ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19j19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 248 2e-62
2gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare str... 248 2e-62
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 248 2e-62
4gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome... 248 2e-62
5dbj|AK121020.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 2e-62
6gb|AY224468.1| Oryza sativa (japonica cultivar-group) isolate 24... 228 1e-56
7gb|AY823551.1| Pennisetum glaucum voltage dependent anion channe... 210 3e-51
8gb|AY823552.1| Pennisetum glaucum voltage dependent anion channe... 208 1e-50
9gb|AF513381.1| Pennisetum glaucum PgPOR29 (PORIN) mRNA, complete... 202 8e-49
10gb|AY105200.1| Zea mays PCO141157 mRNA sequence 184 2e-43
11gb|AC159257.2| Mus musculus BAC clone RP24-86H20 from chromosome... 42 1.8
12gb|BC040828.1| Mus musculus cDNA sequence BC037034, mRNA (cDNA c... 42 1.8
13gb|BC044860.1| Mus musculus cDNA sequence BC037034, mRNA (cDNA c... 42 1.8
14gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome ... 42 1.8
15dbj|AK046882.1| Mus musculus 10 days neonate medulla oblongata c... 42 1.8
16gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 7.2
17gb|AC149071.3| Xenopus tropicalis BAC clone ISB10250N9 containin... 40 7.2
18gb|AC140336.2| Mus musculus BAC clone RP24-266F17 from chromosom... 40 7.2
19gb|AC144794.2| Mus musculus BAC clone RP24-463B6 from chromosome... 40 7.2
20gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome... 40 7.2
21ref|XM_387571.1| Gibberella zeae PH-1 chromosome 4 hypothetical ... 40 7.2
22ref|XM_383886.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 7.2
23gb|AC124444.4| Mus musculus BAC clone RP24-185P7 from chromosome... 40 7.2
24gb|AC107024.5| Homo sapiens 3 BAC RP11-447J13 (Roswell Park Canc... 40 7.2
25gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete... 40 7.2
26gb|AY337211.1| Uncultured sulfate-reducing bacterium clone W3071... 40 7.2
27gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, com... 40 7.2
28gb|AC163105.5| Mus musculus BAC clone RP23-259A11 from chromosom... 40 7.2
29gb|AC154379.2| Mus musculus BAC clone RP23-52B1 from chromosome ... 40 7.2
30emb|BX004823.23| Zebrafish DNA sequence from clone DKEY-13A3 in ... 40 7.2
31ref|NG_005518.1| Homo sapiens zinc finger protein 705C pseudogen... 40 7.2
32dbj|AK137841.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 7.2
33gb|AC154636.2| Mus musculus BAC clone RP23-302E1 from chromosome... 40 7.2
34gb|AC087203.12| Homo sapiens chromosome 8, clone RP11-351I21, co... 40 7.2
35gb|AC018554.7| Homo sapiens chromosome 16 clone RP11-457D20, com... 40 7.2
36gb|AC134575.3| Mus musculus BAC clone RP24-67I21 from chromosome... 40 7.2
37emb|CR318631.5| Zebrafish DNA sequence from clone DKEY-207D5 in ... 40 7.2
38emb|BX649507.3| Zebrafish DNA sequence from clone CH211-154H20 i... 40 7.2
39emb|BX000347.7| Zebrafish DNA sequence from clone DKEY-66C4 in l... 40 7.2
40dbj|AP000852.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.2
41gb|AC005670.1|AC005670 Homo sapiens chromosome 17, clone hRPK.63... 40 7.2
42emb|CT572990.6| Mouse DNA sequence from clone RP24-393N9 on chro... 40 7.2
43gb|AC156797.2| Mus musculus BAC clone RP24-88A16 from chromosome... 40 7.2
44emb|CT025562.10| Mouse DNA sequence from clone RP24-225O12 on ch... 40 7.2 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  248 bits (125), Expect = 2e-62
 Identities = 275/324 (84%), Gaps = 2/324 (0%)
 Strand = Plus / Plus

                                                                           
Query: 208     aacatgtctgcggaacaaattattggccatagcttcacaaaaaataaccaaagaatccga 267
               |||| ||||||||||||||||||||||||| ||||  ||||| |  |||||||||| |||
Sbjct: 5316807 aacaggtctgcggaacaaattattggccattgctttgcaaaaca--accaaagaattcga 5316864

                                                                           
Query: 268     tgttcaaccaccatcatccacgtatgatctcatcagggcttgagcacaagtgacagccca 327
                 || |||  |||||| ||||  | ||| | |||||||| ||||  |||| |  || |||
Sbjct: 5316865 aatttaacagccatcaaccacagacgatgttatcagggcctgagtgcaagcgctagacca 5316924

                                                                           
Query: 328     aacttgggtgctctgtccaaggccttggtgtcgaattcaccggatatcgtcaagagtgac 387
               |||||||| | |||||||||||||||||||||||||||||| || || ||||| |  |||
Sbjct: 5316925 aacttggggggtctgtccaaggccttggtgtcgaattcaccagagattgtcaaaaccgac 5316984

                                                                           
Query: 388     tttggtttaacctcgtgctggagaagggcagcaagctttccagtgttgttgagccttgcc 447
               || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5316985 ttgggtttaacctcatgctggagaagagcagcaagctttccagtgttgttgagccttgcc 5317044

                                                                           
Query: 448     ttcacagctgtctgagggtcgacagtgtacaggccaccaactgtcagtgtgttctcgttt 507
               |||||||||||||  ||||| ||  |||||||||||||||| || || |||||||| |||
Sbjct: 5317045 ttcacagctgtctcggggtcaaccttgtacaggccaccaacagtgagagtgttctcattt 5317104

                                       
Query: 508     gttgagagcttccgggtaaattca 531
               ||||||||| | ||||| ||||||
Sbjct: 5317105 gttgagagcctgcgggttaattca 5317128
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>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009J13, from chromosome 3, complete sequence
          Length = 147205

 Score =  248 bits (125), Expect = 2e-62
 Identities = 275/324 (84%), Gaps = 2/324 (0%)
 Strand = Plus / Plus

                                                                         
Query: 208   aacatgtctgcggaacaaattattggccatagcttcacaaaaaataaccaaagaatccga 267
             |||| ||||||||||||||||||||||||| ||||  ||||| |  |||||||||| |||
Sbjct: 22975 aacaggtctgcggaacaaattattggccattgctttgcaaaaca--accaaagaattcga 23032

                                                                         
Query: 268   tgttcaaccaccatcatccacgtatgatctcatcagggcttgagcacaagtgacagccca 327
               || |||  |||||| ||||  | ||| | |||||||| ||||  |||| |  || |||
Sbjct: 23033 aatttaacagccatcaaccacagacgatgttatcagggcctgagtgcaagcgctagacca 23092

                                                                         
Query: 328   aacttgggtgctctgtccaaggccttggtgtcgaattcaccggatatcgtcaagagtgac 387
             |||||||| | |||||||||||||||||||||||||||||| || || ||||| |  |||
Sbjct: 23093 aacttggggggtctgtccaaggccttggtgtcgaattcaccagagattgtcaaaaccgac 23152

                                                                         
Query: 388   tttggtttaacctcgtgctggagaagggcagcaagctttccagtgttgttgagccttgcc 447
             || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 23153 ttgggtttaacctcatgctggagaagagcagcaagctttccagtgttgttgagccttgcc 23212

                                                                         
Query: 448   ttcacagctgtctgagggtcgacagtgtacaggccaccaactgtcagtgtgttctcgttt 507
             |||||||||||||  ||||| ||  |||||||||||||||| || || |||||||| |||
Sbjct: 23213 ttcacagctgtctcggggtcaaccttgtacaggccaccaacagtgagagtgttctcattt 23272

                                     
Query: 508   gttgagagcttccgggtaaattca 531
             ||||||||| | ||||| ||||||
Sbjct: 23273 gttgagagcctgcgggttaattca 23296
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  248 bits (125), Expect = 2e-62
 Identities = 275/324 (84%), Gaps = 2/324 (0%)
 Strand = Plus / Plus

                                                                           
Query: 208     aacatgtctgcggaacaaattattggccatagcttcacaaaaaataaccaaagaatccga 267
               |||| ||||||||||||||||||||||||| ||||  ||||| |  |||||||||| |||
Sbjct: 5316022 aacaggtctgcggaacaaattattggccattgctttgcaaaaca--accaaagaattcga 5316079

                                                                           
Query: 268     tgttcaaccaccatcatccacgtatgatctcatcagggcttgagcacaagtgacagccca 327
                 || |||  |||||| ||||  | ||| | |||||||| ||||  |||| |  || |||
Sbjct: 5316080 aatttaacagccatcaaccacagacgatgttatcagggcctgagtgcaagcgctagacca 5316139

                                                                           
Query: 328     aacttgggtgctctgtccaaggccttggtgtcgaattcaccggatatcgtcaagagtgac 387
               |||||||| | |||||||||||||||||||||||||||||| || || ||||| |  |||
Sbjct: 5316140 aacttggggggtctgtccaaggccttggtgtcgaattcaccagagattgtcaaaaccgac 5316199

                                                                           
Query: 388     tttggtttaacctcgtgctggagaagggcagcaagctttccagtgttgttgagccttgcc 447
               || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5316200 ttgggtttaacctcatgctggagaagagcagcaagctttccagtgttgttgagccttgcc 5316259

                                                                           
Query: 448     ttcacagctgtctgagggtcgacagtgtacaggccaccaactgtcagtgtgttctcgttt 507
               |||||||||||||  ||||| ||  |||||||||||||||| || || |||||||| |||
Sbjct: 5316260 ttcacagctgtctcggggtcaaccttgtacaggccaccaacagtgagagtgttctcattt 5316319

                                       
Query: 508     gttgagagcttccgggtaaattca 531
               ||||||||| | ||||| ||||||
Sbjct: 5316320 gttgagagcctgcgggttaattca 5316343
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>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0006P09, complete sequence
          Length = 153950

 Score =  248 bits (125), Expect = 2e-62
 Identities = 275/324 (84%), Gaps = 2/324 (0%)
 Strand = Plus / Plus

                                                                         
Query: 208   aacatgtctgcggaacaaattattggccatagcttcacaaaaaataaccaaagaatccga 267
             |||| ||||||||||||||||||||||||| ||||  ||||| |  |||||||||| |||
Sbjct: 37956 aacaggtctgcggaacaaattattggccattgctttgcaaaaca--accaaagaattcga 38013

                                                                         
Query: 268   tgttcaaccaccatcatccacgtatgatctcatcagggcttgagcacaagtgacagccca 327
               || |||  |||||| ||||  | ||| | |||||||| ||||  |||| |  || |||
Sbjct: 38014 aatttaacagccatcaaccacagacgatgttatcagggcctgagtgcaagcgctagacca 38073

                                                                         
Query: 328   aacttgggtgctctgtccaaggccttggtgtcgaattcaccggatatcgtcaagagtgac 387
             |||||||| | |||||||||||||||||||||||||||||| || || ||||| |  |||
Sbjct: 38074 aacttggggggtctgtccaaggccttggtgtcgaattcaccagagattgtcaaaaccgac 38133

                                                                         
Query: 388   tttggtttaacctcgtgctggagaagggcagcaagctttccagtgttgttgagccttgcc 447
             || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 38134 ttgggtttaacctcatgctggagaagagcagcaagctttccagtgttgttgagccttgcc 38193

                                                                         
Query: 448   ttcacagctgtctgagggtcgacagtgtacaggccaccaactgtcagtgtgttctcgttt 507
             |||||||||||||  ||||| ||  |||||||||||||||| || || |||||||| |||
Sbjct: 38194 ttcacagctgtctcggggtcaaccttgtacaggccaccaacagtgagagtgttctcattt 38253

                                     
Query: 508   gttgagagcttccgggtaaattca 531
             ||||||||| | ||||| ||||||
Sbjct: 38254 gttgagagcctgcgggttaattca 38277
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>dbj|AK121020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049E21, full
            insert sequence
          Length = 1265

 Score =  248 bits (125), Expect = 2e-62
 Identities = 275/324 (84%), Gaps = 2/324 (0%)
 Strand = Plus / Minus

                                                                        
Query: 208  aacatgtctgcggaacaaattattggccatagcttcacaaaaaataaccaaagaatccga 267
            |||| ||||||||||||||||||||||||| ||||  ||||| |  |||||||||| |||
Sbjct: 1052 aacaggtctgcggaacaaattattggccattgctttgcaaaaca--accaaagaattcga 995

                                                                        
Query: 268  tgttcaaccaccatcatccacgtatgatctcatcagggcttgagcacaagtgacagccca 327
              || |||  |||||| ||||  | ||| | |||||||| ||||  |||| |  || |||
Sbjct: 994  aatttaacagccatcaaccacagacgatgttatcagggcctgagtgcaagcgctagacca 935

                                                                        
Query: 328  aacttgggtgctctgtccaaggccttggtgtcgaattcaccggatatcgtcaagagtgac 387
            |||||||| | |||||||||||||||||||||||||||||| || || ||||| |  |||
Sbjct: 934  aacttggggggtctgtccaaggccttggtgtcgaattcaccagagattgtcaaaaccgac 875

                                                                        
Query: 388  tttggtttaacctcgtgctggagaagggcagcaagctttccagtgttgttgagccttgcc 447
            || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 874  ttgggtttaacctcatgctggagaagagcagcaagctttccagtgttgttgagccttgcc 815

                                                                        
Query: 448  ttcacagctgtctgagggtcgacagtgtacaggccaccaactgtcagtgtgttctcgttt 507
            |||||||||||||  ||||| ||  |||||||||||||||| || || |||||||| |||
Sbjct: 814  ttcacagctgtctcggggtcaaccttgtacaggccaccaacagtgagagtgttctcattt 755

                                    
Query: 508  gttgagagcttccgggtaaattca 531
            ||||||||| | ||||| ||||||
Sbjct: 754  gttgagagcctgcgggttaattca 731
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>gb|AY224468.1| Oryza sativa (japonica cultivar-group) isolate 24162 porin-like
           protein mRNA, complete cds
          Length = 834

 Score =  228 bits (115), Expect = 1e-56
 Identities = 184/207 (88%)
 Strand = Plus / Minus

                                                                       
Query: 325 ccaaacttgggtgctctgtccaaggccttggtgtcgaattcaccggatatcgtcaagagt 384
           ||||||||||| | |||||||||||||||||||||||||||||| || || ||||| |  
Sbjct: 809 ccaaacttggggggtctgtccaaggccttggtgtcgaattcaccagagattgtcaaaacc 750

                                                                       
Query: 385 gactttggtttaacctcgtgctggagaagggcagcaagctttccagtgttgttgagcctt 444
           ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 749 gacttgggtttaacctcatgctggagaagagcagcaagctttccagtgttgttgagcctt 690

                                                                       
Query: 445 gccttcacagctgtctgagggtcgacagtgtacaggccaccaactgtcagtgtgttctcg 504
           ||||||||||||||||  ||||| ||  |||||||||||||||| || || |||||||| 
Sbjct: 689 gccttcacagctgtctcggggtcaaccttgtacaggccaccaacagtgagagtgttctca 630

                                      
Query: 505 tttgttgagagcttccgggtaaattca 531
           |||||||||||| | ||||| ||||||
Sbjct: 629 tttgttgagagcctgcgggttaattca 603
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>gb|AY823551.1| Pennisetum glaucum voltage dependent anion channel protein mRNA,
           complete cds
          Length = 1025

 Score =  210 bits (106), Expect = 3e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                       
Query: 291 atgatctcatcagggcttgagcacaagtgacagcccaaacttgggtgctctgtccaaggc 350
           |||||||  ||||||||| ||| | |||| ||| ||||||||||| || ||||||| |||
Sbjct: 843 atgatctggtcagggcttcagcgcgagtgccaggccaaacttgggggccctgtccagggc 784

                                                                       
Query: 351 cttggtgtcgaattcaccggatatcgtcaagagtgactttggtttaacctcgtgctggag 410
           |||||||||||| ||||| || || |||||||| ||||| ||||||| ||||||||| ||
Sbjct: 783 cttggtgtcgaactcacccgagattgtcaagagcgacttgggtttaagctcgtgctgaag 724

                                                                       
Query: 411 aagggcagcaagctttccagtgttgttgagccttgccttcacagctgtctgagggtcgac 470
           |||||| |||||| ||||||||||||||||||| |||||||| ||||||||||| |||| 
Sbjct: 723 aagggcggcaagcgttccagtgttgttgagcctcgccttcacggctgtctgaggatcgat 664

                                                                 
Query: 471 agtgtacaggccaccaactgtcagtgtgttctcgtttgttgagagcttccgggt 524
             |||| ||||||||||| || ||||||||| | |||||||||||| |||||||
Sbjct: 663 cttgtagaggccaccaacagtgagtgtgttcacatttgttgagagcctccgggt 610
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>gb|AY823552.1| Pennisetum glaucum voltage dependent anion channel protein gene,
            complete cds
          Length = 2967

 Score =  208 bits (105), Expect = 1e-50
 Identities = 195/225 (86%)
 Strand = Plus / Minus

                                                                        
Query: 300  tcagggcttgagcacaagtgacagcccaaacttgggtgctctgtccaaggccttggtgtc 359
            ||||||||| ||| | |||| ||| ||||||||||| || ||||||| ||||||||||||
Sbjct: 2967 tcagggcttcagcgcgagtgccaggccaaacttgggggccctgtccagggccttggtgtc 2908

                                                                        
Query: 360  gaattcaccggatatcgtcaagagtgactttggtttaacctcgtgctggagaagggcagc 419
            ||| ||||| || || |||||||| ||||| ||||||| ||||||||| |||||||| ||
Sbjct: 2907 gaactcacccgagattgtcaagagcgacttgggtttaagctcgtgctgaagaagggcggc 2848

                                                                        
Query: 420  aagctttccagtgttgttgagccttgccttcacagctgtctgagggtcgacagtgtacag 479
            |||| ||||||||||||||||||| |||||||| ||||||||||| ||||   |||| ||
Sbjct: 2847 aagcgttccagtgttgttgagcctcgccttcacggctgtctgaggatcgatcttgtagag 2788

                                                         
Query: 480  gccaccaactgtcagtgtgttctcgtttgttgagagcttccgggt 524
            ||||||||| || ||||||||| | |||||||||||| |||||||
Sbjct: 2787 gccaccaacagtgagtgtgttcacatttgttgagagcctccgggt 2743
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>gb|AF513381.1| Pennisetum glaucum PgPOR29 (PORIN) mRNA, complete cds; nuclear gene
           for mitochondrial product
          Length = 831

 Score =  202 bits (102), Expect = 8e-49
 Identities = 192/222 (86%)
 Strand = Plus / Minus

                                                                       
Query: 303 gggcttgagcacaagtgacagcccaaacttgggtgctctgtccaaggccttggtgtcgaa 362
           |||||| ||| | |||| ||| ||||||||||| || ||||||| |||||||||||||||
Sbjct: 831 gggcttcagcgcgagtgccaggccaaacttgggggccctgtccagggccttggtgtcgaa 772

                                                                       
Query: 363 ttcaccggatatcgtcaagagtgactttggtttaacctcgtgctggagaagggcagcaag 422
            ||||| || || |||||||| ||||| ||||||| ||||||||| |||||||| |||||
Sbjct: 771 ctcacccgagattgtcaagagcgacttgggtttaagctcgtgctgaagaagggcggcaag 712

                                                                       
Query: 423 ctttccagtgttgttgagccttgccttcacagctgtctgagggtcgacagtgtacaggcc 482
           | ||||||||||||||||||| |||||||| ||||||||||| ||||   |||| |||||
Sbjct: 711 cgttccagtgttgttgagcctcgccttcacggctgtctgaggatcgatcttgtagaggcc 652

                                                     
Query: 483 accaactgtcagtgtgttctcgtttgttgagagcttccgggt 524
           |||||| || ||||||||| | |||||||||||| |||||||
Sbjct: 651 accaacagtgagtgtgttcacatttgttgagagcctccgggt 610
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>gb|AY105200.1| Zea mays PCO141157 mRNA sequence
          Length = 1411

 Score =  184 bits (93), Expect = 2e-43
 Identities = 198/233 (84%)
 Strand = Plus / Minus

                                                                        
Query: 292  tgatctcatcagggcttgagcacaagtgacagcccaaacttgggtgctctgtccaaggcc 351
            |||||| |||||||||| ||  |||| | ||  |||||||| || | |||||||| ||||
Sbjct: 1083 tgatctgatcagggcttcagtgcaagcgccaagccaaactttggggatctgtccagggcc 1024

                                                                        
Query: 352  ttggtgtcgaattcaccggatatcgtcaagagtgactttggtttaacctcgtgctggaga 411
            || |||||||||||||| || || |||||||| ||||| ||||||| ||||||||| |||
Sbjct: 1023 tttgtgtcgaattcaccagagattgtcaagagcgacttgggtttaagctcgtgctgaaga 964

                                                                        
Query: 412  agggcagcaagctttccagtgttgttgagccttgccttcacagctgtctgagggtcgaca 471
            || || |||||| |||||||||| ||||| |||||||||||||||||||| || || || 
Sbjct: 963  agcgcggcaagcgttccagtgttattgagtcttgccttcacagctgtctggggatcaact 904

                                                                 
Query: 472  gtgtacaggccaccaactgtcagtgtgttctcgtttgttgagagcttccgggt 524
            |||||||| ||||| ||||| ||||||||||  |||||||||||| |||||||
Sbjct: 903  gtgtacagtccaccgactgtgagtgtgttctgatttgttgagagcctccgggt 851
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>gb|AC159257.2| Mus musculus BAC clone RP24-86H20 from chromosome 5, complete sequence
          Length = 202099

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 417    agcaagctttccagtgttgttgagc 441
              ||||||||||||||||||| |||||
Sbjct: 167618 agcaagctttccagtgttgatgagc 167594
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>gb|BC040828.1| Mus musculus cDNA sequence BC037034, mRNA (cDNA clone IMAGE:4949039),
            with apparent retained intron
          Length = 2677

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 417  agcaagctttccagtgttgttgagc 441
            ||||||||||||||||||| |||||
Sbjct: 1145 agcaagctttccagtgttgatgagc 1169
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>gb|BC044860.1| Mus musculus cDNA sequence BC037034, mRNA (cDNA clone IMAGE:4949039),
            partial cds
          Length = 2641

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 417  agcaagctttccagtgttgttgagc 441
            ||||||||||||||||||| |||||
Sbjct: 1157 agcaagctttccagtgttgatgagc 1181
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>gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome 5, complete sequence
          Length = 220137

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 417    agcaagctttccagtgttgttgagc 441
              ||||||||||||||||||| |||||
Sbjct: 134525 agcaagctttccagtgttgatgagc 134549
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>dbj|AK046882.1| Mus musculus 10 days neonate medulla oblongata cDNA, RIKEN
            full-length enriched library, clone:B830048G18
            product:OVARC1000461 PROTEIN homolog [Homo sapiens], full
            insert sequence
          Length = 3566

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 417  agcaagctttccagtgttgttgagc 441
            ||||||||||||||||||| |||||
Sbjct: 2441 agcaagctttccagtgttgatgagc 2465
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 157     ggcctatcggatcctgccca 176
               ||||||||||||||||||||
Sbjct: 2184527 ggcctatcggatcctgccca 2184546
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>gb|AC149071.3| Xenopus tropicalis BAC clone ISB10250N9 containing the Irx4 gene,
            complete cds, complete sequence
          Length = 84437

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 235  catagcttcacaaaaaataa 254
            ||||||||||||||||||||
Sbjct: 7132 catagcttcacaaaaaataa 7151
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>gb|AC140336.2| Mus musculus BAC clone RP24-266F17 from chromosome 18, complete
             sequence
          Length = 186205

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    ctactcggaactcacagtagaaag 91
             |||||| |||||||||||||||||
Sbjct: 53712 ctactctgaactcacagtagaaag 53689
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>gb|AC144794.2| Mus musculus BAC clone RP24-463B6 from chromosome 18, complete sequence
          Length = 152588

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   tggataaaatcccaggtgaa 156
             ||||||||||||||||||||
Sbjct: 13293 tggataaaatcccaggtgaa 13274
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>gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome 18, complete sequence
          Length = 181095

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   tggataaaatcccaggtgaa 156
             ||||||||||||||||||||
Sbjct: 38654 tggataaaatcccaggtgaa 38673
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>ref|XM_387571.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07395.1)
            partial mRNA
          Length = 1422

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  cggatatcgtcaagagtgac 387
            ||||||||||||||||||||
Sbjct: 1019 cggatatcgtcaagagtgac 1000
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>ref|XM_383886.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03710.1)
            partial mRNA
          Length = 1353

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  attattggccatagcttcac 245
            ||||||||||||||||||||
Sbjct: 1272 attattggccatagcttcac 1253
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>gb|AC124444.4| Mus musculus BAC clone RP24-185P7 from chromosome 7, complete sequence
          Length = 184996

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 337    gctctgtccaaggccttggt 356
              ||||||||||||||||||||
Sbjct: 140676 gctctgtccaaggccttggt 140695
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>gb|AC107024.5| Homo sapiens 3 BAC RP11-447J13 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 180216

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 223  caaattattggccatagctt 242
            ||||||||||||||||||||
Sbjct: 6786 caaattattggccatagctt 6805
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>gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete sequence
          Length = 255062

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    gctctgtccaaggccttggt 356
              ||||||||||||||||||||
Sbjct: 212000 gctctgtccaaggccttggt 211981
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>gb|AY337211.1| Uncultured sulfate-reducing bacterium clone W307173 dissimilatory
            sulfite reductase subunits alpha and beta (dsrAB) gene,
            partial sequence
          Length = 1373

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 373  atcgtcaagagtgactttgg 392
            ||||||||||||||||||||
Sbjct: 1320 atcgtcaagagtgactttgg 1301
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>gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, complete sequence
          Length = 213683

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 68     ctactcggaactcacagtagaaag 91
              |||||| |||||||||||||||||
Sbjct: 146091 ctactctgaactcacagtagaaag 146068
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>gb|AC163105.5| Mus musculus BAC clone RP23-259A11 from chromosome 14, complete sequence
          Length = 227806

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 376    gtcaagagtgactttggttt 395
              ||||||||||||||||||||
Sbjct: 193928 gtcaagagtgactttggttt 193909
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>gb|AC154379.2| Mus musculus BAC clone RP23-52B1 from chromosome 17, complete sequence
          Length = 234939

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     gaaaaataaatgtagcttct 43
              ||||||||||||||||||||
Sbjct: 173815 gaaaaataaatgtagcttct 173796
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>emb|BX004823.23| Zebrafish DNA sequence from clone DKEY-13A3 in linkage group 14, complete
              sequence
          Length = 197683

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    caaacttgggtgctctgtcc 345
              ||||||||||||||||||||
Sbjct: 127167 caaacttgggtgctctgtcc 127148
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>ref|NG_005518.1| Homo sapiens zinc finger protein 705C pseudogene (ZNF705CP) on
             chromosome 8
          Length = 26370

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    aactcacagtagaaagaaac 95
             ||||||||||||||||||||
Sbjct: 23417 aactcacagtagaaagaaac 23436
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>dbj|AK137841.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A130024G16 product:demethyl-Q 7, full
            insert sequence
          Length = 3071

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  gctctgtccaaggccttggt 356
            ||||||||||||||||||||
Sbjct: 1265 gctctgtccaaggccttggt 1284
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>gb|AC154636.2| Mus musculus BAC clone RP23-302E1 from chromosome 12, complete sequence
          Length = 179631

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 474   gtacaggccaccaactgtca 493
             ||||||||||||||||||||
Sbjct: 58943 gtacaggccaccaactgtca 58962
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>gb|AC087203.12| Homo sapiens chromosome 8, clone RP11-351I21, complete sequence
          Length = 117500

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    aactcacagtagaaagaaac 95
             ||||||||||||||||||||
Sbjct: 27423 aactcacagtagaaagaaac 27442
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>gb|AC018554.7| Homo sapiens chromosome 16 clone RP11-457D20, complete sequence
          Length = 216977

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   atttaacagaacatgtctgc 218
             ||||||||||||||||||||
Sbjct: 73587 atttaacagaacatgtctgc 73568
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>gb|AC134575.3| Mus musculus BAC clone RP24-67I21 from chromosome 14, complete sequence
          Length = 172103

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    aagctttccagtgttgttga 439
              ||||||||||||||||||||
Sbjct: 164043 aagctttccagtgttgttga 164024
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>emb|CR318631.5| Zebrafish DNA sequence from clone DKEY-207D5 in linkage group 18,
             complete sequence
          Length = 189711

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    aactcacagtagaaagaaacaagc 99
             ||||||||||||||| ||||||||
Sbjct: 55629 aactcacagtagaaaaaaacaagc 55606
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>emb|BX649507.3| Zebrafish DNA sequence from clone CH211-154H20 in linkage group 18,
             complete sequence
          Length = 166185

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    aactcacagtagaaagaaacaagc 99
             ||||||||||||||| ||||||||
Sbjct: 97948 aactcacagtagaaaaaaacaagc 97971
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>emb|BX000347.7| Zebrafish DNA sequence from clone DKEY-66C4 in linkage group 18, complete
              sequence
          Length = 155713

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 76     aactcacagtagaaagaaacaagc 99
              ||||||||||||||| ||||||||
Sbjct: 109376 aactcacagtagaaaaaaacaagc 109399
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>dbj|AP000852.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-851M3, complete
             sequence
          Length = 166277

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    atgaaaaataaatgtagctt 41
             ||||||||||||||||||||
Sbjct: 80050 atgaaaaataaatgtagctt 80069
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>gb|AC005670.1|AC005670 Homo sapiens chromosome 17, clone hRPK.63_A_1, complete sequence
          Length = 147902

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   atagcttcacaaaaaataac 255
             ||||||||||||||||||||
Sbjct: 58090 atagcttcacaaaaaataac 58071
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>emb|CT572990.6| Mouse DNA sequence from clone RP24-393N9 on chromosome 12, complete
             sequence
          Length = 90243

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 474   gtacaggccaccaactgtca 493
             ||||||||||||||||||||
Sbjct: 29306 gtacaggccaccaactgtca 29287
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>gb|AC156797.2| Mus musculus BAC clone RP24-88A16 from chromosome 14, complete sequence
          Length = 166341

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 376    gtcaagagtgactttggttt 395
              ||||||||||||||||||||
Sbjct: 152100 gtcaagagtgactttggttt 152119
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>emb|CT025562.10| Mouse DNA sequence from clone RP24-225O12 on chromosome 14, complete
              sequence
          Length = 194430

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 420    aagctttccagtgttgttga 439
              ||||||||||||||||||||
Sbjct: 131103 aagctttccagtgttgttga 131122


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,922,136
Number of Sequences: 3902068
Number of extensions: 4922136
Number of successful extensions: 94658
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94517
Number of HSP's gapped (non-prelim): 141
length of query: 531
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 508
effective length of database: 17,143,297,704
effective search space: 8708795233632
effective search space used: 8708795233632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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