||||||||
Sbjct: 1449 cactgaactcagcgggtatgg 1429

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>gb|AC119218.7| Mus musculus chromosome 7, clone RP24-200I20, complete sequence
          Length = 171061

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 527   ccaagataaatgacaccatcttt 549
             |||||||||||||||||||||||
Sbjct: 58657 ccaagataaatgacaccatcttt 58679

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>gb|AC108832.10| Mus musculus chromosome 7, clone RP23-242J3, complete sequence
          Length = 185083

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 527    ccaagataaatgacaccatcttt 549
              |||||||||||||||||||||||
Sbjct: 184194 ccaagataaatgacaccatcttt 184216

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>emb|AL929062.10| Mouse DNA sequence from clone RP23-342J9 on chromosome X, complete
              sequence
          Length = 212856

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 576    aaccatttaacagtgctctgat 597
              ||||||||||||||||||||||
Sbjct: 152596 aaccatttaacagtgctctgat 152617

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>gb|AC154675.2| Mus musculus BAC clone RP23-143J5 from chromosome 14, complete sequence
          Length = 207264

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 101    aactgtgtgccagctaccatg 121
              |||||||||||||||||||||
Sbjct: 192191 aactgtgtgccagctaccatg 192171

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>emb|AL162723.12| Human DNA sequence from clone RP13-428K23 on chromosome X, complete
              sequence
          Length = 192780

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 148    taaagatcagagagaaaaaat 168
              |||||||||||||||||||||
Sbjct: 160357 taaagatcagagagaaaaaat 160337

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>dbj|BS000589.1| Pan troglodytes chromosome Y clone:PTB-234J08, complete sequence
          Length = 179633

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 13     ttgtgtgacatatacatacaataaa 37
              ||||||||||||||| |||||||||
Sbjct: 100773 ttgtgtgacatatacttacaataaa 100749

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>dbj|BS000592.1| Pan troglodytes chromosome Y clone:PTB-024O19, complete sequence
          Length = 133142

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 13     ttgtgtgacatatacatacaataaa 37
              ||||||||||||||| |||||||||
Sbjct: 116684 ttgtgtgacatatacttacaataaa 116660

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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 13       ttgtgtgacatatacatacaataaa 37
                ||||||||||||||| |||||||||
Sbjct: 20487125 ttgtgtgacatatacttacaataaa 20487149

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>gb|AC011416.3| Homo sapiens chromosome 5 clone CTB-88F18, complete sequence
          Length = 142357

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 158    agagaaaaaatgaaactacaa 178
              |||||||||||||||||||||
Sbjct: 121597 agagaaaaaatgaaactacaa 121617

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>gb|AC154504.2| Mus musculus BAC clone RP24-92H14 from chromosome 14, complete sequence
          Length = 234665

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 101    aactgtgtgccagctaccatg 121
              |||||||||||||||||||||
Sbjct: 218159 aactgtgtgccagctaccatg 218179

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>gb|AC151722.2| Pan troglodytes BAC clone CH251-580N2 from chromosome y, complete
             sequence
          Length = 182549

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 13    ttgtgtgacatatacatacaataaa 37
             ||||||||||||||| |||||||||
Sbjct: 70033 ttgtgtgacatatacttacaataaa 70009

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>gb|AC005915.1|AC005915 Homo sapiens chromosome 5, Bac clone 58g14 (LBNL H76), complete sequence
          Length = 151026

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 158    agagaaaaaatgaaactacaa 178
              |||||||||||||||||||||
Sbjct: 116385 agagaaaaaatgaaactacaa 116365

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>emb|AL805930.16| Mouse DNA sequence from clone RP23-455B8 on chromosome 4, complete
              sequence
          Length = 174746

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 148    taaagatcagagagaaaaaat 168
              |||||||||||||||||||||
Sbjct: 146661 taaagatcagagagaaaaaat 146641

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>gb|AC161219.4| Mus musculus chromosome 7, clone RP23-83E16, complete sequence
          Length = 211735

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   tagcataagctccagttttc 144
             ||||||||||||||||||||
Sbjct: 34385 tagcataagctccagttttc 34366

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>gb|AC150310.1| Latimeria menadoensis clone VMRC4-40C18, complete sequence
          Length = 170774

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    acaataaagcatcctcaaat 49
             ||||||||||||||||||||
Sbjct: 51283 acaataaagcatcctcaaat 51264

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>gb|AC147091.2| Pan troglodytes BAC clone RP43-57O16 from 7, complete sequence
          Length = 170233

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 140    ttttcgcataaagatcagagagaaaaaa 167
              |||||| ||||| |||||||||||||||
Sbjct: 107076 ttttcggataaacatcagagagaaaaaa 107103

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>gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete sequence
          Length = 87839

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   atcagagagaaaaaatgaaa 172
             ||||||||||||||||||||
Sbjct: 57731 atcagagagaaaaaatgaaa 57712

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>emb|CT010495.9| Mouse DNA sequence from clone RP23-226G14 on chromosome 17, complete
             sequence
          Length = 202526

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 583   taacagtgctctgatagtat 602
             ||||||||||||||||||||
Sbjct: 97063 taacagtgctctgatagtat 97082

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>gb|AC145920.1| Pan troglodytes BAC clone RP43-10C15 from 7, complete sequence
          Length = 188373

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 140   ttttcgcataaagatcagagagaaaaaa 167
             |||||| ||||| |||||||||||||||
Sbjct: 27882 ttttcggataaacatcagagagaaaaaa 27855

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>emb|AL513191.4| Human DNA sequence from clone RP11-224F24 on chromosome 1 Contains the 5'
              end of a novel gene novel gene (FLJ34497), complete
              sequence
          Length = 153830

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 447    aaagaacctaaacaagcttc 466
              ||||||||||||||||||||
Sbjct: 140230 aaagaacctaaacaagcttc 140249

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>emb|AL157770.12| Human DNA sequence from clone RP11-490N5 on chromosome 13 Contains two
             novel genes, complete sequence
          Length = 61615

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   aagcagccacagttctttgg 381
             ||||||||||||||||||||
Sbjct: 49675 aagcagccacagttctttgg 49694

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>gb|AC092554.3| Papio anubis clone RP41-414G17, complete sequence
          Length = 167543

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 518   ttcttccatccaagataaat 537
             ||||||||||||||||||||
Sbjct: 23712 ttcttccatccaagataaat 23693

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>emb|AL034422.24|HS1141E15 Human DNA sequence from clone RP5-1141E15 on chromosome 20q11.23-12
             Contains the 5' end of GHRH gene for growth hormone
             releasing hormone, the MANBAL gene for mannosidase beta A
             lysosomal-like, the 5' end of the SRC gene for v-src avian
             sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog and a
             CpG island, complete sequence
          Length = 113681

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 468   tccatattcaagaatgtcac 487
             ||||||||||||||||||||
Sbjct: 83827 tccatattcaagaatgtcac 83808

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>emb|AL645522.12| Mouse DNA sequence from clone RP23-64E17 on chromosome 11 Cntains the 3'
              end of the Nipsnap1 gene for 4-nitrophenylphosphatase
              domain and non-neuronal SNAP25-like protein homolog 1 (C.
              elegans), a novel gene, a ribosomal protein L17 (Rpl17)
              pseudogene, the Nefh gene for neurofilament heavy
              polypeptide, the Ap1b1 gene for adaptor protein complex
              AP-1 beta 1 subunit, the gene for the ortholog of human
              RAS-related protein on chromosome 22, the gene for the
              ortholog of human growth arrest-specific 2 like 1 GAS2L1
              and six CpG islands, complete sequence
          Length = 183758

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 146    cataaagatcagagagaaaaaatg 169
              |||| |||||||||||||||||||
Sbjct: 107660 catacagatcagagagaaaaaatg 107637

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>gb|AC108217.3| Homo sapiens BAC clone RP11-681L8 from 4, complete sequence
          Length = 111201

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   tgtgcgcaggggagggttga 342
             ||||||||||||||||||||
Sbjct: 33655 tgtgcgcaggggagggttga 33636

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>gb|AC084200.22| Homo sapiens 12q BAC RP11-654D12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 191886

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   actgtgtgccagctaccatg 121
             ||||||||||||||||||||
Sbjct: 60935 actgtgtgccagctaccatg 60954

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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 148     taaagatcagagagaaaaaa 167
               ||||||||||||||||||||
Sbjct: 1342334 taaagatcagagagaaaaaa 1342353

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>gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chromosome unknown, complete
              sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    aagcagccacagttctttgg 381
              ||||||||||||||||||||
Sbjct: 150549 aagcagccacagttctttgg 150530

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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 470    catattcaagaatgtcaccgccat 493
              |||||||||||| |||||||||||
Sbjct: 729878 catattcaagaacgtcaccgccat 729855

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>gb|AC039057.8|AC039057 Homo sapiens chromosome 15 clone RP11-81G24 map 15q21.3, complete
             sequence
          Length = 174672

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tgtgacatatacatacaata 35
             ||||||||||||||||||||
Sbjct: 74281 tgtgacatatacatacaata 74300

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 28       atacaataaagcatcctcaa 47
                ||||||||||||||||||||
Sbjct: 22341737 atacaataaagcatcctcaa 22341756

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>emb|AJ507388.2|SMO507388 Soybean mosaic virus gene for polyprotein, genomic RNA, strain P
          Length = 9735

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 504 caaccagctttctgttcttccatc 527
           ||||||||||||||||||| ||||
Sbjct: 70  caaccagctttctgttctttcatc 93

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>gb|AC092574.2| Homo sapiens BAC clone RP11-2H3 from 4, complete sequence
          Length = 144117

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    tgtgacatatacatacaata 35
             ||||||||||||||||||||
Sbjct: 80022 tgtgacatatacatacaata 80041

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>gb|AC147317.3| Pan troglodytes BAC clone RP43-49P4 from chromosome 7, complete
             sequence
          Length = 196949

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    tgtgacatatacatacaata 35
             ||||||||||||||||||||
Sbjct: 86761 tgtgacatatacatacaata 86742

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>gb|AC099850.7| Homo sapiens chromosome 17, clone CTD-2510F5, complete sequence
          Length = 210344

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tgtgacatatacatacaata 35
              ||||||||||||||||||||
Sbjct: 178400 tgtgacatatacatacaata 178381

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>gb|AF272983.1|AF272983 Homo sapiens SRC tyrosine kinase gene, exons 1alpha and 1a,
            alternatively spliced
          Length = 4688

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 468  tccatattcaagaatgtcac 487
            ||||||||||||||||||||
Sbjct: 2606 tccatattcaagaatgtcac 2587

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>gb|AC007285.3|AC007285 Homo sapiens BAC clone RP11-576P10 from 7p11.2-p21, complete sequence
          Length = 140619

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 518   ttcttccatccaagataaat 537
             ||||||||||||||||||||
Sbjct: 56485 ttcttccatccaagataaat 56466

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>gb|AC150469.3| Atelerix albiventris clone LB4-498C22, complete sequence
          Length = 56862

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   taaagatcagagagaaaaaa 167
             ||||||||||||||||||||
Sbjct: 29909 taaagatcagagagaaaaaa 29928

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>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1144B06
          Length = 133689

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    atacaataaagcatcctcaa 47
             ||||||||||||||||||||
Sbjct: 38720 atacaataaagcatcctcaa 38739

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>gb|AC114632.9| Mus musculus chromosome 5, clone RP24-114E20, complete sequence
          Length = 160308

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 506   accagctttctgttcttcca 525
             ||||||||||||||||||||
Sbjct: 98590 accagctttctgttcttcca 98609

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>gb|AC154423.2| Mus musculus BAC clone RP24-221B7 from 17, complete sequence
          Length = 172011

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 583    taacagtgctctgatagtat 602
              ||||||||||||||||||||
Sbjct: 129801 taacagtgctctgatagtat 129782

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>gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, complete sequence
          Length = 153206

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 125  tagcataagctccagttttc 144
            ||||||||||||||||||||
Sbjct: 1343 tagcataagctccagttttc 1362

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>emb|Z79756.1|CEF53C11 Caenorhabditis elegans Cosmid F53C11, complete sequence
          Length = 34796

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 158   agagaaaaaatgaaactacaagga 181
             ||||||||||||||| ||||||||
Sbjct: 33824 agagaaaaaatgaaattacaagga 33847

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>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome
          Length = 1799146

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    gagaaaaaatgaaactacaa 178
              ||||||||||||||||||||
Sbjct: 986122 gagaaaaaatgaaactacaa 986141

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>emb|AL359237.4|CNS05TEO Human chromosome 14 DNA sequence BAC R-1152H15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162119

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   gtagcagcagcatggtttgtacct 266
             ||||||| ||||||||||||||||
Sbjct: 11822 gtagcaggagcatggtttgtacct 11845

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>emb|AL158059.3|CNS01RGK Human chromosome 14 DNA sequence BAC C-2007A10 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 148515

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 243   gtagcagcagcatggtttgtacct 266
             ||||||| ||||||||||||||||
Sbjct: 35433 gtagcaggagcatggtttgtacct 35410


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,340,223
Number of Sequences: 3902068
Number of extensions: 6340223
Number of successful extensions: 115020
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114629
Number of HSP's gapped (non-prelim): 385
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result