ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19j01 |
|---|---|
| Clone Library Name | barley_pub |
>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein| At1g12440 Length = 168 Score = 99.8 bits (247), Expect = 4e-21 Identities = 44/77 (57%), Positives = 60/77 (77%), Gaps = 2/77 (2%) Frame = -3 Query: 489 GPSEAA-MESPKGPS-RCSTCRKRVGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMD 316 G S AA ++ PK + RC +C K+VG+TGF CRCG+ +C THRY + HEC+FD++ A + Sbjct: 92 GDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVARE 151 Query: 315 AIAKANPVVKAEKLDKI 265 AIAKANPVVKA+K+D+I Sbjct: 152 AIAKANPVVKADKVDRI 168
>ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger protein ISAP1| (Stress-associated protein 1) (OsISAP1) Length = 164 Score = 98.2 bits (243), Expect = 1e-20 Identities = 42/76 (55%), Positives = 54/76 (71%) Frame = -3 Query: 501 ADIAGPSEAAMESPKGPSRCSTCRKRVGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAA 322 A + A + +RCS CRKRVGLTGF CRCG+L+C HRYSD+H C +DY++AA Sbjct: 86 ASALATAPAPVAKTSAVNRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAA 145 Query: 321 MDAIAKANPVVKAEKL 274 DAIA+ NPVV+A K+ Sbjct: 146 RDAIARDNPVVRAAKI 161
>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 97.8 bits (242), Expect = 2e-20 Identities = 48/90 (53%), Positives = 59/90 (65%), Gaps = 6/90 (6%) Frame = -3 Query: 516 ITAQPADIAGPS-----EAAMESPKGP-SRCSTCRKRVGLTGFNCRCGNLYCATHRYSDK 355 +T ++ PS E A E PK +RC CRK+VGLTGF+CRCGNL+C HRYSDK Sbjct: 124 VTQPSPSVSQPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDK 183 Query: 354 HECKFDYRAAAMDAIAKANPVVKAEKLDKI 265 H C +DY+A A I K NPVV AEK+ +I Sbjct: 184 HNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 97.8 bits (242), Expect = 2e-20 Identities = 48/90 (53%), Positives = 59/90 (65%), Gaps = 6/90 (6%) Frame = -3 Query: 516 ITAQPADIAGPS-----EAAMESPKGP-SRCSTCRKRVGLTGFNCRCGNLYCATHRYSDK 355 +T ++ PS E A E PK +RC CRK+VGLTGF+CRCGNL+C HRYSDK Sbjct: 124 VTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDK 183 Query: 354 HECKFDYRAAAMDAIAKANPVVKAEKLDKI 265 H C +DY+A A I K NPVV AEK+ +I Sbjct: 184 HNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing protein| At4g12040 Length = 175 Score = 96.7 bits (239), Expect = 3e-20 Identities = 40/88 (45%), Positives = 60/88 (68%), Gaps = 4/88 (4%) Frame = -3 Query: 516 ITAQPADIAGPSEAAMESPKGP----SRCSTCRKRVGLTGFNCRCGNLYCATHRYSDKHE 349 +TA+P+ + +E P P +RC +C K+VG+ GF C+CG+ +C +HRY +KHE Sbjct: 88 VTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHE 147 Query: 348 CKFDYRAAAMDAIAKANPVVKAEKLDKI 265 C FD++ DAIAKANP+VKA+K+ +I Sbjct: 148 CSFDFKEVGRDAIAKANPLVKADKVQRI 175
>ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein| At2g36320 Length = 161 Score = 93.6 bits (231), Expect = 3e-19 Identities = 39/66 (59%), Positives = 50/66 (75%) Frame = -3 Query: 462 PKGPSRCSTCRKRVGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKA 283 P+ P+RC+ CRKRVGLTGF CRCG +C +HRY + H C FD+++A + IAKANP+V A Sbjct: 96 PQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIA 155 Query: 282 EKLDKI 265 KL KI Sbjct: 156 AKLQKI 161
>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 47.0 bits (110), Expect = 3e-05 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = -3 Query: 486 PSEAAMESPKGPSRCSTCRKRVGLTGF---NCRCGNLYCATHRYSDKHECKFDYRAAAMD 316 P E+ K RC C+ ++ L +CRCG ++C HR ++H+C FD+ Sbjct: 143 PEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGR--- 199 Query: 315 AIAKANPVVKAEKLDKI*ERVGKT 244 + ++K KLD+ +VG++ Sbjct: 200 --GREEAIMKMVKLDR---KVGRS 218
>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 47.0 bits (110), Expect = 3e-05 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = -3 Query: 486 PSEAAMESPKGPSRCSTCRKRVGLTGF---NCRCGNLYCATHRYSDKHECKFDYRAAAMD 316 P E+ K RC C+ ++ L +CRCG ++C HR ++H+C FD+ Sbjct: 143 PEESGRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGR--- 199 Query: 315 AIAKANPVVKAEKLDKI*ERVGKT 244 + ++K KLD+ +VG++ Sbjct: 200 --GREEAIMKMVKLDR---KVGRS 218
>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog| Length = 226 Score = 44.7 bits (104), Expect = 2e-04 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Frame = -3 Query: 486 PSEAAMESPKGPSRCSTCRKRVGLTGF---NCRCGNLYCATHRYSDKHECKFDYRAAAMD 316 P ++ K RC C+ ++ L +CRCG ++C HR ++H+C FD+ Sbjct: 142 PDNSSRSKQKSRRRCFRCQIKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGR--- 198 Query: 315 AIAKANPVVKAEKLDKI*ERVGKT 244 + ++K KLD+ +VG++ Sbjct: 199 --GREEAIMKMVKLDR---KVGRS 217
>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Frame = -3 Query: 480 EAAMESPKGPSRCSTCRKRVGLTGF---NCRCGNLYCATHRYSDKHECKFDYRAAAMDAI 310 E + K RC C+ ++ L +CRCG ++C HR ++H+C FD+ Sbjct: 145 ETSRSKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGR----- 199 Query: 309 AKANPVVKAEKLDKI*ERVGKT 244 + ++K KLD+ +VG++ Sbjct: 200 GREEAIMKMVKLDR---KVGRS 218
>ERBB2_MESAU (Q60553) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1254 Score = 35.0 bits (79), Expect = 0.12 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -1 Query: 212 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 96 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>ERBB2_CANFA (O18735) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) Length = 1259 Score = 35.0 bits (79), Expect = 0.12 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -1 Query: 212 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 96 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>ERBB2_HUMAN (P04626) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) (Tyrosine kinase-type cell surface receptor HER2) (MLN 19) Length = 1255 Score = 35.0 bits (79), Expect = 0.12 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -1 Query: 212 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 96 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>ERBB2_RAT (P06494) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) (Epidermal growth factor receptor-related protein) Length = 1257 Score = 31.6 bits (70), Expect = 1.4 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -1 Query: 212 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 96 S C+ A L F+H+G C L C A+V + T + P G Sbjct: 251 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMHNPEG 288
>SNX18_MOUSE (Q91ZR2) Sorting nexin-18 (Sorting nexin-associated Golgi protein| 1) Length = 614 Score = 31.6 bits (70), Expect = 1.4 Identities = 14/24 (58%), Positives = 18/24 (75%) Frame = -2 Query: 490 WSQRGGHGEPQRPKPVQHLQKEGR 419 WSQ GHGEPQ P+ + HL++ GR Sbjct: 208 WSQELGHGEPQ-PQSLLHLRQVGR 230
>PEP7_YEAST (P32609) Vacuolar segregation protein PEP7 (Protein VAC1) (Vacuolar| protein sorting 19) Length = 515 Score = 31.2 bits (69), Expect = 1.8 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = -3 Query: 459 KGPSRCSTCRKRVG--LTGFNCR-CGNLYCATH 370 KG S C TC + + + NCR CG LYC H Sbjct: 73 KGKSCCHTCGRTLNNNIGAINCRKCGKLYCRRH 105
>ECAR_ECHCA (Q90495) Ecarin precursor (EC 3.4.24.-)| Length = 616 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 7/44 (15%) Frame = -3 Query: 435 CRKRVGLTG--FNC-----RCGNLYCATHRYSDKHECKFDYRAA 325 C K +G G F C +CG LYC + + CK DY A Sbjct: 542 CTKEIGYYGKRFPCAPQDVKCGRLYCLDNSFKKNMRCKNDYSYA 585
>ERBB2_MOUSE (P70424) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1256 Score = 30.8 bits (68), Expect = 2.3 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -1 Query: 212 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 96 S C+ A L F+H+G C L C A++ + T + P G Sbjct: 251 SDCL-ACLHFNHSGICELHCPALITYNTDTFESMLNPEG 288
>OXAA_RHIME (Q92SF5) Inner membrane protein oxaA| Length = 594 Score = 30.4 bits (67), Expect = 3.0 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 7/69 (10%) Frame = -1 Query: 203 VFAALSFHHAGFCNLSCWAIVMHGT-----RASAAAPGPNG--LLVGYVV*ALFMVVSLR 45 +F L F F +L W I+M T R + P P L V FM+ S Sbjct: 488 LFGLLPFEGPAFLHLGIWPIIMGVTMFLQMRMNPTPPDPTQAMLFTWMPVVFTFMLASFP 547 Query: 44 GGTVRYWAF 18 G V YWA+ Sbjct: 548 AGLVIYWAW 556
>RVXX_VIPLE (Q7T046) Coagulation factor X-activating enzyme heavy chain| precursor (EC 3.4.24.58) (VLFXA heavy chain) (Coagulation factor X-activating enzyme alpha-chain) [Contains: Coagulation factor X-activating enzyme heavy chain alternate form] Length = 612 Score = 30.0 bits (66), Expect = 4.0 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Frame = -3 Query: 468 ESPKGPSRCSTCRKRVG----LTGFNCRCGNLYCATHRYSDKHECKFDYR 331 E+ KG S CRK G + +CG LYC + +K+ CK YR Sbjct: 530 ENQKG-SYYGYCRKENGRKIPCAPQDIKCGRLYCLDNSPGNKNPCKMHYR 578
>Y455_METJA (Q57897) Hypothetical protein MJ0455| Length = 193 Score = 29.6 bits (65), Expect = 5.2 Identities = 18/79 (22%), Positives = 40/79 (50%) Frame = -3 Query: 447 RCSTCRKRVGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDK 268 +CS C K++ TG +C+ T + ++++ + + + A + A +A +K +L++ Sbjct: 2 KCSQCNKKLCYTGKDCKKD----ITQKIIEEYKKEENLKIAEVSAYIEATYYMKKTRLEE 57 Query: 267 I*ERVGKTEGPKINLRYLV 211 I E E KI + + + Sbjct: 58 IIEFCKLMEYKKIGIAFCI 76
>HELS_METTH (O26901) Putative ski2-type helicase (EC 3.6.1.-)| Length = 690 Score = 29.6 bits (65), Expect = 5.2 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -1 Query: 236 PKSICATSSSCVFAALSFHHAGFCN 162 P S C + C+ A ++FHHAG N Sbjct: 278 PTSTCLKLAECLEAGIAFHHAGLFN 302
>ZFN2B_MOUSE (Q91X58) AN1-type zinc finger protein 2B| Length = 257 Score = 29.3 bits (64), Expect = 6.8 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -3 Query: 441 STCRKRVGLTGFNCRCGNLYCATHRYSDKHEC 346 S CR+R + RCG +C HR+ HEC Sbjct: 103 SGCRQREMMKLTCDRCGRNFCIKHRHPLDHEC 134
>HM14_CAEEL (P20271) Homeobox protein ceh-14| Length = 351 Score = 29.3 bits (64), Expect = 6.8 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 Query: 447 RCSTCRKRVGLTGFNCRCGNLYCATHRY 364 RCSTC+ +G T F R ++YC H Y Sbjct: 74 RCSTCKDELGATCF-LREDSMYCRAHFY 100
>LRP1_CHICK (P98157) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) Length = 4543 Score = 28.9 bits (63), Expect = 8.9 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -3 Query: 489 GPSEAAMESPKGPSRCSTCRKRVGLTGFNCRCGNLYCATHRYSDKHEC 346 G + + +PKG CS +RV F C+ N C H D+ EC Sbjct: 2482 GCQDLCLLTPKGHVNCSCRGERVLQEDFTCKALNSTCNVH---DEFEC 2526
>YNP5_YEAST (P53899) Hypothetical 31.5 kDa protein in YGP1-YCK2 intergenic| region Length = 274 Score = 28.9 bits (63), Expect = 8.9 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Frame = -3 Query: 477 AAMESPKGP----SRCSTCRKRVGLTGFNCR-CGNLYCATHRYSDKHECKF 340 AA+E G C+ CR+ + F+C C +C+ HR + H C++ Sbjct: 3 AAIEKETGMLDVGKHCAYCRQ-LDFLPFHCSFCNEDFCSNHRLKEDHHCRW 52
>HYPA_CHLTE (Q8KBI8) Probable hydrogenase nickel incorporation protein hypA| Length = 113 Score = 28.9 bits (63), Expect = 8.9 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -3 Query: 495 IAGPSEAAMESPKGPSRCSTCRKRVGLTGFNCRC 394 +A +E +E P+G RC C +T F +C Sbjct: 56 LAEGAELVIEEPEGRGRCEACGAEFPVTSFYAKC 89
>DLL1_HUMAN (O00548) Delta-like protein 1 precursor (Drosophila Delta homolog| 1) (Delta1) (H-Delta-1) Length = 723 Score = 28.9 bits (63), Expect = 8.9 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 11/55 (20%) Frame = -3 Query: 477 AAMESPKGP----SRCS-------TCRKRVGLTGFNCRCGNLYCATHRYSDKHEC 346 +AM GP RCS +CR VG +GFNC YC++ S+ +C Sbjct: 366 SAMTCADGPCFNGGRCSDSPDGGYSCRCPVGYSGFNCEKKIDYCSSSPCSNGAKC 420
>DGK1_DROME (Q01583) Diacylglycerol kinase 1 (EC 2.7.1.107) (Diglyceride kinase| 1) (DGK 1) (DAG kinase 1) Length = 1020 Score = 28.9 bits (63), Expect = 8.9 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = -3 Query: 447 RCSTCRKRV----GLTGFNCR-CGNLYCATHRYSDKHEC 346 RCS CRKR+ G+TG CR C + S K EC Sbjct: 269 RCSKCRKRIKAYHGITGLTCRWCHMMLHNRCASSVKKEC 307 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,223,339 Number of Sequences: 219361 Number of extensions: 1250998 Number of successful extensions: 3833 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3670 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3832 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3927707336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
