ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19i23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470007.1| Oryza sativa (japonica cultivar-group), mRNA 414 e-112
2dbj|AB007501.1| Oryza sativa (japonica cultivar-group) mRNA for ... 414 e-112
3gb|AY104947.1| Zea mays PCO094214 mRNA sequence 272 2e-69
4dbj|AB007502.1| Zea mays mRNA for squalene synthase, complete cds 266 9e-68
5ref|XM_477025.1| Oryza sativa (japonica cultivar-group), mRNA 145 2e-31
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 145 2e-31
7gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genom... 145 2e-31
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
9dbj|AK063341.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 2e-31
10emb|AJ430610.1|MTR430610 Medicago truncatula mRNA for farnesyl-d... 68 4e-08
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 62 3e-06
12dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic D... 62 3e-06
13gb|AY230869.1| Phragmites australis clone PaGT9 microsatellite s... 60 1e-05
14gb|AY445506.1| Artemisia annua squalene synthase mRNA, complete cds 58 4e-05
15gb|AY445505.1| Artemisia annua squalene synthase gene, partial cds 58 4e-05
16gb|AF405310.1|AF405310 Artemisia annua squalene synthase gene, c... 58 4e-05
17gb|AF302464.2|AF302464 Artemisia annua squalene synthase mRNA, c... 58 4e-05
18gb|AF181557.1|AF181557 Artemisia annua squalene synthase (SQS1) ... 58 4e-05
19gb|AY964186.1| Bupleurum falcatum squalene synthase (SS1) mRNA, ... 56 2e-04
20gb|AF249900.1|AF249900 Citrus sinensis squalene synthase mRNA, p... 56 2e-04
21dbj|AB007503.1| Glycine max mRNA for squalene synthase, complete... 52 0.003
22gb|AC149293.21| Medicago truncatula clone mth2-78c5, complete se... 50 0.010
23gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 44 0.64
24dbj|AB102688.1| Lotus japonicus LjSqS mRNA for squalene synthase... 44 0.64
25dbj|D86410.1| Glycyrrhiza glabra mRNA for squalene synthase, com... 44 0.64
26ref|NM_010191.2| Mus musculus farnesyl diphosphate farnesyl tran... 42 2.5
27gb|BC054722.1| Mus musculus farnesyl diphosphate farnesyl transf... 42 2.5
28gb|AC090654.38| Mus musculus strain C57BL/6J clone rp23-329p1 ma... 42 2.5
29emb|AJ238762.1|RHE238762 Rickettsia helvetica ftsY (partial), po... 42 2.5
30dbj|AK136159.1| Mus musculus in vitro fertilized eggs cDNA, RIKE... 42 2.5
31dbj|AK146766.1| Mus musculus 17 days embryo kidney cDNA, RIKEN f... 42 2.5
32dbj|AK162294.1| Mus musculus adult male colon cDNA, RIKEN full-l... 42 2.5
33dbj|AK158633.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 42 2.5
34dbj|AK168629.1| Mus musculus 17 days pregnant adult female amnio... 42 2.5
35dbj|AK169317.1| Mus musculus 17 days embryo heart cDNA, RIKEN fu... 42 2.5
36dbj|AK076062.1| Mus musculus 11 days embryo whole body cDNA, RIK... 42 2.5
37gb|AF090311.1|MMFDFTI5 Mus musculus squalene synthase (Fdft1) ge... 42 2.5
38emb|CR392004.12| Zebrafish DNA sequence from clone CH211-165H11 ... 42 2.5
39emb|BX927103.12| Zebrafish DNA sequence from clone DKEY-262M23 i... 42 2.5
40dbj|D29016.1|MUSERG9 Mouse mRNA for squalene synthase 42 2.5
41ref|NM_183424.1| Mus musculus P518 precursor protein (P518), mRNA 40 9.9
42gb|AC112942.11| Mus musculus chromosome 7, clone RP23-449N21, co... 40 9.9
43gb|AC135637.5| Mus musculus BAC clone RP23-298I23 from chromosom... 40 9.9
44gb|AC132329.4| Mus musculus BAC clone RP24-206F15 from chromosom... 40 9.9
45gb|AC122476.4| Mus musculus BAC clone RP24-334L2 from chromosome... 40 9.9
46gb|AC122826.4| Mus musculus BAC clone RP23-209L3 from chromosome... 40 9.9
47emb|CR536619.20| Zebrafish DNA sequence from clone CH211-194H19 ... 40 9.9
48gb|U53181.1| Caenorhabditis elegans cosmid F36D4, complete sequence 40 9.9
49gb|AC183690.3| Cavia porcellus clone CH234-212D11, complete sequ... 40 9.9
50gb|AC156941.3| Mus musculus BAC clone RP23-25D8 from chromosome ... 40 9.9
51emb|AL451064.6| Human DNA sequence from clone RP11-177G23 on chr... 40 9.9
52emb|AL139095.15| Human DNA sequence from clone RP11-69L16 on chr... 40 9.9
53gb|AC158128.3| Mus musculus chromosome 15, clone RP24-310D6, com... 40 9.9
54gb|BC033349.1| Homo sapiens ubiquitin-conjugating enzyme E2D 2 (... 40 9.9
55gb|AC097633.2| Homo sapiens chromosome 3 clone RP11-96F15, compl... 40 9.9
56gb|AC124043.2| Homo sapiens chromosome 3 clone RP11-143A18, comp... 40 9.9
57dbj|AK093863.1| Homo sapiens cDNA FLJ36544 fis, clone TRACH2006378 40 9.9
58dbj|AK024294.1| Homo sapiens cDNA FLJ14232 fis, clone NT2RP4000035 40 9.9
59gb|AC012464.25| Homo sapiens 12 BAC RP11-1060G2 (Roswell Park Ca... 40 9.9
60gb|AC012417.13| Homo sapiens chromosome 18, clone RP11-408H20, c... 40 9.9
61gb|AC007213.6| Arabidopsis thaliana chromosome 2 clone T23O15 ma... 40 9.9
62dbj|AK029144.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 40 9.9
63emb|AL806520.36| Mouse DNA sequence from clone RP23-19M23 on chr... 40 9.9
64emb|BX296535.7| Zebrafish DNA sequence from clone CH211-234I2, c... 40 9.9
65emb|AJ970587.1| Candidatus Phytoplasma solani partial gene for P... 40 9.9
66gb|AC112957.14| Mus musculus chromosome 15, clone RP23-418C6, co... 40 9.9
67emb|BX927109.13| Zebrafish DNA sequence from clone CH211-80D23 i... 40 9.9
68gb|AC115976.13| Mus musculus chromosome 1, clone RP24-82A12, com... 40 9.9
69gb|AE000512.1| Thermotoga maritima MSB8, complete genome 40 9.9
70gb|AC174763.1| Gasterosteus aculeatus clone VMRC28-119C03, compl... 40 9.9
71emb|CT025617.12| Mouse DNA sequence from clone RP23-442A13 on ch... 40 9.9
72emb|AL929275.8| Mouse DNA sequence from clone RP23-65P13 on chro... 40 9.9
73emb|AL844891.7| Mouse DNA sequence from clone RP23-350N21 on chr... 40 9.9
74gb|AC108138.6| Homo sapiens chromosome 18, clone RP11-235B21, co... 40 9.9
75emb|AL845441.7| Mouse DNA sequence from clone RP23-327I5 on chro... 40 9.9
76emb|AL121653.2|CNS01DS3 BAC sequence from the SPG4 candidate reg... 40 9.9 
>ref|XM_470007.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1880

 Score =  414 bits (209), Expect = e-112
 Identities = 365/417 (87%)
 Strand = Plus / Minus

                                                                        
Query: 310  tacttcgacttctccaggtcgtatccccttctctttagcaacccagatgacttgcaagtt 369
            ||||| ||||||||||  ||||||||||||||||||||  | | |||||||||||| |||
Sbjct: 1434 tactttgacttctccaaatcgtatccccttctctttagtgagcaagatgacttgcaggtt 1375

                                                                        
Query: 370  ttctttattgcatctacacgcttccgtgtcagcgcagcatttgggtcgttatcatcaatc 429
             ||||||| ||||| ||||| ||||| || || | ||||||||| || |||| |||||||
Sbjct: 1374 ctctttatcgcatcaacacgtttccgcgttagggaagcatttggatcattattatcaatc 1315

                                                                        
Query: 430  ttcgactctagcaatgaagagaactcatagaaagcagaatagacatctgatatcgatttt 489
            ||||| |||| ||  |||||||||||||||||||||| |||||||||||| || |  |||
Sbjct: 1314 ttcgattctatcagcgaagagaactcatagaaagcagtatagacatctgacattgtgttt 1255

                                                                        
Query: 490  gtctcatcaattatccgtgcagtgagcccacgcctcatcttaacaactcctctaaagact 549
            |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1254 gtctcatcaattactcgtgcagtgagcccacgcctcatcttaacaactcctctaaagaca 1195

                                                                        
Query: 550  ttcacattattgtagcaaatagcacaggtcccaattgccattatctgaggtatcgcacaa 609
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1194 ttcacattattgtagcaaatagcacatgtcccaattgccattatctgaggtattgcacaa 1135

                                                                        
Query: 610  aaacgaaaattggaattgtcctttaatgctgacatgtattgaaggcagtcgtgggcatgg 669
            ||||| ||| ||| ||  ||||| ||||||||||||||||| |||||||| |  ||||| 
Sbjct: 1134 aaacggaaaatggcatgatccttcaatgctgacatgtattggaggcagtcttcagcatga 1075

                                                                     
Query: 670  atcaaagcattggtcaccatatcattcaagcactgcacggccttttctgaattttcc 726
              || ||| || ||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 1074 gacagagcgttagtcaccatatcattcaaacactgaactgccttttctgaattttcc 1018
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>dbj|AB007501.1| Oryza sativa (japonica cultivar-group) mRNA for squalene synthase,
            complete cds
          Length = 1875

 Score =  414 bits (209), Expect = e-112
 Identities = 365/417 (87%)
 Strand = Plus / Minus

                                                                        
Query: 310  tacttcgacttctccaggtcgtatccccttctctttagcaacccagatgacttgcaagtt 369
            ||||| ||||||||||  ||||||||||||||||||||  | | |||||||||||| |||
Sbjct: 1429 tactttgacttctccaaatcgtatccccttctctttagtgagcaagatgacttgcaggtt 1370

                                                                        
Query: 370  ttctttattgcatctacacgcttccgtgtcagcgcagcatttgggtcgttatcatcaatc 429
             ||||||| ||||| ||||| ||||| || || | ||||||||| || |||| |||||||
Sbjct: 1369 ctctttatcgcatcaacacgtttccgcgttagggaagcatttggatcattattatcaatc 1310

                                                                        
Query: 430  ttcgactctagcaatgaagagaactcatagaaagcagaatagacatctgatatcgatttt 489
            ||||| |||| ||  |||||||||||||||||||||| |||||||||||| || |  |||
Sbjct: 1309 ttcgattctatcagcgaagagaactcatagaaagcagtatagacatctgacattgtgttt 1250

                                                                        
Query: 490  gtctcatcaattatccgtgcagtgagcccacgcctcatcttaacaactcctctaaagact 549
            |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1249 gtctcatcaattactcgtgcagtgagcccacgcctcatcttaacaactcctctaaagaca 1190

                                                                        
Query: 550  ttcacattattgtagcaaatagcacaggtcccaattgccattatctgaggtatcgcacaa 609
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 1189 ttcacattattgtagcaaatagcacatgtcccaattgccattatctgaggtattgcacaa 1130

                                                                        
Query: 610  aaacgaaaattggaattgtcctttaatgctgacatgtattgaaggcagtcgtgggcatgg 669
            ||||| ||| ||| ||  ||||| ||||||||||||||||| |||||||| |  ||||| 
Sbjct: 1129 aaacggaaaatggcatgatccttcaatgctgacatgtattggaggcagtcttcagcatga 1070

                                                                     
Query: 670  atcaaagcattggtcaccatatcattcaagcactgcacggccttttctgaattttcc 726
              || ||| || ||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 1069 gacagagcgttagtcaccatatcattcaaacactgaactgccttttctgaattttcc 1013
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>gb|AY104947.1| Zea mays PCO094214 mRNA sequence
          Length = 1736

 Score =  272 bits (137), Expect = 2e-69
 Identities = 329/393 (83%)
 Strand = Plus / Minus

                                                                        
Query: 334  ccccttctctttagcaacccagatgacttgcaagttttctttattgcatctacacgcttc 393
            ||||| ||||||| ||| ||||||||||||||||||| |||||||| ||  ||  |  ||
Sbjct: 1278 cccctcctctttaccaaaccagatgacttgcaagtttgctttattgaattcacgtgtctc 1219

                                                                        
Query: 394  cgtgtcagcgcagcatttgggtcgttatcatcaatcttcgactctagcaatgaagagaac 453
            ||||| || ||||||||||| || || ||||||||||| ||||||| ||||||||| |||
Sbjct: 1218 cgtgttagagcagcatttggatcattgtcatcaatctttgactctatcaatgaagaaaac 1159

                                                                        
Query: 454  tcatagaaagcagaatagacatctgatatcgattttgtctcatcaattatccgtgcagtg 513
            ||||||||||| | |||||| ||||| || || |||||||| |||||||| ||||| |||
Sbjct: 1158 tcatagaaagcggtatagacgtctgacattgaatttgtctcgtcaattattcgtgccgtg 1099

                                                                        
Query: 514  agcccacgcctcatcttaacaactcctctaaagactttcacattattgtagcaaatagca 573
            || ||||| |||||||| ||||||||||||||||| | ||| ||||||||||||| ||||
Sbjct: 1098 agaccacgtctcatctttacaactcctctaaagacatgcacgttattgtagcaaagagca 1039

                                                                        
Query: 574  caggtcccaattgccattatctgaggtatcgcacaaaaacgaaaattggaattgtccttt 633
            || || ||||||||||||||||| || || || |||||||| ||  ||| || || ||| 
Sbjct: 1038 catgttccaattgccattatctggggaattgcgcaaaaacggaagatggcatggttcttc 979

                                                                        
Query: 634  aatgctgacatgtattgaaggcagtcgtgggcatggatcaaagcattggtcaccatatca 693
            || ||||||||||| |||||||| || | |||||| ||||  ||||| ||||| ||||| 
Sbjct: 978  aaggctgacatgtactgaaggcactcttcggcatgaatcagtgcattcgtcactatatcg 919

                                             
Query: 694  ttcaagcactgcacggccttttctgaattttcc 726
            |||||||| || || |||||||| | |||||||
Sbjct: 918  ttcaagcattgtactgccttttcggtattttcc 886



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 265  atagccgccaacaggagcacaatcatgatcagcat 299
            |||||| ||| |||||| |||||||||||||||||
Sbjct: 1344 atagccaccagcaggaggacaatcatgatcagcat 1310
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>dbj|AB007502.1| Zea mays mRNA for squalene synthase, complete cds
          Length = 1911

 Score =  266 bits (134), Expect = 9e-68
 Identities = 323/386 (83%)
 Strand = Plus / Minus

                                                                        
Query: 316  gacttctccaggtcgtatccccttctctttagcaacccagatgacttgcaagttttcttt 375
            ||||||||||  | ||| ||||||  ||||| ||| ||||||||||||||||||| ||||
Sbjct: 1252 gacttctccaaatggtaccccctttgctttaccaaaccagatgacttgcaagtttgcttt 1193

                                                                        
Query: 376  attgcatctacacgcttccgtgtcagcgcagcatttgggtcgttatcatcaatcttcgac 435
            |||| ||| |||||  || |||| || ||||||||||| ||  | ||||||||||| |||
Sbjct: 1192 attgaatccacacgtctctgtgttagagcagcatttggatcactgtcatcaatctttgac 1133

                                                                        
Query: 436  tctagcaatgaagagaactcatagaaagcagaatagacatctgatatcgattttgtctca 495
            |||| ||||||||| |||||||||||||||| |||||||||||  || || |||||||| 
Sbjct: 1132 tctatcaatgaagaaaactcatagaaagcagtatagacatctgtcattgagtttgtctcg 1073

                                                                        
Query: 496  tcaattatccgtgcagtgagcccacgcctcatcttaacaactcctctaaagactttcaca 555
            |||||||| ||||| ||||| ||||| |||||||| ||||||||||| ||||| | ||| 
Sbjct: 1072 tcaattattcgtgccgtgagaccacgtctcatcttcacaactcctctgaagacatgcacg 1013

                                                                        
Query: 556  ttattgtagcaaatagcacaggtcccaattgccattatctgaggtatcgcacaaaaacga 615
            ||||||||||||| |||||| || ||||||||||||||||| ||||| ||||||||||| 
Sbjct: 1012 ttattgtagcaaagagcacatgttccaattgccattatctggggtattgcacaaaaacgg 953

                                                                        
Query: 616  aaattggaattgtcctttaatgctgacatgtattgaaggcagtcgtgggcatggatcaaa 675
            ||| ||| |   ||||| || ||||||||||| |||||||| || |  ||||| ||||  
Sbjct: 952  aaaatggcaggatccttcaaggctgacatgtactgaaggcactcttcagcatgaatcagt 893

                                      
Query: 676  gcattggtcaccatatcattcaagca 701
            ||||  ||||||||||  ||||||||
Sbjct: 892  gcatcagtcaccatattgttcaagca 867
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>ref|XM_477025.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1533

 Score =  145 bits (73), Expect = 2e-31
 Identities = 238/293 (81%)
 Strand = Plus / Minus

                                                                        
Query: 322  tccaggtcgtatccccttctctttagcaacccagatgacttgcaagttttctttattgca 381
            |||| ||| ||||||||| |||| ||||| || ||||| ||||| || | ||||||||||
Sbjct: 1257 tccaagtcatatccccttatcttcagcaaaccggatgatttgcaggtctcctttattgca 1198

                                                                        
Query: 382  tctacacgcttccgtgtcagcgcagcatttgggtcgttatcatcaatcttcgactctagc 441
            |  ||||| |||||||| ||||  |||||||| || ||||||||||||||     | |||
Sbjct: 1197 ttcacacgtttccgtgtaagcgacgcatttggatcattatcatcaatcttttctgcaagc 1138

                                                                        
Query: 442  aatgaagagaactcatagaaagcagaatagacatctgatatcgattttgtctcatcaatt 501
            | ||||||||| |||||||||||||  || ||||| |  || || ||||| ||||  |||
Sbjct: 1137 agtgaagagaattcatagaaagcagtgtacacatcagccatagaatttgtttcattgatt 1078

                                                                        
Query: 502  atccgtgcagtgagcccacgcctcatcttaacaactcctctaaagactttcacattattg 561
            || |||||||| ||||||||||||| ||| |||||||||| ||| || |||||||| || 
Sbjct: 1077 attcgtgcagtcagcccacgcctcaacttcacaactcctcgaaatacattcacattgtta 1018

                                                                 
Query: 562  tagcaaatagcacaggtcccaattgccattatctgaggtatcgcacaaaaacg 614
            ||||| | |||| ||||  ||| |||||||| ||| ||||| |||||||||||
Sbjct: 1017 tagcacagagcataggttgcaagtgccattacctggggtattgcacaaaaacg 965
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  145 bits (73), Expect = 2e-31
 Identities = 79/81 (97%)
 Strand = Plus / Minus

                                                                            
Query: 517      ccacgcctcatcttaacaactcctctaaagactttcacattattgtagcaaatagcacag 576
                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 33306560 ccacgcctcatcttaacaactcctctaaagacattcacattattgtagcaaatagcacat 33306501

                                     
Query: 577      gtcccaattgccattatctga 597
                |||||||||||||||||||||
Sbjct: 33306500 gtcccaattgccattatctga 33306480



 Score =  105 bits (53), Expect = 2e-19
 Identities = 113/133 (84%)
 Strand = Plus / Minus

                                                                            
Query: 594      ctgaggtatcgcacaaaaacgaaaattggaattgtcctttaatgctgacatgtattgaag 653
                ||||||||| ||||||||||| ||| ||| ||  ||||| ||||||||||||||||| ||
Sbjct: 33305132 ctgaggtattgcacaaaaacggaaaatggcatgatccttcaatgctgacatgtattggag 33305073

                                                                            
Query: 654      gcagtcgtgggcatggatcaaagcattggtcaccatatcattcaagcactgcacggcctt 713
                |||||| |  |||||   || ||| || ||||||||||||||||| ||||| || |||||
Sbjct: 33305072 gcagtcttcagcatgagacagagcgttagtcaccatatcattcaaacactgaactgcctt 33305013

                             
Query: 714      ttctgaattttcc 726
                |||||||||||||
Sbjct: 33305012 ttctgaattttcc 33305000



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                            
Query: 445      gaagagaactcatagaaagcagaatagacatctgatatcgattttgtctcatcaattatc 504
                |||||||||||||||||||||| |||||||||||| || |  ||||||||||||||||  
Sbjct: 33307288 gaagagaactcatagaaagcagtatagacatctgacattgtgtttgtctcatcaattact 33307229

                              
Query: 505      cgtgcagtgagccc 518
                ||||||||||||||
Sbjct: 33307228 cgtgcagtgagccc 33307215



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                            
Query: 336      ccttctctttagcaacccagatgacttgcaagttttctttattgcatctacacgcttccg 395
                ||||||||||||  | | |||||||||||| ||| ||||||| ||||| ||||| |||||
Sbjct: 33307760 ccttctctttagtgagcaagatgacttgcaggttctctttatcgcatcaacacgtttccg 33307701

                                                   
Query: 396      tgtcagcgcagcatttgggtcgttatcatcaatct 430
                 || || | ||||||||| || |||| ||||||||
Sbjct: 33307700 cgttagggaagcatttggatcattattatcaatct 33307666
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>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete
             sequence
          Length = 122815

 Score =  145 bits (73), Expect = 2e-31
 Identities = 79/81 (97%)
 Strand = Plus / Minus

                                                                         
Query: 517   ccacgcctcatcttaacaactcctctaaagactttcacattattgtagcaaatagcacag 576
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 63076 ccacgcctcatcttaacaactcctctaaagacattcacattattgtagcaaatagcacat 63017

                                  
Query: 577   gtcccaattgccattatctga 597
             |||||||||||||||||||||
Sbjct: 63016 gtcccaattgccattatctga 62996



 Score =  105 bits (53), Expect = 2e-19
 Identities = 113/133 (84%)
 Strand = Plus / Minus

                                                                         
Query: 594   ctgaggtatcgcacaaaaacgaaaattggaattgtcctttaatgctgacatgtattgaag 653
             ||||||||| ||||||||||| ||| ||| ||  ||||| ||||||||||||||||| ||
Sbjct: 61648 ctgaggtattgcacaaaaacggaaaatggcatgatccttcaatgctgacatgtattggag 61589

                                                                         
Query: 654   gcagtcgtgggcatggatcaaagcattggtcaccatatcattcaagcactgcacggcctt 713
             |||||| |  |||||   || ||| || ||||||||||||||||| ||||| || |||||
Sbjct: 61588 gcagtcttcagcatgagacagagcgttagtcaccatatcattcaaacactgaactgcctt 61529

                          
Query: 714   ttctgaattttcc 726
             |||||||||||||
Sbjct: 61528 ttctgaattttcc 61516



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                         
Query: 445   gaagagaactcatagaaagcagaatagacatctgatatcgattttgtctcatcaattatc 504
             |||||||||||||||||||||| |||||||||||| || |  ||||||||||||||||  
Sbjct: 63804 gaagagaactcatagaaagcagtatagacatctgacattgtgtttgtctcatcaattact 63745

                           
Query: 505   cgtgcagtgagccc 518
             ||||||||||||||
Sbjct: 63744 cgtgcagtgagccc 63731



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                         
Query: 336   ccttctctttagcaacccagatgacttgcaagttttctttattgcatctacacgcttccg 395
             ||||||||||||  | | |||||||||||| ||| ||||||| ||||| ||||| |||||
Sbjct: 64276 ccttctctttagtgagcaagatgacttgcaggttctctttatcgcatcaacacgtttccg 64217

                                                
Query: 396   tgtcagcgcagcatttgggtcgttatcatcaatct 430
              || || | ||||||||| || |||| ||||||||
Sbjct: 64216 cgttagggaagcatttggatcattattatcaatct 64182
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  145 bits (73), Expect = 2e-31
 Identities = 79/81 (97%)
 Strand = Plus / Minus

                                                                            
Query: 517      ccacgcctcatcttaacaactcctctaaagactttcacattattgtagcaaatagcacag 576
                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 33397070 ccacgcctcatcttaacaactcctctaaagacattcacattattgtagcaaatagcacat 33397011

                                     
Query: 577      gtcccaattgccattatctga 597
                |||||||||||||||||||||
Sbjct: 33397010 gtcccaattgccattatctga 33396990



 Score =  105 bits (53), Expect = 2e-19
 Identities = 113/133 (84%)
 Strand = Plus / Minus

                                                                            
Query: 594      ctgaggtatcgcacaaaaacgaaaattggaattgtcctttaatgctgacatgtattgaag 653
                ||||||||| ||||||||||| ||| ||| ||  ||||| ||||||||||||||||| ||
Sbjct: 33395642 ctgaggtattgcacaaaaacggaaaatggcatgatccttcaatgctgacatgtattggag 33395583

                                                                            
Query: 654      gcagtcgtgggcatggatcaaagcattggtcaccatatcattcaagcactgcacggcctt 713
                |||||| |  |||||   || ||| || ||||||||||||||||| ||||| || |||||
Sbjct: 33395582 gcagtcttcagcatgagacagagcgttagtcaccatatcattcaaacactgaactgcctt 33395523

                             
Query: 714      ttctgaattttcc 726
                |||||||||||||
Sbjct: 33395522 ttctgaattttcc 33395510



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                            
Query: 445      gaagagaactcatagaaagcagaatagacatctgatatcgattttgtctcatcaattatc 504
                |||||||||||||||||||||| |||||||||||| || |  ||||||||||||||||  
Sbjct: 33397798 gaagagaactcatagaaagcagtatagacatctgacattgtgtttgtctcatcaattact 33397739

                              
Query: 505      cgtgcagtgagccc 518
                ||||||||||||||
Sbjct: 33397738 cgtgcagtgagccc 33397725



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                            
Query: 336      ccttctctttagcaacccagatgacttgcaagttttctttattgcatctacacgcttccg 395
                ||||||||||||  | | |||||||||||| ||| ||||||| ||||| ||||| |||||
Sbjct: 33398270 ccttctctttagtgagcaagatgacttgcaggttctctttatcgcatcaacacgtttccg 33398211

                                                   
Query: 396      tgtcagcgcagcatttgggtcgttatcatcaatct 430
                 || || | ||||||||| || |||| ||||||||
Sbjct: 33398210 cgttagggaagcatttggatcattattatcaatct 33398176
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>dbj|AK063341.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B01, full
            insert sequence
          Length = 1533

 Score =  145 bits (73), Expect = 2e-31
 Identities = 238/293 (81%)
 Strand = Plus / Minus

                                                                        
Query: 322  tccaggtcgtatccccttctctttagcaacccagatgacttgcaagttttctttattgca 381
            |||| ||| ||||||||| |||| ||||| || ||||| ||||| || | ||||||||||
Sbjct: 1257 tccaagtcatatccccttatcttcagcaaaccggatgatttgcaggtctcctttattgca 1198

                                                                        
Query: 382  tctacacgcttccgtgtcagcgcagcatttgggtcgttatcatcaatcttcgactctagc 441
            |  ||||| |||||||| ||||  |||||||| || ||||||||||||||     | |||
Sbjct: 1197 ttcacacgtttccgtgtaagcgacgcatttggatcattatcatcaatcttttctgcaagc 1138

                                                                        
Query: 442  aatgaagagaactcatagaaagcagaatagacatctgatatcgattttgtctcatcaatt 501
            | ||||||||| |||||||||||||  || ||||| |  || || ||||| ||||  |||
Sbjct: 1137 agtgaagagaattcatagaaagcagtgtacacatcagccatagaatttgtttcattgatt 1078

                                                                        
Query: 502  atccgtgcagtgagcccacgcctcatcttaacaactcctctaaagactttcacattattg 561
            || |||||||| ||||||||||||| ||| |||||||||| ||| || |||||||| || 
Sbjct: 1077 attcgtgcagtcagcccacgcctcaacttcacaactcctcgaaatacattcacattgtta 1018

                                                                 
Query: 562  tagcaaatagcacaggtcccaattgccattatctgaggtatcgcacaaaaacg 614
            ||||| | |||| ||||  ||| |||||||| ||| ||||| |||||||||||
Sbjct: 1017 tagcacagagcataggttgcaagtgccattacctggggtattgcacaaaaacg 965
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>emb|AJ430610.1|MTR430610 Medicago truncatula mRNA for farnesyl-diphosphate farnesyltransferase
            (sqs1 gene)
          Length = 1776

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 109/134 (81%)
 Strand = Plus / Minus

                                                                        
Query: 580  ccaattgccattatctgaggtatcgcacaaaaacgaaaattggaattgtcctttaatgct 639
            ||||||||||||| |||||| || |||||||| |||||||| ||   |||   |||||| 
Sbjct: 1142 ccaattgccattacctgaggaatagcacaaaagcgaaaattagaggagtctcgtaatgca 1083

                                                                        
Query: 640  gacatgtattgaaggcagtcgtgggcatggatcaaagcattggtcaccatatcattcaag 699
            ||||||||||| | ||| ||||  ||||| | ||||||||| || ||||| ||||| |||
Sbjct: 1082 gacatgtattgtaagcaatcgtcagcatgcagcaaagcattagtgaccatgtcatttaag 1023

                          
Query: 700  cactgcacggcctt 713
            || ||||| |||||
Sbjct: 1022 cattgcacagcctt 1009
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                           
Query: 336     ccttctctttagcaacccagatgacttgcaagttttctttattgcatctacacgcttccg 395
               |||| |||| ||||| || ||||| ||||| || | |||||||||||  ||||| |||||
Sbjct: 5477484 ccttatcttcagcaaaccggatgatttgcaggtctcctttattgcattcacacgtttccg 5477425

                                                  
Query: 396     tgtcagcgcagcatttgggtcgttatcatcaatct 430
               ||| ||||  |||||||| || |||||||||||||
Sbjct: 5477424 tgtaagcgacgcatttggatcattatcatcaatct 5477390



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 439     agcaatgaagagaactcatagaaagcag 466
               |||| ||||||||| |||||||||||||
Sbjct: 5476979 agcagtgaagagaattcatagaaagcag 5476952
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>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                          
Query: 336    ccttctctttagcaacccagatgacttgcaagttttctttattgcatctacacgcttccg 395
              |||| |||| ||||| || ||||| ||||| || | |||||||||||  ||||| |||||
Sbjct: 111465 ccttatcttcagcaaaccggatgatttgcaggtctcctttattgcattcacacgtttccg 111406

                                                 
Query: 396    tgtcagcgcagcatttgggtcgttatcatcaatct 430
              ||| ||||  |||||||| || |||||||||||||
Sbjct: 111405 tgtaagcgacgcatttggatcattatcatcaatct 111371



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 439    agcaatgaagagaactcatagaaagcag 466
              |||| ||||||||| |||||||||||||
Sbjct: 110960 agcagtgaagagaattcatagaaagcag 110933
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>gb|AY230869.1| Phragmites australis clone PaGT9 microsatellite sequence
          Length = 354

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Plus

                                                                       
Query: 336 ccttctctttagcaacccagatgacttgcaagttttctttattgcatctacacgcttccg 395
           ||||||||||| ||| || |||  | ||||||||| |||||||| ||| ||||| |||||
Sbjct: 97  ccttctctttaccaaaccggatagcatgcaagtttgctttattgaatccacacgtttccg 156

                             
Query: 396 tgtcagcgcagcatttgg 413
           ||| ||| ||||||||||
Sbjct: 157 tgttagcacagcatttgg 174
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>gb|AY445506.1| Artemisia annua squalene synthase mRNA, complete cds
          Length = 1257

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 670 atcaaagcattggtcaccatatcattcaagcactgcacggc 710
           ||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 794 atcaaagcatttgtcaccatatcatttaagcactgaacggc 754



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 556 ttattgtagcaaatagcacaggtcccaattgccattatctgaggtatcgcacaaaa 611
           ||||||||||| | ||||   || ||||||||||| ||||| ||||| ||||||||
Sbjct: 908 ttattgtagcataaagcaagtgttccaattgccatgatctgtggtattgcacaaaa 853
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>gb|AY445505.1| Artemisia annua squalene synthase gene, partial cds
          Length = 3590

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 670  atcaaagcattggtcaccatatcattcaagcactgcacggc 710
            ||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 2150 atcaaagcatttgtcaccatatcatttaagcactgaacggc 2110
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>gb|AF405310.1|AF405310 Artemisia annua squalene synthase gene, complete cds
          Length = 3852

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 670  atcaaagcattggtcaccatatcattcaagcactgcacggc 710
            ||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 2180 atcaaagcatttgtcaccatatcatttaagcactgaacggc 2140
to top
>gb|AF302464.2|AF302464 Artemisia annua squalene synthase mRNA, complete cds
          Length = 1539

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 670 atcaaagcattggtcaccatatcattcaagcactgcacggc 710
           ||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 817 atcaaagcatttgtcaccatatcatttaagcactgaacggc 777



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 580 ccaattgccattatctgaggtatcgcacaaaa 611
           ||||||||||| ||||| ||||| ||||||||
Sbjct: 907 ccaattgccatgatctgtggtattgcacaaaa 876
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>gb|AF181557.1|AF181557 Artemisia annua squalene synthase (SQS1) mRNA, partial cds
          Length = 371

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 670 atcaaagcattggtcaccatatcattcaagcactgcacggc 710
           ||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 293 atcaaagcatttgtcaccatatcatttaagcactgaacggc 253
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>gb|AY964186.1| Bupleurum falcatum squalene synthase (SS1) mRNA, complete cds
          Length = 1248

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 664 gcatggatcaaagcattggtcaccatatcattcaagcactgcacggccttttctga 719
           ||||| |||| |||||| || ||||||||||||||||| ||||| |||||| ||||
Sbjct: 800 gcatgtatcagagcatttgtaaccatatcattcaagcattgcactgcctttgctga 745
to top
>gb|AF249900.1|AF249900 Citrus sinensis squalene synthase mRNA, partial cds
          Length = 438

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 665 catggatcaaagcattggtcaccatatcattcaagcactg 704
           |||| |||| ||||||||| ||||||||||||||||||||
Sbjct: 349 catgcatcagagcattggtgaccatatcattcaagcactg 310
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>dbj|AB007503.1| Glycine max mRNA for squalene synthase, complete cds
          Length = 1590

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 580 ccaattgccattatctgaggtatcgcacaaaaacgaaa 617
           ||||||||||||||||| ||||| |||||||| |||||
Sbjct: 995 ccaattgccattatctggggtatagcacaaaagcgaaa 958
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>gb|AC149293.21| Medicago truncatula clone mth2-78c5, complete sequence
          Length = 111412

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                         
Query: 633   taatgctgacatgtattgaaggcagtcgtgggcatggatcaaagcattggtcaccatatc 692
             |||||| ||||||||||| | ||| ||||  ||||| | ||||||||| || ||||| ||
Sbjct: 17114 taatgcagacatgtattgtaagcaatcgtcagcatgcagcaaagcattagtgaccatgtc 17173

                                  
Query: 693   attcaagcactgcacggcctt 713
             ||| ||||| ||||| |||||
Sbjct: 17174 atttaagcattgcacagcctt 17194
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>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 473     catctgatatcgattttgtctcatca 498
               ||||||||||||||||| ||||||||
Sbjct: 1344166 catctgatatcgattttatctcatca 1344191
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>dbj|AB102688.1| Lotus japonicus LjSqS mRNA for squalene synthase, complete cds
          Length = 1899

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 580  ccaattgccattatctgaggtatcgcacaaaaacgaaa 617
            ||||||||||||||||| || || |||||||| |||||
Sbjct: 1138 ccaattgccattatctggggaatagcacaaaagcgaaa 1101
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>dbj|D86410.1| Glycyrrhiza glabra mRNA for squalene synthase, complete cds
           (GGSQS2)
          Length = 1473

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 580 ccaattgccattatctgaggtatcgcacaaaaacgaaa 617
           ||||||||||||||||| || || |||||||| |||||
Sbjct: 976 ccaattgccattatctggggaatagcacaaaagcgaaa 939
to top
>ref|NM_010191.2| Mus musculus farnesyl diphosphate farnesyl transferase 1 (Fdft1),
           mRNA
          Length = 2882

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 691 tcattcaagcactgcacggcc 711
           |||||||||||||||||||||
Sbjct: 794 tcattcaagcactgcacggcc 774
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>gb|BC054722.1| Mus musculus farnesyl diphosphate farnesyl transferase 1, mRNA
           (cDNA clone MGC:64758 IMAGE:5694816), complete cds
          Length = 2882

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 691 tcattcaagcactgcacggcc 711
           |||||||||||||||||||||
Sbjct: 794 tcattcaagcactgcacggcc 774
to top
>gb|AC090654.38| Mus musculus strain C57BL/6J clone rp23-329p1 map 14, complete sequence
          Length = 204267

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 691    tcattcaagcactgcacggcc 711
              |||||||||||||||||||||
Sbjct: 152726 tcattcaagcactgcacggcc 152746
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>emb|AJ238762.1|RHE238762 Rickettsia helvetica ftsY (partial), polA, dnaE (partial) and hicB
            genes and metK pseudogene
          Length = 8033

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 79   aaagaacaaaaacaattagca 99
            |||||||||||||||||||||
Sbjct: 6286 aaagaacaaaaacaattagca 6306
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>dbj|AK136159.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
            enriched library, clone:7420466C18 product:farnesyl
            diphosphate farnesyl transferase 1, full insert sequence
          Length = 2026

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 691  tcattcaagcactgcacggcc 711
            |||||||||||||||||||||
Sbjct: 1634 tcattcaagcactgcacggcc 1614
to top
>dbj|AK146766.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched
           library, clone:I920051L14 product:farnesyl diphosphate
           farnesyl transferase 1, full insert sequence
          Length = 1899

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 691 tcattcaagcactgcacggcc 711
           |||||||||||||||||||||
Sbjct: 860 tcattcaagcactgcacggcc 840
to top
>dbj|AK162294.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030012J22 product:farnesyl diphosphate
           farnesyl transferase 1, full insert sequence
          Length = 1635

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 691 tcattcaagcactgcacggcc 711
           |||||||||||||||||||||
Sbjct: 813 tcattcaagcactgcacggcc 793
to top
>dbj|AK158633.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched
           library, clone:K230034H05 product:farnesyl diphosphate
           farnesyl transferase 1, full insert sequence
          Length = 1664

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 691 tcattcaagcactgcacggcc 711
           |||||||||||||||||||||
Sbjct: 849 tcattcaagcactgcacggcc 829
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>dbj|AK168629.1| Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN
           full-length enriched library, clone:I920039L09
           product:farnesyl diphosphate farnesyl transferase 1,
           full insert sequence
          Length = 1606

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 691 tcattcaagcactgcacggcc 711
           |||||||||||||||||||||
Sbjct: 786 tcattcaagcactgcacggcc 766
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>dbj|AK169317.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched
           library, clone:I920183G05 product:farnesyl diphosphate
           farnesyl transferase 1, full insert sequence
          Length = 1684

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 691 tcattcaagcactgcacggcc 711
           |||||||||||||||||||||
Sbjct: 865 tcattcaagcactgcacggcc 845
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>dbj|AK076062.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2700060E05 product:farnesyl
           diphosphate farnesyl transferase 1, full insert sequence
          Length = 1666

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 691 tcattcaagcactgcacggcc 711
           |||||||||||||||||||||
Sbjct: 852 tcattcaagcactgcacggcc 832
to top
>gb|AF090311.1|MMFDFTI5 Mus musculus squalene synthase (Fdft1) gene, exon 6
          Length = 845

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 691 tcattcaagcactgcacggcc 711
           |||||||||||||||||||||
Sbjct: 298 tcattcaagcactgcacggcc 278
to top
>emb|CR392004.12| Zebrafish DNA sequence from clone CH211-165H11 in linkage group 18,
             complete sequence
          Length = 64955

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 71    acagaaataaagaacaaaaac 91
             |||||||||||||||||||||
Sbjct: 32520 acagaaataaagaacaaaaac 32500
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>emb|BX927103.12| Zebrafish DNA sequence from clone DKEY-262M23 in linkage group 18,
             complete sequence
          Length = 185008

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 71    acagaaataaagaacaaaaac 91
             |||||||||||||||||||||
Sbjct: 26303 acagaaataaagaacaaaaac 26283
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>dbj|D29016.1|MUSERG9 Mouse mRNA for squalene synthase
          Length = 1634

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 691 tcattcaagcactgcacggcc 711
           |||||||||||||||||||||
Sbjct: 802 tcattcaagcactgcacggcc 782
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>ref|NM_183424.1| Mus musculus P518 precursor protein (P518), mRNA
          Length = 2866

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  cacaaaaggaccatgttgac 232
            ||||||||||||||||||||
Sbjct: 2108 cacaaaaggaccatgttgac 2127
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>gb|AC112942.11| Mus musculus chromosome 7, clone RP23-449N21, complete sequence
          Length = 162570

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 611    aacgaaaattggaattgtcc 630
              ||||||||||||||||||||
Sbjct: 102528 aacgaaaattggaattgtcc 102509
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>gb|AC135637.5| Mus musculus BAC clone RP23-298I23 from chromosome 14, complete
             sequence
          Length = 130323

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   gttttctttattgcatctac 386
             ||||||||||||||||||||
Sbjct: 55386 gttttctttattgcatctac 55405
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>gb|AC132329.4| Mus musculus BAC clone RP24-206F15 from chromosome 18, complete sequence
          Length = 142250

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 404    cagcatttgggtcgttatcatcaa 427
              ||||||||||||| ||||||||||
Sbjct: 112824 cagcatttgggtctttatcatcaa 112801
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>gb|AC122476.4| Mus musculus BAC clone RP24-334L2 from chromosome 18, complete sequence
          Length = 200538

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    gttttctttattgcatctac 386
              ||||||||||||||||||||
Sbjct: 129774 gttttctttattgcatctac 129755
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>gb|AC122826.4| Mus musculus BAC clone RP23-209L3 from chromosome 18, complete sequence
          Length = 197208

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 404    cagcatttgggtcgttatcatcaa 427
              ||||||||||||| ||||||||||
Sbjct: 165414 cagcatttgggtctttatcatcaa 165437
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>emb|CR536619.20| Zebrafish DNA sequence from clone CH211-194H19 in linkage group 16,
            complete sequence
          Length = 179375

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 70   gacagaaataaagaacaaaa 89
            ||||||||||||||||||||
Sbjct: 7982 gacagaaataaagaacaaaa 7963
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>gb|U53181.1| Caenorhabditis elegans cosmid F36D4, complete sequence
          Length = 42041

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 70   gacagaaataaagaacaaaa 89
            ||||||||||||||||||||
Sbjct: 5773 gacagaaataaagaacaaaa 5754
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>gb|AC183690.3| Cavia porcellus clone CH234-212D11, complete sequence
          Length = 108490

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   ctcatagaaagcagaataga 472
             ||||||||||||||||||||
Sbjct: 27119 ctcatagaaagcagaataga 27138
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>gb|AC156941.3| Mus musculus BAC clone RP23-25D8 from chromosome 14, complete sequence
          Length = 214940

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   gttttctttattgcatctac 386
             ||||||||||||||||||||
Sbjct: 44914 gttttctttattgcatctac 44895
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>emb|AL451064.6| Human DNA sequence from clone RP11-177G23 on chromosome 6 Contains the
             the 5' end of the SH3BGRL2 gene for SH3 domain binding
             glutamic acid-rich protein-like 2 and a CpG island,
             complete sequence
          Length = 79743

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    aaataaagaacaaaaacaat 94
             ||||||||||||||||||||
Sbjct: 67987 aaataaagaacaaaaacaat 68006
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>emb|AL139095.15| Human DNA sequence from clone RP11-69L16 on chromosome 6 Contains the
             3' end of the RREB1 gene for ras responsive element
             binding protein 1, part of a novel gene, the SSR1 gene for
             signal sequence receptor alpha (translocon-associated
             protein alpha), the ATP5GP1 pseudogene (ATPsynthase, H+
             transporting, mitochondrial F0 complex, subunit c (subunit
             9)), a ribosomal protein S3 pseudogene, the CAGE1 gene for
             cancer antigen 1, the 5' end of the RIOK1 gene for RIO
             kinase 1 (yeast) and three CpG islands, complete sequence
          Length = 167206

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    aaagaacaaaaacaattagc 98
             ||||||||||||||||||||
Sbjct: 43926 aaagaacaaaaacaattagc 43907
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>gb|AC158128.3| Mus musculus chromosome 15, clone RP24-310D6, complete sequence
          Length = 158257

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 16     cagaaagtctctcctagattcaaa 39
              ||||||||||||||| ||||||||
Sbjct: 140565 cagaaagtctctccttgattcaaa 140588
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>gb|BC033349.1| Homo sapiens ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog,
            yeast), transcript variant 1, mRNA (cDNA clone MGC:42697
            IMAGE:4827210), complete cds
          Length = 1979

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 512  tgagcccacgcctcatctta 531
            ||||||||||||||||||||
Sbjct: 1160 tgagcccacgcctcatctta 1179
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>gb|AC097633.2| Homo sapiens chromosome 3 clone RP11-96F15, complete sequence
          Length = 159349

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 625   ttgtcctttaatgctgacatgtattgaa 652
             |||||||| ||||||||||||| |||||
Sbjct: 66004 ttgtccttgaatgctgacatgtcttgaa 66031
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>gb|AC124043.2| Homo sapiens chromosome 3 clone RP11-143A18, complete sequence
          Length = 160693

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 625  ttgtcctttaatgctgacatgtattgaa 652
            |||||||| ||||||||||||| |||||
Sbjct: 5699 ttgtccttgaatgctgacatgtcttgaa 5726
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>dbj|AK093863.1| Homo sapiens cDNA FLJ36544 fis, clone TRACH2006378
          Length = 2670

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 625 ttgtcctttaatgctgacatgtattgaa 652
           |||||||| ||||||||||||| |||||
Sbjct: 438 ttgtccttgaatgctgacatgtcttgaa 465
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>dbj|AK024294.1| Homo sapiens cDNA FLJ14232 fis, clone NT2RP4000035
          Length = 3193

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   aaagaacaaaaacaattagc 98
            ||||||||||||||||||||
Sbjct: 2993 aaagaacaaaaacaattagc 3012
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>gb|AC012464.25| Homo sapiens 12 BAC RP11-1060G2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 173765

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     agaaataaagaacaaaaaca 92
              ||||||||||||||||||||
Sbjct: 162041 agaaataaagaacaaaaaca 162022
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>gb|AC012417.13| Homo sapiens chromosome 18, clone RP11-408H20, complete sequence
          Length = 181552

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   ccagatgacttgcaagttttcttt 375
             |||| |||||||||||||||||||
Sbjct: 12937 ccagttgacttgcaagttttcttt 12914
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>gb|AC007213.6| Arabidopsis thaliana chromosome 2 clone T23O15 map RNS1, complete
             sequence
          Length = 81341

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    ataaagaacaaaaacaatta 96
             ||||||||||||||||||||
Sbjct: 24886 ataaagaacaaaaacaatta 24867
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>dbj|AK029144.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732496P06 product:hypothetical protein,
            full insert sequence
          Length = 2866

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  cacaaaaggaccatgttgac 232
            ||||||||||||||||||||
Sbjct: 2108 cacaaaaggaccatgttgac 2127
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>emb|AL806520.36| Mouse DNA sequence from clone RP23-19M23 on chromosome X, complete
             sequence
          Length = 190804

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   gttttctttattgcatctac 386
             ||||||||||||||||||||
Sbjct: 47405 gttttctttattgcatctac 47386
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>emb|BX296535.7| Zebrafish DNA sequence from clone CH211-234I2, complete sequence
          Length = 163120

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     gacagaaataaagaacaaaa 89
              ||||||||||||||||||||
Sbjct: 143064 gacagaaataaagaacaaaa 143083
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>emb|AJ970587.1| Candidatus Phytoplasma solani partial gene for PAM314 homologue,
           clone SDR0009 and SDR0012
          Length = 685

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 78  taaagaacaaaaacaattag 97
           ||||||||||||||||||||
Sbjct: 679 taaagaacaaaaacaattag 660
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>gb|AC112957.14| Mus musculus chromosome 15, clone RP23-418C6, complete sequence
          Length = 186051

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 16    cagaaagtctctcctagattcaaa 39
             ||||||||||||||| ||||||||
Sbjct: 73932 cagaaagtctctccttgattcaaa 73909
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>emb|BX927109.13| Zebrafish DNA sequence from clone CH211-80D23 in linkage group 18,
             complete sequence
          Length = 169784

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 111   agcagggtacatagcacaatacta 134
             |||||||||||||| |||||||||
Sbjct: 17629 agcagggtacatagaacaatacta 17606
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>gb|AC115976.13| Mus musculus chromosome 1, clone RP24-82A12, complete sequence
          Length = 222238

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 295    agcatgggcattctatactt 314
              ||||||||||||||||||||
Sbjct: 126200 agcatgggcattctatactt 126181
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>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    tcatgatcagcatgggcatt 306
              ||||||||||||||||||||
Sbjct: 436316 tcatgatcagcatgggcatt 436335
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>gb|AC174763.1| Gasterosteus aculeatus clone VMRC28-119C03, complete sequence
          Length = 138567

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    aaataaagaacaaaaacaat 94
             ||||||||||||||||||||
Sbjct: 35560 aaataaagaacaaaaacaat 35541
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>emb|CT025617.12| Mouse DNA sequence from clone RP23-442A13 on chromosome 9, complete
             sequence
          Length = 193308

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 367   gttttctttattgcatctac 386
             ||||||||||||||||||||
Sbjct: 92963 gttttctttattgcatctac 92944
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>emb|AL929275.8| Mouse DNA sequence from clone RP23-65P13 on chromosome 2, complete
              sequence
          Length = 197356

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    cacaaaaggaccatgttgac 232
              ||||||||||||||||||||
Sbjct: 145851 cacaaaaggaccatgttgac 145832
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>emb|AL844891.7| Mouse DNA sequence from clone RP23-350N21 on chromosome 2, complete
             sequence
          Length = 138602

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 538   cctctaaagactttcacatt 557
             ||||||||||||||||||||
Sbjct: 85299 cctctaaagactttcacatt 85280



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 626   tgtcctttaatgctgacatg 645
             ||||||||||||||||||||
Sbjct: 51619 tgtcctttaatgctgacatg 51600
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>gb|AC108138.6| Homo sapiens chromosome 18, clone RP11-235B21, complete sequence
          Length = 57830

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   ccagatgacttgcaagttttcttt 375
             |||| |||||||||||||||||||
Sbjct: 31452 ccagttgacttgcaagttttcttt 31429
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>emb|AL845441.7| Mouse DNA sequence from clone RP23-327I5 on chromosome 2, complete
             sequence
          Length = 153307

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   gttttctttattgcatctac 386
             ||||||||||||||||||||
Sbjct: 91130 gttttctttattgcatctac 91149
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>emb|AL121653.2|CNS01DS3 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 164M19 of
             library CITB_978_SKB from chromosome 2 of Homo sapiens
             (Human)
          Length = 138909

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   atagaaagcagaatagacat 475
             ||||||||||||||||||||
Sbjct: 71686 atagaaagcagaatagacat 71705


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,541,131
Number of Sequences: 3902068
Number of extensions: 7541131
Number of successful extensions: 140540
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140203
Number of HSP's gapped (non-prelim): 329
length of query: 726
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 703
effective length of database: 17,143,297,704
effective search space: 12051738285912
effective search space used: 12051738285912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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