ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19j02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550092.1| Oryza sativa (japonica cultivar-group), mRNA 228 2e-56
2dbj|AK065031.1| Oryza sativa (japonica cultivar-group) cDNA clon... 228 2e-56
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 125 3e-25
4dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic D... 125 3e-25
5dbj|AK062266.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 2e-04
6emb|BX470112.27| Zebrafish DNA sequence from clone DKEYP-1B2 in ... 46 0.19
7gb|AC022721.9| Homo sapiens, clone RP11-191H13, complete sequence 44 0.75
8dbj|AB040121.1| Bacillus sp. B-3 plasmid pA01 DNA, complete genome 44 0.75
9gb|M64604.1|BC1REP Plasmid pBC1 (from Bacillus coagulans) replic... 44 0.75
10emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 3.0
11emb|BX649443.16| Human DNA sequence from clone CTD-2589D3 on chr... 42 3.0
12emb|BX276089.8| Human DNA sequence from clone RP11-69I17 on chro... 42 3.0
13gb|AC041005.20| Homo sapiens chromosome 8, clone RP11-69M11, com... 42 3.0
14gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, comple... 42 3.0
15emb|BX510338.6| Zebrafish DNA sequence from clone CH211-202F5 in... 42 3.0
16gb|AC008575.7| Homo sapiens chromosome 5 clone CTC-554D6, comple... 42 3.0
17gb|AC079463.3|AC079463 Homo sapiens chromosome 5 clone CTB-123N6... 42 3.0
18gb|AC007679.4| Homo sapiens BAC clone RP11-273D4 from 2, complet... 42 3.0
19emb|BX323557.8| Zebrafish DNA sequence from clone DKEYP-86B9 in ... 42 3.0
20emb|BX072549.4| Zebrafish DNA sequence from clone CH211-114A17 i... 42 3.0 
>ref|XM_550092.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2054

 Score =  228 bits (115), Expect = 2e-56
 Identities = 205/235 (87%)
 Strand = Plus / Minus

                                                                       
Query: 275 gaagaaaaaccttaaattcatcgccaaatttgttctctagtcgagttgtgatcttttcaa 334
           ||||||||| |||| ||| ||| |||||||||||||  || ||| |||||||||| ||| 
Sbjct: 741 gaagaaaaagcttatattgatcaccaaatttgttctgcagccgatttgtgatcttctcat 682

                                                                       
Query: 335 aacttttggctggcacaccacgcaagttccctttaaatagtattccaccctcgtaaggct 394
           ||||||| ||||||  ||||||||| || || ||||| |||||||||||||| |||||||
Sbjct: 681 aactttttgctggctgaccacgcaaatttcccttaaacagtattccaccctcataaggct 622

                                                                       
Query: 395 cgtggctggtcacgaagaacgtgtcaaaactgaaaacttgatcctttagaatgtctactg 454
           | |||||||||||||| |||||||||||||  |||||||||||||| |||||||||| ||
Sbjct: 621 cctggctggtcacgaaaaacgtgtcaaaaccaaaaacttgatccttgagaatgtctattg 562

                                                                  
Query: 455 tagccttggggatactcacagcttcttcaagctgttgcttcattccaggcaaagg 509
           ||||||||||||| || |||| ||| ||||| |||||||||||||| ||||||||
Sbjct: 561 tagccttggggatcctgacagattcatcaagttgttgcttcattcctggcaaagg 507



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 166  ttttattttgctactgcaaggagcactggagc 197
            ||||||||||||||||||||||||| ||||||
Sbjct: 1845 ttttattttgctactgcaaggagcaatggagc 1814
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>dbj|AK065031.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001G24, full
           insert sequence
          Length = 2054

 Score =  228 bits (115), Expect = 2e-56
 Identities = 205/235 (87%)
 Strand = Plus / Minus

                                                                       
Query: 275 gaagaaaaaccttaaattcatcgccaaatttgttctctagtcgagttgtgatcttttcaa 334
           ||||||||| |||| ||| ||| |||||||||||||  || ||| |||||||||| ||| 
Sbjct: 741 gaagaaaaagcttatattgatcaccaaatttgttctgcagccgatttgtgatcttctcat 682

                                                                       
Query: 335 aacttttggctggcacaccacgcaagttccctttaaatagtattccaccctcgtaaggct 394
           ||||||| ||||||  ||||||||| || || ||||| |||||||||||||| |||||||
Sbjct: 681 aactttttgctggctgaccacgcaaatttcccttaaacagtattccaccctcataaggct 622

                                                                       
Query: 395 cgtggctggtcacgaagaacgtgtcaaaactgaaaacttgatcctttagaatgtctactg 454
           | |||||||||||||| |||||||||||||  |||||||||||||| |||||||||| ||
Sbjct: 621 cctggctggtcacgaaaaacgtgtcaaaaccaaaaacttgatccttgagaatgtctattg 562

                                                                  
Query: 455 tagccttggggatactcacagcttcttcaagctgttgcttcattccaggcaaagg 509
           ||||||||||||| || |||| ||| ||||| |||||||||||||| ||||||||
Sbjct: 561 tagccttggggatcctgacagattcatcaagttgttgcttcattcctggcaaagg 507



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 166  ttttattttgctactgcaaggagcactggagc 197
            ||||||||||||||||||||||||| ||||||
Sbjct: 1845 ttttattttgctactgcaaggagcaatggagc 1814
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  125 bits (63), Expect = 3e-25
 Identities = 99/111 (89%)
 Strand = Plus / Plus

                                                                           
Query: 383     cctcgtaaggctcgtggctggtcacgaagaacgtgtcaaaactgaaaacttgatccttta 442
               |||| |||||||| |||||||||||||| |||||||||||||  |||||||||||||| |
Sbjct: 2268335 cctcataaggctcctggctggtcacgaaaaacgtgtcaaaaccaaaaacttgatccttga 2268394

                                                                  
Query: 443     gaatgtctactgtagccttggggatactcacagcttcttcaagctgttgct 493
               ||||||||| ||||||||||||||| || |||| ||| ||||| |||||||
Sbjct: 2268395 gaatgtctattgtagccttggggatcctgacagattcatcaagttgttgct 2268445



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                           
Query: 320     ttgtgatcttttcaaaacttttggctggcacaccacgcaagttccctttaaatagtattc 379
               |||||||||| ||| ||||||| ||||||  ||||||||| || || ||||| |||||||
Sbjct: 2268012 ttgtgatcttctcataactttttgctggctgaccacgcaaatttcccttaaacagtattc 2268071

                     
Query: 380     caccct 385
               ||||||
Sbjct: 2268072 caccct 2268077



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                               
Query: 166     ttttattttgctactgcaaggagcactggagc 197
               ||||||||||||||||||||||||| ||||||
Sbjct: 2265490 ttttattttgctactgcaaggagcaatggagc 2265521
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>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0019D06
          Length = 167405

 Score =  125 bits (63), Expect = 3e-25
 Identities = 99/111 (89%)
 Strand = Plus / Plus

                                                                         
Query: 383   cctcgtaaggctcgtggctggtcacgaagaacgtgtcaaaactgaaaacttgatccttta 442
             |||| |||||||| |||||||||||||| |||||||||||||  |||||||||||||| |
Sbjct: 51919 cctcataaggctcctggctggtcacgaaaaacgtgtcaaaaccaaaaacttgatccttga 51978

                                                                
Query: 443   gaatgtctactgtagccttggggatactcacagcttcttcaagctgttgct 493
             ||||||||| ||||||||||||||| || |||| ||| ||||| |||||||
Sbjct: 51979 gaatgtctattgtagccttggggatcctgacagattcatcaagttgttgct 52029



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                         
Query: 320   ttgtgatcttttcaaaacttttggctggcacaccacgcaagttccctttaaatagtattc 379
             |||||||||| ||| ||||||| ||||||  ||||||||| || || ||||| |||||||
Sbjct: 51596 ttgtgatcttctcataactttttgctggctgaccacgcaaatttcccttaaacagtattc 51655

                   
Query: 380   caccct 385
             ||||||
Sbjct: 51656 caccct 51661



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                             
Query: 166   ttttattttgctactgcaaggagcactggagc 197
             ||||||||||||||||||||||||| ||||||
Sbjct: 49074 ttttattttgctactgcaaggagcaatggagc 49105
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>dbj|AK062266.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-H11, full
            insert sequence
          Length = 1198

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 166  ttttattttgctactgcaaggagcactggagc 197
            ||||||||||||||||||||||||| ||||||
Sbjct: 1061 ttttattttgctactgcaaggagcaatggagc 1030
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>emb|BX470112.27| Zebrafish DNA sequence from clone DKEYP-1B2 in linkage group 12,
             complete sequence
          Length = 155303

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 419   caaaactgaaaacttgatccttt 441
             |||||||||||||||||||||||
Sbjct: 43670 caaaactgaaaacttgatccttt 43692
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>gb|AC022721.9| Homo sapiens, clone RP11-191H13, complete sequence
          Length = 164354

 Score = 44.1 bits (22), Expect = 0.75
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 684   cccttggaatttctcaagtgat 705
             ||||||||||||||||||||||
Sbjct: 41756 cccttggaatttctcaagtgat 41735
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>dbj|AB040121.1| Bacillus sp. B-3 plasmid pA01 DNA, complete genome
          Length = 3325

 Score = 44.1 bits (22), Expect = 0.75
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 153  aaaactcctgcttttttatttt 174
            ||||||||||||||||||||||
Sbjct: 2398 aaaactcctgcttttttatttt 2419
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>gb|M64604.1|BC1REP Plasmid pBC1 (from Bacillus coagulans) replicative protein (rep)
            gene, complete cds
          Length = 1615

 Score = 44.1 bits (22), Expect = 0.75
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 153  aaaactcctgcttttttatttt 174
            ||||||||||||||||||||||
Sbjct: 1398 aaaactcctgcttttttatttt 1419
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 752     gtctgcgcggcgctgtcagcg 772
               |||||||||||||||||||||
Sbjct: 3594463 gtctgcgcggcgctgtcagcg 3594483
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>emb|BX649443.16| Human DNA sequence from clone CTD-2589D3 on chromosome X Contains part
             of the DHRSX gene for dehydrogenase/reductase (SDR family)
             X-linked and a novel gene, complete sequence
          Length = 79564

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 512   agccactagcaacattaacatcagc 536
             ||||||||||||||| |||||||||
Sbjct: 30342 agccactagcaacatgaacatcagc 30366
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>emb|BX276089.8| Human DNA sequence from clone RP11-69I17 on chromosome 6, complete
             sequence
          Length = 54274

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 53    cagcagaattgaacagatgaa 73
             |||||||||||||||||||||
Sbjct: 30551 cagcagaattgaacagatgaa 30571
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>gb|AC041005.20| Homo sapiens chromosome 8, clone RP11-69M11, complete sequence
          Length = 87471

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 540   caccacctgctcctgcgcagc 560
             |||||||||||||||||||||
Sbjct: 18159 caccacctgctcctgcgcagc 18179
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>gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, complete sequence
          Length = 170363

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 681  atacccttggaatttctcaagtgat 705
            |||||||||||||||||| ||||||
Sbjct: 3218 atacccttggaatttctcgagtgat 3242
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>emb|BX510338.6| Zebrafish DNA sequence from clone CH211-202F5 in linkage group 5,
             complete sequence
          Length = 87819

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 146   acaagaaaaaactcctgcttt 166
             |||||||||||||||||||||
Sbjct: 19849 acaagaaaaaactcctgcttt 19869
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>gb|AC008575.7| Homo sapiens chromosome 5 clone CTC-554D6, complete sequence
          Length = 168285

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 681   atacccttggaatttctcaagtgat 705
             |||||||||||||||||| ||||||
Sbjct: 84995 atacccttggaatttctcgagtgat 84971
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>gb|AC079463.3|AC079463 Homo sapiens chromosome 5 clone CTB-123N6, complete sequence
          Length = 106514

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 681   atacccttggaatttctcaagtgat 705
             |||||||||||||||||| ||||||
Sbjct: 18837 atacccttggaatttctcgagtgat 18861
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>gb|AC007679.4| Homo sapiens BAC clone RP11-273D4 from 2, complete sequence
          Length = 170033

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 210    caagctattcttatgatcaca 230
              |||||||||||||||||||||
Sbjct: 101068 caagctattcttatgatcaca 101048
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>emb|BX323557.8| Zebrafish DNA sequence from clone DKEYP-86B9 in linkage group 5,
             complete sequence
          Length = 223754

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   ttttttattttgctactgcaa 184
             |||||||||||||||||||||
Sbjct: 63767 ttttttattttgctactgcaa 63747
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>emb|BX072549.4| Zebrafish DNA sequence from clone CH211-114A17 in linkage group 5,
             complete sequence
          Length = 167182

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   ttttttattttgctactgcaa 184
             |||||||||||||||||||||
Sbjct: 99176 ttttttattttgctactgcaa 99156


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,218,825
Number of Sequences: 3902068
Number of extensions: 8218825
Number of successful extensions: 159932
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 159797
Number of HSP's gapped (non-prelim): 135
length of query: 854
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 831
effective length of database: 17,143,297,704
effective search space: 14246080392024
effective search space used: 14246080392024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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