Clone Name | rbasd19j06 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ298132.1|HVU298132 Hordeum vulgare mRNA for polyamine oxidase (bpao2 gene) Length = 1700 Score = 829 bits (418), Expect = 0.0 Identities = 427/430 (99%) Strand = Plus / Minus Query: 162 aaaagcttccacgttaactgtggcacgcgtctgagtttattccatgacgatgcatgcgag 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1700 aaaagcttccacgttaactgtggcacgcgtctgagtttattccatgacgatgcatgcgag 1641 Query: 222 cagactggcatggcatctcaacttcctccttcatttagcctcagctttcagctcgtcgtc 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1640 cagactggcatggcatctcaacttcctccttcatttagcctcagctttcagctcgtcgtc 1581 Query: 282 atacttgggacggactttaaagtcgacgttgttgagggccttgttcatcagaatgtccgc 341 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1580 atacttgggacggactttaaagtcgacgttgttggaggccttgttcatcagaatgtccgc 1521 Query: 342 ggagtgtatacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtg 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1520 ggagtgtatacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtg 1461 Query: 402 ctccccggtgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcg 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1460 ctccccggtgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcg 1401 Query: 462 gttgacgccgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcg 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1400 gttgacgccgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcg 1341 Query: 522 cggcacgtagatatcggtggcgtcggggacgtcccggtcggggaacatgttgcgcagcac 581 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1340 cagcacgtagatatcggtggcgtcggggacgtcccggtcggggaacatgttgcgcagcac 1281 Query: 582 gcccacggcc 591 |||||||||| Sbjct: 1280 gcccacggcc 1271
>emb|AJ234402.1|HVU234402 Hordeum vulgare partial mRNA; clone cMWG0647 Length = 252 Score = 400 bits (202), Expect = e-108 Identities = 242/250 (96%), Gaps = 6/250 (2%) Strand = Plus / Minus Query: 4 aggcctcgacggcca-gtgtttttattcgatnaa-ttacaagaaattacatcactggaac 61 ||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 252 aggcctcgacggccaagtgtttttattcgatcaaattacaagaaattacatcactggaac 193 Query: 62 gcttcaacaggaaccacatactctcggagaatccaaacacgggaggcacgaaagaaagct 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 gcttcaacaggaaccacatactctcggagaatccaaacacgggaggcacgaaagaaagct 133 Query: 122 ggaacgtcacattatttcgcctcacatcaaattcttggggaaaagcttccacgttaa-ct 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 132 ggaacgtcacattatttcgcctcacatcaaattcttggggaaaagcttccacgttaacct 73 Query: 181 g--tggcacgcgtctgagtttatt-ccatgacgatgcatgcgagcagactggcatggcat 237 | |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 72 gcttggcacgcvtctgagtttattcccatgacgatgcatgcgagcagactggcatggcat 13 Query: 238 ctcaacttcc 247 |||||||||| Sbjct: 12 ctcaacttcc 3
>emb|AJ304793.1|HVU304793 Hordeum vulgare bpao2 gene for flavin containing polyamine oxidase, exons 1-8 Length = 4217 Score = 339 bits (171), Expect = 6e-90 Identities = 177/179 (98%) Strand = Plus / Minus Query: 260 cctcagctttcagctcgtcgtcatacttgggacggactttaaagtcgacgttgttgaggg 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3994 cctcagctttcagctcgtcgtcatacttgggacggactttaaagtcgacgttgttggagg 3935 Query: 320 ccttgttcatcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagc 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3934 ccttgttcatcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagc 3875 Query: 380 cattgtagtgctcgctggtgtgctccccggtgaagtagacccgcccgccaaccggcgcc 438 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3874 cattgtagtgctcgctggtgtgctccccggtgaagtagacccgcccgccaaccggcgcc 3816 Score = 299 bits (151), Expect = 5e-78 Identities = 154/155 (99%) Strand = Plus / Minus Query: 437 cccggagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagccct 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3690 cccggagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagccct 3631 Query: 497 tgaagaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacgtccc 556 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 3630 tgaagaatcggttggaccaccagcgcagcacgtagatatcggtggcgtcggggacgtccc 3571 Query: 557 ggtcggggaacatgttgcgcagcacgcccacggcc 591 ||||||||||||||||||||||||||||||||||| Sbjct: 3570 ggtcggggaacatgttgcgcagcacgcccacggcc 3536 Score = 200 bits (101), Expect = 4e-48 Identities = 101/101 (100%) Strand = Plus / Minus Query: 162 aaaagcttccacgttaactgtggcacgcgtctgagtttattccatgacgatgcatgcgag 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4217 aaaagcttccacgttaactgtggcacgcgtctgagtttattccatgacgatgcatgcgag 4158 Query: 222 cagactggcatggcatctcaacttcctccttcatttagcct 262 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 4157 cagactggcatggcatctcaacttcctccttcatttagcct 4117
>emb|AJ298131.1|HVU298131 Hordeum vulgare mRNA for polyamine oxidase (bpao1 gene) Length = 1583 Score = 216 bits (109), Expect = 6e-53 Identities = 210/243 (86%), Gaps = 3/243 (1%) Strand = Plus / Minus Query: 328 atcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtag 387 ||||||||||| || |||| ||||||| |||||||||||| |||||||| || |||||| Sbjct: 1478 atcagaatgtctgcagagtcaatacctgaaagataagctccatggacataaccgttgtag 1419 Query: 388 tgctcgctggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctgg 447 ||||||||||||||||||||||||||||| |||| |||| ||||| |||| ||||||| Sbjct: 1418 tgctcgctggtgtgctccccggtgaagtaaaccctcccg---accggtgccctgagctgg 1362 Query: 448 tcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcgg 507 ||||| ||||||||||||||||||||||||||||||||| ||| |||| || |||| | | Sbjct: 1361 tcgtattcgtagcggttgacgccgatgggccagttggagaaggtgcccctgtagaacctg 1302 Query: 508 ttggaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtcggggaac 567 | ||||||||| || |||||| ||| || || ||||||||||||||| | |||||||| Sbjct: 1301 tcggaccaccaccgtggcacgaggatgtccgtcgcgtcggggacgtcctcgccggggaac 1242 Query: 568 atg 570 ||| Sbjct: 1241 atg 1239
>ref|XM_450667.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 184 bits (93), Expect = 2e-43 Identities = 206/243 (84%), Gaps = 3/243 (1%) Strand = Plus / Minus Query: 328 atcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtag 387 |||||||| || || |||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 1418 atcagaatctctgcagagtcaatacctgcaagataagctccatggacatagccattgtag 1359 Query: 388 tgctcgctggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctgg 447 ||||||| |||||||| ||||||||||| || | | ||||||||||||| ||||||| Sbjct: 1358 cgctcgctcgtgtgctcaccggtgaagtacactctc---ccaaccggcgccctgagctgg 1302 Query: 448 tcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcgg 507 || ||||||||||| ||||||||||||||||||||||| || |||| |||||| | | Sbjct: 1301 tcatactcgtagcgactgacgccgatgggccagttggagaagctgccccggaagaacctg 1242 Query: 508 ttggaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtcggggaac 567 | ||||||||| | ||| ||| ||| ||||||||||||||||| ||| ||| |||||| Sbjct: 1241 tcggaccaccatctcgggacgaggatgtcggtggcgtcggggacatcctcgtcagggaac 1182 Query: 568 atg 570 ||| Sbjct: 1181 atg 1179
>emb|AJ002204.1|ZMJ002204 Zea mays mRNA for flavin containing polyamine oxidase (PAO) Length = 1750 Score = 184 bits (93), Expect = 2e-43 Identities = 212/251 (84%), Gaps = 3/251 (1%) Strand = Plus / Minus Query: 331 agaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtagtgc 390 ||||| || ||||||| ||||||| |||||| ||||| ||||||||||||||||||||| Sbjct: 1514 agaatttcagcggagtcgatacctgaaagataggctccatggacatagccattgtagtgc 1455 Query: 391 tcgctggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctggtcg 450 |||||||||||||| ||||||||||| |||| | |||||||| |||| ||||||||| Sbjct: 1454 tcgctggtgtgctcgccggtgaagtataccctc---ccaaccggtgccctaagctggtcg 1398 Query: 451 tactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcggttg 510 || ||||||||||||||||| | |||||||||||| ||| ||||||| |||| | || | Sbjct: 1397 tattcgtagcggttgacgccaactggccagttggagaaggtgcccttgtagaacctgtcg 1338 Query: 511 gaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtcggggaacatg 570 |||||||| | ||| || ||| ||||||||||| ||||||||| | |||||||||| Sbjct: 1337 gaccaccacctcgggacaaggatgtcggtggcgtccgggacgtccttgccggggaacatc 1278 Query: 571 ttgcgcagcac 581 || |||||||| Sbjct: 1277 ttccgcagcac 1267
>gb|AY107888.1| Zea mays PCO061908 mRNA sequence Length = 1895 Score = 184 bits (93), Expect = 2e-43 Identities = 212/251 (84%), Gaps = 3/251 (1%) Strand = Plus / Minus Query: 331 agaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtagtgc 390 ||||| || ||||||| ||||||| |||||| ||||| ||||||||||||||||||||| Sbjct: 1520 agaatttcagcggagtcgatacctgaaagataggctccatggacatagccattgtagtgc 1461 Query: 391 tcgctggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctggtcg 450 |||||||||||||| ||||||||||| |||| | |||||||| |||| ||||||||| Sbjct: 1460 tcgctggtgtgctcgccggtgaagtataccctc---ccaaccggtgccctaagctggtcg 1404 Query: 451 tactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcggttg 510 || ||||||||||||||||| | |||||||||||| ||| ||||||| |||| | || | Sbjct: 1403 tattcgtagcggttgacgccaactggccagttggagaaggtgcccttgtagaacctgtcg 1344 Query: 511 gaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtcggggaacatg 570 |||||||| | ||| || ||| ||||||||||| ||||||||| | |||||||||| Sbjct: 1343 gaccaccacctcgggacaaggatgtcggtggcgtccgggacgtccttgccggggaacatc 1284 Query: 571 ttgcgcagcac 581 || |||||||| Sbjct: 1283 ttccgcagcac 1273
>ref|XM_470573.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 182 bits (92), Expect = 9e-43 Identities = 214/254 (84%), Gaps = 3/254 (1%) Strand = Plus / Minus Query: 328 atcagaatgtccgcggagtgtatacctgcaagataagctccgtggacatagccattgtag 387 |||||||| ||||| |||| ||||||||||||||| |||| |||||||||||||||||| Sbjct: 989 atcagaatttccgcagagtcaatacctgcaagataacctccatggacatagccattgtag 930 Query: 388 tgctcgctggtgtgctccccggtgaagtagacccgcccgccaaccggcgcccggagctgg 447 | |||||| |||||||| ||||||||||| |||| | ||| ||| |||| ||||||| Sbjct: 929 tactcgcttgtgtgctcaccggtgaagtaaaccctc---tcaatcggggccctgagctgg 873 Query: 448 tcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaagaatcgg 507 || || ||||||||||||||||| ||||||||||||||| ||| ||||||| |||| | | Sbjct: 872 tcatattcgtagcggttgacgccaatgggccagttggagaaggtgcccttgtagaacctg 813 Query: 508 ttggaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtcggggaac 567 || |||||||| | || ||| ||| || |||||||| ||||||||| |||| |||||| Sbjct: 812 tttgaccaccatcttgggacgaggatgtcagtggcgtcagggacgtcctggtcagggaac 753 Query: 568 atgttgcgcagcac 581 ||||| | |||||| Sbjct: 752 atgttcctcagcac 739
>emb|AJ251568.1|ZMA251568 Zea mays PAO gene for flavin containing polyamine oxidase, exons 1-8 Length = 4096 Score = 176 bits (89), Expect = 5e-41 Identities = 196/231 (84%), Gaps = 3/231 (1%) Strand = Plus / Minus Query: 351 acctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccggt 410 ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 3900 acctgaaagataggctccatggacatagccattgtagtgctcgctggtgtgctcgccggt 3841 Query: 411 gaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgacgcc 470 |||||| |||| | |||||||| |||| ||||||||||| ||||||||||||||||| Sbjct: 3840 gaagtataccctc---ccaaccggtgccctaagctggtcgtattcgtagcggttgacgcc 3784 Query: 471 gatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcacgta 530 | |||||||||||| ||| ||||||| |||| | || ||||||||| | ||| || Sbjct: 3783 aactggccagttggagaaggtgcccttgtagaacctgtcggaccaccacctcgggacaag 3724 Query: 531 gatatcggtggcgtcggggacgtcccggtcggggaacatgttgcgcagcac 581 ||| ||||||||||| ||||||||| | |||||||||| || |||||||| Sbjct: 3723 gatgtcggtggcgtccgggacgtccttgccggggaacatcttccgcagcac 3673
>emb|AJ251018.1|ZMA251018 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO2 Length = 4344 Score = 176 bits (89), Expect = 5e-41 Identities = 196/231 (84%), Gaps = 3/231 (1%) Strand = Plus / Minus Query: 351 acctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccggt 410 ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 4147 acctgaaagataggctccatggacatagccattgtagtgctcgctggtgtgctcaccggt 4088 Query: 411 gaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgacgcc 470 |||||| |||| | |||||||| |||| ||||||||||| ||||||||||||||||| Sbjct: 4087 gaagtataccctc---ccaaccggtgccctaagctggtcgtattcgtagcggttgacgcc 4031 Query: 471 gatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcacgta 530 | |||||||||||| ||| ||||||| |||| | || ||||||||| | ||| || Sbjct: 4030 aactggccagttggagaaggtgcccttgtagaacctgtcggaccaccatctcgggacaag 3971 Query: 531 gatatcggtggcgtcggggacgtcccggtcggggaacatgttgcgcagcac 581 ||| ||||||||||| ||||||||| | |||||||||| || |||||||| Sbjct: 3970 gatgtcggtggcgtccgggacgtccttgccggggaacatcttccgcagcac 3920
>emb|AJ251019.1|ZMA251019 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO3 Length = 3384 Score = 168 bits (85), Expect = 1e-38 Identities = 195/231 (84%), Gaps = 3/231 (1%) Strand = Plus / Minus Query: 351 acctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccggt 410 ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 3188 acctgaaagataggctccatggacatagccattgtagtgctcgctggtgtgctcaccggt 3129 Query: 411 gaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgacgcc 470 |||||| |||| | |||||||| |||| ||||||||||| ||||||||||||||||| Sbjct: 3128 gaagtataccctc---ccaaccggtgccctaagctggtcgtattcgtagcggttgacgcc 3072 Query: 471 gatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcacgta 530 | |||||||| ||| ||| ||||||| |||| | || ||||||||| | ||| || Sbjct: 3071 aactggccagttagagaaggtgcccttgtagaacctgtcggaccaccacctcgggacaag 3012 Query: 531 gatatcggtggcgtcggggacgtcccggtcggggaacatgttgcgcagcac 581 ||| ||||||||||| ||||||||| | |||||||||| || |||||||| Sbjct: 3011 gatgtcggtggcgtctgggacgtccttgccggggaacatcttccgcagcac 2961
>ref|XM_450669.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1588 Score = 167 bits (84), Expect = 5e-38 Identities = 188/222 (84%), Gaps = 3/222 (1%) Strand = Plus / Minus Query: 349 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 408 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 1430 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 1371 Query: 409 gtgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgacg 468 ||||| ||||| | | ||||||||||||| ||||||||| | |||||||| ||||| Sbjct: 1370 gtgaaatagactctc---ccaaccggcgccctgagctggtcatgttcgtagcgactgacg 1314 Query: 469 ccgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcacg 528 |||||||||||||||||| || ||| | |||||| | || |||||||| | ||| ||| Sbjct: 1313 ccgatgggccagttggagaagctgccttggaagaacctgtccgaccaccatctcgggacg 1254 Query: 529 tagatatcggtggcgtcggggacgtcccggtcggggaacatg 570 ||| ||||||||||||||||||||| ||| ||||||||| Sbjct: 1253 aggatgtcggtggcgtcggggacgtcctcgtcagggaacatg 1212
>dbj|AK069392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014L10, full insert sequence Length = 1587 Score = 167 bits (84), Expect = 5e-38 Identities = 188/222 (84%), Gaps = 3/222 (1%) Strand = Plus / Minus Query: 349 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 408 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 1429 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 1370 Query: 409 gtgaagtagacccgcccgccaaccggcgcccggagctggtcgtactcgtagcggttgacg 468 ||||| ||||| | | ||||||||||||| ||||||||| | |||||||| ||||| Sbjct: 1369 gtgaaatagactctc---ccaaccggcgccctgagctggtcatgttcgtagcgactgacg 1313 Query: 469 ccgatgggccagttggagtaggagcccttgaagaatcggttggaccaccagcgcggcacg 528 |||||||||||||||||| || ||| | |||||| | || |||||||| | ||| ||| Sbjct: 1312 ccgatgggccagttggagaagctgccttggaagaacctgtccgaccaccatctcgggacg 1253 Query: 529 tagatatcggtggcgtcggggacgtcccggtcggggaacatg 570 ||| ||||||||||||||||||||| ||| ||||||||| Sbjct: 1252 aggatgtcggtggcgtcggggacgtcctcgtcagggaacatg 1211
>emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin containing polyamine oxidase, exons 1-9 Length = 2942 Score = 107 bits (54), Expect = 4e-20 Identities = 72/78 (92%) Strand = Plus / Minus Query: 349 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 408 ||||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct: 2711 atacctgaaagataagctccatggacataaccgttgtagtgctcgctggtgtgctccccg 2652 Query: 409 gtgaagtagacccgcccg 426 |||||||| |||| |||| Sbjct: 2651 gtgaagtaaaccctcccg 2634 Score = 107 bits (54), Expect = 4e-20 Identities = 111/130 (85%) Strand = Plus / Minus Query: 441 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 500 |||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| || | Sbjct: 2490 gagctggtcgtattcgtagcggttgacgccgatgggccagttggagaaggtgcccctgta 2431 Query: 501 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtc 560 ||| | || ||||||||| || ||||| ||| || || ||||||||||||||| | | Sbjct: 2430 gaacctgtcggaccaccaccgtggcactaggatgtccgtcgcgtcggggacgtcctcgcc 2371 Query: 561 ggggaacatg 570 |||||||||| Sbjct: 2370 ggggaacatg 2361
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 105 bits (53), Expect = 2e-19 Identities = 119/141 (84%) Strand = Plus / Minus Query: 441 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 500 ||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||| | Sbjct: 4848050 gagctggtcatattcgtagcggttgacgccaatgggccagttggagaaggtgcccttgta 4847991 Query: 501 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtc 560 ||| | ||| |||||||| | || ||| ||| || |||||||| ||||||||| |||| Sbjct: 4847990 gaacctgtttgaccaccatcttgggacgaggatgtcagtggcgtcagggacgtcctggtc 4847931 Query: 561 ggggaacatgttgcgcagcac 581 ||||||||||| | |||||| Sbjct: 4847930 agggaacatgttcctcagcac 4847910 Score = 103 bits (52), Expect = 6e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 346 tgtatacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctcc 405 |||||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||| Sbjct: 4848268 tgtatacctgcaagataacctccatggacatagccattgtagtactcgcttgtgtgctca 4848209 Query: 406 ccggtgaagtagaccc 421 ||||||||||| |||| Sbjct: 4848208 ccggtgaagtaaaccc 4848193
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16, complete sequence Length = 159092 Score = 105 bits (53), Expect = 2e-19 Identities = 119/141 (84%) Strand = Plus / Plus Query: 441 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 500 ||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||| | Sbjct: 147497 gagctggtcatattcgtagcggttgacgccaatgggccagttggagaaggtgcccttgta 147556 Query: 501 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtc 560 ||| | ||| |||||||| | || ||| ||| || |||||||| ||||||||| |||| Sbjct: 147557 gaacctgtttgaccaccatcttgggacgaggatgtcagtggcgtcagggacgtcctggtc 147616 Query: 561 ggggaacatgttgcgcagcac 581 ||||||||||| | |||||| Sbjct: 147617 agggaacatgttcctcagcac 147637 Score = 103 bits (52), Expect = 6e-19 Identities = 70/76 (92%) Strand = Plus / Plus Query: 346 tgtatacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctcc 405 |||||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||| Sbjct: 147279 tgtatacctgcaagataacctccatggacatagccattgtagtactcgcttgtgtgctca 147338 Query: 406 ccggtgaagtagaccc 421 ||||||||||| |||| Sbjct: 147339 ccggtgaagtaaaccc 147354
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 105 bits (53), Expect = 2e-19 Identities = 119/141 (84%) Strand = Plus / Minus Query: 441 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 500 ||||||||| || ||||||||||||||||| ||||||||||||||| ||| ||||||| | Sbjct: 4847265 gagctggtcatattcgtagcggttgacgccaatgggccagttggagaaggtgcccttgta 4847206 Query: 501 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtc 560 ||| | ||| |||||||| | || ||| ||| || |||||||| ||||||||| |||| Sbjct: 4847205 gaacctgtttgaccaccatcttgggacgaggatgtcagtggcgtcagggacgtcctggtc 4847146 Query: 561 ggggaacatgttgcgcagcac 581 ||||||||||| | |||||| Sbjct: 4847145 agggaacatgttcctcagcac 4847125 Score = 103 bits (52), Expect = 6e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 346 tgtatacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctcc 405 |||||||||||||||||| |||| ||||||||||||||||||| |||||| |||||||| Sbjct: 4847483 tgtatacctgcaagataacctccatggacatagccattgtagtactcgcttgtgtgctca 4847424 Query: 406 ccggtgaagtagaccc 421 ||||||||||| |||| Sbjct: 4847423 ccggtgaagtaaaccc 4847408
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 103 bits (52), Expect = 6e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 349 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 408 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 12092784 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 12092843 Query: 409 gtgaagta 416 |||||||| Sbjct: 12092844 gtgaagta 12092851 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 349 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 408 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 12113134 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 12113193 Query: 409 gtgaagtagac 419 ||||| ||||| Sbjct: 12113194 gtgaaatagac 12113204 Score = 91.7 bits (46), Expect = 2e-15 Identities = 109/130 (83%) Strand = Plus / Plus Query: 441 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 500 ||||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||| Sbjct: 12092982 gagctggtcatactcgtagcgactgacgccgatgggccagttggagaagctgccccggaa 12093041 Query: 501 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtc 560 ||| | || ||||||||| | ||| ||| ||| ||||||||||||||||| ||| ||| Sbjct: 12093042 gaacctgtcggaccaccatctcgggacgaggatgtcggtggcgtcggggacatcctcgtc 12093101 Query: 561 ggggaacatg 570 ||||||||| Sbjct: 12093102 agggaacatg 12093111 Score = 75.8 bits (38), Expect = 1e-10 Identities = 107/130 (82%) Strand = Plus / Plus Query: 441 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 500 ||||||||| | |||||||| ||||||||||||||||||||||| || ||| | ||| Sbjct: 12113376 gagctggtcatgttcgtagcgactgacgccgatgggccagttggagaagctgccttggaa 12113435 Query: 501 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtc 560 ||| | || |||||||| | ||| ||| ||| ||||||||||||||||||||| ||| Sbjct: 12113436 gaacctgtccgaccaccatctcgggacgaggatgtcggtggcgtcggggacgtcctcgtc 12113495 Query: 561 ggggaacatg 570 ||||||||| Sbjct: 12113496 agggaacatg 12113505
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1759_F09 Length = 149501 Score = 103 bits (52), Expect = 6e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 349 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 408 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 4243 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 4302 Query: 409 gtgaagta 416 |||||||| Sbjct: 4303 gtgaagta 4310 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 349 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 408 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 24593 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 24652 Query: 409 gtgaagtagac 419 ||||| ||||| Sbjct: 24653 gtgaaatagac 24663 Score = 91.7 bits (46), Expect = 2e-15 Identities = 109/130 (83%) Strand = Plus / Plus Query: 441 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 500 ||||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||| Sbjct: 4441 gagctggtcatactcgtagcgactgacgccgatgggccagttggagaagctgccccggaa 4500 Query: 501 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtc 560 ||| | || ||||||||| | ||| ||| ||| ||||||||||||||||| ||| ||| Sbjct: 4501 gaacctgtcggaccaccatctcgggacgaggatgtcggtggcgtcggggacatcctcgtc 4560 Query: 561 ggggaacatg 570 ||||||||| Sbjct: 4561 agggaacatg 4570 Score = 75.8 bits (38), Expect = 1e-10 Identities = 107/130 (82%) Strand = Plus / Plus Query: 441 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 500 ||||||||| | |||||||| ||||||||||||||||||||||| || ||| | ||| Sbjct: 24835 gagctggtcatgttcgtagcgactgacgccgatgggccagttggagaagctgccttggaa 24894 Query: 501 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtc 560 ||| | || |||||||| | ||| ||| ||| ||||||||||||||||||||| ||| Sbjct: 24895 gaacctgtccgaccaccatctcgggacgaggatgtcggtggcgtcggggacgtcctcgtc 24954 Query: 561 ggggaacatg 570 ||||||||| Sbjct: 24955 agggaacatg 24964
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0564H06 Length = 146823 Score = 103 bits (52), Expect = 6e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 349 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 408 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 27163 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 27222 Query: 409 gtgaagta 416 |||||||| Sbjct: 27223 gtgaagta 27230 Score = 101 bits (51), Expect = 3e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 349 atacctgcaagataagctccgtggacatagccattgtagtgctcgctggtgtgctccccg 408 |||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||| Sbjct: 47513 atacctgcaagataagctccatggacatagccattgtagcgctcgctcgtgtgctcaccg 47572 Query: 409 gtgaagtagac 419 ||||| ||||| Sbjct: 47573 gtgaaatagac 47583 Score = 91.7 bits (46), Expect = 2e-15 Identities = 109/130 (83%) Strand = Plus / Plus Query: 441 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 500 ||||||||| ||||||||||| ||||||||||||||||||||||| || |||| ||| Sbjct: 27361 gagctggtcatactcgtagcgactgacgccgatgggccagttggagaagctgccccggaa 27420 Query: 501 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtc 560 ||| | || ||||||||| | ||| ||| ||| ||||||||||||||||| ||| ||| Sbjct: 27421 gaacctgtcggaccaccatctcgggacgaggatgtcggtggcgtcggggacatcctcgtc 27480 Query: 561 ggggaacatg 570 ||||||||| Sbjct: 27481 agggaacatg 27490 Score = 75.8 bits (38), Expect = 1e-10 Identities = 107/130 (82%) Strand = Plus / Plus Query: 441 gagctggtcgtactcgtagcggttgacgccgatgggccagttggagtaggagcccttgaa 500 ||||||||| | |||||||| ||||||||||||||||||||||| || ||| | ||| Sbjct: 47755 gagctggtcatgttcgtagcgactgacgccgatgggccagttggagaagctgccttggaa 47814 Query: 501 gaatcggttggaccaccagcgcggcacgtagatatcggtggcgtcggggacgtcccggtc 560 ||| | || |||||||| | ||| ||| ||| ||||||||||||||||||||| ||| Sbjct: 47815 gaacctgtccgaccaccatctcgggacgaggatgtcggtggcgtcggggacgtcctcgtc 47874 Query: 561 ggggaacatg 570 ||||||||| Sbjct: 47875 agggaacatg 47884
>gb|AC096691.6| Oryza sativa chromosome 10 BAC OSJNBa0083M08 genomic sequence, complete sequence Length = 106110 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 370 tggacatagccattgtagtgctcgctggtgtgctccccggtgaa 413 |||||||||||||||||||| ||||| |||||||| || ||||| Sbjct: 41460 tggacatagccattgtagtgttcgcttgtgtgctcgcctgtgaa 41503
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 370 tggacatagccattgtagtgctcgctggtgtgctccccggtgaa 413 |||||||||||||||||||| ||||| |||||||| || ||||| Sbjct: 11026776 tggacatagccattgtagtgttcgcttgtgtgctcgcctgtgaa 11026733
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 370 tggacatagccattgtagtgctcgctggtgtgctccccggtgaa 413 |||||||||||||||||||| ||||| |||||||| || ||||| Sbjct: 11033216 tggacatagccattgtagtgttcgcttgtgtgctcgcctgtgaa 11033173
>gb|AC110085.3| Homo sapiens BAC clone RP11-603P13 from 4, complete sequence Length = 80015 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 acatcaaattcttggggaaaa 165 ||||||||||||||||||||| Sbjct: 19517 acatcaaattcttggggaaaa 19497
>emb|AL928639.5| Mouse DNA sequence from clone RP23-446O17 on chromosome 2, complete sequence Length = 177843 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 475 ggccagttggagtaggagccc 495 ||||||||||||||||||||| Sbjct: 67336 ggccagttggagtaggagccc 67356
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06, complete sequence Length = 139139 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 gacccgcccgccaaccggcg 436 |||||||||||||||||||| Sbjct: 41732 gacccgcccgccaaccggcg 41751
>ref|XM_627096.1| Cryptosporidium parvum Iowa II mannose-6-phosphate isomerase (cgd8_1920), partial mRNA Length = 1731 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 aattacaagaaattacatca 54 |||||||||||||||||||| Sbjct: 445 aattacaagaaattacatca 426
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 gacccgcccgccaaccggcg 436 |||||||||||||||||||| Sbjct: 27677174 gacccgcccgccaaccggcg 27677193 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,692,552 Number of Sequences: 3902068 Number of extensions: 3692552 Number of successful extensions: 60726 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60516 Number of HSP's gapped (non-prelim): 184 length of query: 591 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 568 effective length of database: 17,143,297,704 effective search space: 9737393095872 effective search space used: 9737393095872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)