Clone Information

BLAST Search Result

Clone Name	rbasd19i19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK100223.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	531	e-148
2	ref\|NM_193577.1\| Oryza sativa (japonica cultivar-group), predic...	529	e-147
3	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	274	3e-70
4	dbj\|AP003141.3\| Oryza sativa (japonica cultivar-group) genomic D...	274	3e-70
5	gb\|BT017548.1\| Zea mays clone EL01N0423H02.c mRNA sequence	180	3e-42
6	ref\|XM_741410.1\| Aspergillus fumigatus Af293 hypothetical protei...	46	0.12
7	gb\|AC008008.2\| Homo sapiens Xp22 PAC RPCI6-102 (Roswell Park Can...	44	0.47
8	dbj\|AP002782.3\| Homo sapiens genomic DNA, chromosome 11q clone:R...	44	0.47
9	gb\|BT013287.1\| Lycopersicon esculentum clone 134897R, mRNA sequence	42	1.9
10	gb\|AC023050.36\| Homo sapiens 12 BAC RP11-428G5 (Roswell Park Can...	42	1.9
11	gb\|AC126177.8\| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Can...	42	1.9
12	gb\|DQ284465.1\| Solanum tuberosum clone 096G02 3'-5' exonuclease ...	42	1.9
13	ref\|XM_632648.1\| Dictyostelium discoideum myosin II heavy chain ...	40	7.4
14	gb\|CP000096.1\| Pelodictyon luteolum DSM 273, complete genome	40	7.4
15	gb\|CP000099.1\| Methanosarcina barkeri str. fusaro chromosome 1, ...	40	7.4
16	gb\|AC161587.2\| Mus musculus BAC clone RP24-492G17 from chromosom...	40	7.4
17	gb\|AC136699.23\| Mus musculus chromosome 9, clone RP23-18E24, com...	40	7.4
18	ref\|XM_446615.1\| Candida glabrata CBS138, CAGL0G05830g partial mRNA	40	7.4
19	emb\|BX005268.26\| Zebrafish DNA sequence from clone DKEY-11L22 in...	40	7.4
20	emb\|BX510909.19\| Zebrafish DNA sequence from clone DKEY-195E19 i...	40	7.4
21	gb\|AC072054.10\| Homo sapiens BAC clone RP11-33P21 from 7, comple...	40	7.4
22	emb\|CR383684.7\| Zebrafish DNA sequence from clone DKEYP-69E1 in ...	40	7.4
23	emb\|AL596179.3\| Human DNA sequence from clone RP11-49A12 on chro...	40	7.4
24	emb\|AL512510.13\| Human DNA sequence from clone RP11-537P24 on ch...	40	7.4
25	emb\|AL096863.13\|HS1119I23 Human DNA sequence from clone RP5-1119...	40	7.4
26	emb\|CR380953.1\| Candida glabrata strain CBS138 chromosome G comp...	40	7.4
27	emb\|AL161982.1\|HSM802585 Homo sapiens genomic DNA; cDNA DKFZp761...	40	7.4
28	emb\|CR388146.9\| Zebrafish DNA sequence from clone DKEY-205F14 in...	40	7.4
29	emb\|CR293500.7\| Zebrafish DNA sequence from clone DKEY-211I20 in...	40	7.4
30	emb\|BX511020.10\| Zebrafish DNA sequence from clone RP71-9C18, co...	40	7.4
31	ref\|XM_698012.1\| PREDICTED: Danio rerio hypothetical protein LOC...	40	7.4
32	emb\|BX813317.11\| Mouse DNA sequence from clone RP24-297H17 on ch...	40	7.4
33	emb\|AL807749.21\| Zebrafish DNA sequence from clone CH211-197F20,...	40	7.4
34	emb\|BX324003.7\| Zebrafish DNA sequence from clone DKEY-81I14 in ...	40	7.4
35	emb\|BX276122.23\| Zebrafish DNA sequence from clone CH211-232H22,...	40	7.4
36	emb\|AL732504.23\| Mouse DNA sequence from clone RP23-177I18 on ch...	40	7.4
37	gb\|AC021889.29\| Homo sapiens 3 BAC RP11-554F8 (Roswell Park Canc...	40	7.4
38	emb\|BX640584.10\| Zebrafish DNA sequence from clone DKEY-78O7 in ...	40	7.4
39	gb\|AC153774.3\| Loxodonta africana clone VMRC15-554J14, complete ...	40	7.4
40	emb\|BX649616.5\| Zebrafish DNA sequence from clone CH211-165K17 i...	40	7.4
41	emb\|AL928917.9\| Zebrafish DNA sequence from clone CH211-103D12 i...	40	7.4
42	emb\|BX510947.20\| Zebrafish DNA sequence from clone DKEY-226F16 i...	40	7.4
43	emb\|CR792418.18\| Zebrafish DNA sequence from clone DKEY-59L11 in...	40	7.4
44	emb\|BX649283.16\| Zebrafish DNA sequence from clone DKEYP-86C4 in...	40	7.4
45	gb\|U22443.1\|EFU22443 Ellobius fuscocapillus sex-determining prot...	40	7.4
46	gb\|M14628.1\|DDIMYHC D.discoideum myosin heavy chain gene, comple...	40	7.4

>dbj|AK100223.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047H21, full
            insert sequence
          Length = 1245

 Score =  531 bits (268), Expect = e-148
 Identities = 403/448 (89%)
 Strand = Plus / Minus

                                                                        
Query: 91   ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 150
            ||||| || |||||||| ||||| |  ||||||||||| || ||||||||||||| ||||
Sbjct: 1082 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 1023

                                                                        
Query: 151  ggtccaatgatgaataccctatctggaggcccctttgcaccaccgatatggatttcaaca 210
            |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct: 1022 ggtccaatgatgaataccctgtctggaggtccctttgcaccaccaatatggatttcaaca 963

                                                                        
Query: 211  ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 270
            ||||||||| |||||||  |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 962  ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 903

                                                                        
Query: 271  tttccaggaggcacatctaagagcgaaaggatatccacttcaggaacacggacttcagct 330
            || |||||||||||||| ||||  || ||||||||||| |||||||||   || |||| |
Sbjct: 902  ttgccaggaggcacatccaagactgacaggatatccacctcaggaacataaacatcaggt 843

                                                                        
Query: 331  tcaatgtcatcagggacagttggaagaggtggccaatctgcctgctggttgtcatttatg 390
            ||||| |||||||||||||||||||||||||||||||| || | || |||||||||||||
Sbjct: 842  tcaatttcatcagggacagttggaagaggtggccaatccgcatacttgttgtcatttatg 783

                                                                        
Query: 391  caaaagcacctgcagtatagctcacttcgtactgccagacgccatgaggatactttgctt 450
            |||||||||||||||||||||||||| || |||| |||||||||| | ||||||||||||
Sbjct: 782  caaaagcacctgcagtatagctcactgcgaactgacagacgccataaagatactttgctt 723

                                                                        
Query: 451  aacttctccatcattttctcatgtatattgagaaggaagcgcacatcatctgttgctgct 510
            ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 722  aacttctccatcattttctcatgtatactgagaaggaagcggacatcatctgtggctgct 663

                                        
Query: 511  cgtatcatcatttcagacaagggcctat 538
            || |||||||||||||| || |||||||
Sbjct: 662  cgaatcatcatttcagataaaggcctat 635



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 17   agtaccacatgcatttctgtat 38
            ||||||||||||||||||||||
Sbjct: 1177 agtaccacatgcatttctgtat 1156

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>ref|NM_193577.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1209

 Score =  529 bits (267), Expect = e-147
 Identities = 396/439 (90%)
 Strand = Plus / Minus

                                                                        
Query: 100  tccagcattcggcccctcaggatagcctccgcctttctgacttccttcactggtccaatg 159
            |||||||| ||||| |  ||||||||||| || ||||||||||||| |||||||||||||
Sbjct: 1202 tccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcactggtccaatg 1143

                                                                        
Query: 160  atgaataccctatctggaggcccctttgcaccaccgatatggatttcaacattgcaagat 219
            ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 1142 atgaataccctgtctggaggtccctttgcaccaccaatatggatttcaacattgcaagat 1083

                                                                        
Query: 220  tctttcacggccattattgacgatccttttctgccaataacgcgtcccatttttccagga 279
             |||||||  |||||||||| |||||||||||||||||||| || |||||||| ||||||
Sbjct: 1082 gctttcacttccattattgatgatccttttctgccaataacacgccccattttgccagga 1023

                                                                        
Query: 280  ggcacatctaagagcgaaaggatatccacttcaggaacacggacttcagcttcaatgtca 339
            |||||||| ||||  || ||||||||||| |||||||||   || |||| |||||| |||
Sbjct: 1022 ggcacatccaagactgacaggatatccacctcaggaacataaacatcaggttcaatttca 963

                                                                        
Query: 340  tcagggacagttggaagaggtggccaatctgcctgctggttgtcatttatgcaaaagcac 399
            ||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||
Sbjct: 962  tcagggacagttggaagaggtggccaatccgcatacttgttgtcatttatgcaaaagcac 903

                                                                        
Query: 400  ctgcagtatagctcacttcgtactgccagacgccatgaggatactttgcttaacttctcc 459
            ||||||||||||||||| || |||| |||||||||| | |||||||||||||||||||||
Sbjct: 902  ctgcagtatagctcactgcgaactgacagacgccataaagatactttgcttaacttctcc 843

                                                                        
Query: 460  atcattttctcatgtatattgagaaggaagcgcacatcatctgttgctgctcgtatcatc 519
            |||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 842  atcattttctcatgtatactgagaaggaagcggacatcatctgtggctgctcgaatcatc 783

                               
Query: 520  atttcagacaagggcctat 538
            |||||||| || |||||||
Sbjct: 782  atttcagataaaggcctat 764

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  274 bits (138), Expect = 3e-70
 Identities = 183/198 (92%)
 Strand = Plus / Plus

                                                                            
Query: 341      cagggacagttggaagaggtggccaatctgcctgctggttgtcatttatgcaaaagcacc 400
                |||||||||||||||||||||||||||| || | || |||||||||||||||||||||||
Sbjct: 21696812 cagggacagttggaagaggtggccaatccgcatacttgttgtcatttatgcaaaagcacc 21696871

                                                                            
Query: 401      tgcagtatagctcacttcgtactgccagacgccatgaggatactttgcttaacttctcca 460
                |||||||||||||||| || |||| |||||||||| | ||||||||||||||||||||||
Sbjct: 21696872 tgcagtatagctcactgcgaactgacagacgccataaagatactttgcttaacttctcca 21696931

                                                                            
Query: 461      tcattttctcatgtatattgagaaggaagcgcacatcatctgttgctgctcgtatcatca 520
                ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 21696932 tcattttctcatgtatactgagaaggaagcggacatcatctgtggctgctcgaatcatca 21696991

                                  
Query: 521      tttcagacaagggcctat 538
                ||||||| || |||||||
Sbjct: 21696992 tttcagataaaggcctat 21697009



 Score =  119 bits (60), Expect = 1e-23
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                            
Query: 211      ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 270
                ||||||||| |||||||  |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 21696325 ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 21696384

                                                                
Query: 271      tttccaggaggcacatctaagagcgaaaggatatccacttcaggaaca 318
                || |||||||||||||| ||||  || ||||||||||| |||||||||
Sbjct: 21696385 ttgccaggaggcacatccaagactgacaggatatccacctcaggaaca 21696432



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                            
Query: 91       ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 150
                ||||| || |||||||| ||||| |  ||||||||||| || ||||||||||||| ||||
Sbjct: 21695275 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 21695334

                                  
Query: 151      ggtccaatgatgaatacc 168
                ||||||||||||||||||
Sbjct: 21695335 ggtccaatgatgaatacc 21695352



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                    
Query: 165      taccctatctggaggcccctttgcaccaccgatatggatttcaacattgcaa 216
                |||||| |||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct: 21696183 taccctgtctggaggtccctttgcaccaccaatatggatttcaacactgcaa 21696234



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 17       agtaccacatgcatttctgtat 38
                ||||||||||||||||||||||
Sbjct: 21695180 agtaccacatgcatttctgtat 21695201

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>dbj|AP003141.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0002B05
          Length = 141275

 Score =  274 bits (138), Expect = 3e-70
 Identities = 183/198 (92%)
 Strand = Plus / Plus

                                                                         
Query: 341   cagggacagttggaagaggtggccaatctgcctgctggttgtcatttatgcaaaagcacc 400
             |||||||||||||||||||||||||||| || | || |||||||||||||||||||||||
Sbjct: 48863 cagggacagttggaagaggtggccaatccgcatacttgttgtcatttatgcaaaagcacc 48922

                                                                         
Query: 401   tgcagtatagctcacttcgtactgccagacgccatgaggatactttgcttaacttctcca 460
             |||||||||||||||| || |||| |||||||||| | ||||||||||||||||||||||
Sbjct: 48923 tgcagtatagctcactgcgaactgacagacgccataaagatactttgcttaacttctcca 48982

                                                                         
Query: 461   tcattttctcatgtatattgagaaggaagcgcacatcatctgttgctgctcgtatcatca 520
             ||||||||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 48983 tcattttctcatgtatactgagaaggaagcggacatcatctgtggctgctcgaatcatca 49042

                               
Query: 521   tttcagacaagggcctat 538
             ||||||| || |||||||
Sbjct: 49043 tttcagataaaggcctat 49060



 Score =  119 bits (60), Expect = 1e-23
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                         
Query: 211   ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 270
             ||||||||| |||||||  |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 48376 ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 48435

                                                             
Query: 271   tttccaggaggcacatctaagagcgaaaggatatccacttcaggaaca 318
             || |||||||||||||| ||||  || ||||||||||| |||||||||
Sbjct: 48436 ttgccaggaggcacatccaagactgacaggatatccacctcaggaaca 48483



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                         
Query: 91    ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 150
             ||||| || |||||||| ||||| |  ||||||||||| || ||||||||||||| ||||
Sbjct: 47326 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 47385

                               
Query: 151   ggtccaatgatgaatacc 168
             ||||||||||||||||||
Sbjct: 47386 ggtccaatgatgaatacc 47403



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 165   taccctatctggaggcccctttgcaccaccgatatggatttcaacattgcaa 216
             |||||| |||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct: 48234 taccctgtctggaggtccctttgcaccaccaatatggatttcaacactgcaa 48285



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 17    agtaccacatgcatttctgtat 38
             ||||||||||||||||||||||
Sbjct: 47231 agtaccacatgcatttctgtat 47252

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>gb|BT017548.1| Zea mays clone EL01N0423H02.c mRNA sequence
          Length = 428

 Score =  180 bits (91), Expect = 3e-42
 Identities = 160/183 (87%)
 Strand = Plus / Minus

                                                                       
Query: 90  tctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcac 149
           |||||| || |||||||||||||| || | ||| ||||| || || |||||||| |||||
Sbjct: 193 tctctagaactccagcattcggcctctgaagatggcctcggctttcctgacttcattcac 134

                                                                       
Query: 150 tggtccaatgatgaataccctatctggaggcccctttgcaccaccgatatggatttcaac 209
           || |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 133 tgatccaatgatgaaaaccctatctggaggccccttagcaccaccaatatggatttcaac 74

                                                                       
Query: 210 attgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccat 269
            |||||||||||||||||  ||||||| |  || || |||||||||||||| ||||||||
Sbjct: 73  gttgcaagattctttcacaaccattatagttgacccctttctgccaataactcgtcccat 14

              
Query: 270 ttt 272
           |||
Sbjct: 13  ttt 11

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>ref|XM_741410.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g03170)
           partial mRNA
          Length = 564

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 244 ccttttctgccaataacgcgtcc 266
           |||||||||||||||||||||||
Sbjct: 139 ccttttctgccaataacgcgtcc 161

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>gb|AC008008.2| Homo sapiens Xp22 PAC RPCI6-102 (Roswell Park Cancer Institute Human
             PAC Library) complete sequence
          Length = 167257

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 463   attttctcatgtatattgagaa 484
             ||||||||||||||||||||||
Sbjct: 59256 attttctcatgtatattgagaa 59235

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>dbj|AP002782.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-660M18, complete
             sequences
          Length = 153078

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 21    ccacatgcatttctgtattcct 42
             ||||||||||||||||||||||
Sbjct: 24785 ccacatgcatttctgtattcct 24764

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>gb|BT013287.1| Lycopersicon esculentum clone 134897R, mRNA sequence
          Length = 1244

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 248 ttctgccaataacgcgtcccatttt 272
           ||||||||||||| |||||||||||
Sbjct: 889 ttctgccaataacacgtcccatttt 865

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>gb|AC023050.36| Homo sapiens 12 BAC RP11-428G5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186864

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 356    gaggtggccaatctgcctgct 376
              |||||||||||||||||||||
Sbjct: 135064 gaggtggccaatctgcctgct 135044

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>gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 131209

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 334    atgtcatcagggacagttgga 354
              |||||||||||||||||||||
Sbjct: 113158 atgtcatcagggacagttgga 113138

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>gb|DQ284465.1| Solanum tuberosum clone 096G02 3'-5' exonuclease domain-containing
           protein-like mRNA, complete cds
          Length = 1249

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 248 ttctgccaataacgcgtcccatttt 272
           ||||||||||||| |||||||||||
Sbjct: 867 ttctgccaataacacgtcccatttt 843

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>ref|XM_632648.1| Dictyostelium discoideum myosin II heavy chain (DDB0191444), partial
            mRNA
          Length = 6351

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 500  ctgttgctgctcgtatcatc 519
            ||||||||||||||||||||
Sbjct: 2366 ctgttgctgctcgtatcatc 2385

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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    tcacggccattattgacgat 243
              ||||||||||||||||||||
Sbjct: 939367 tcacggccattattgacgat 939386

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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 198     atggatttcaacattgcaag 217
               ||||||||||||||||||||
Sbjct: 4500152 atggatttcaacattgcaag 4500171

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>gb|AC161587.2| Mus musculus BAC clone RP24-492G17 from chromosome 9, complete sequence
          Length = 176237

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 461   tcattttctcatgtatattgagaa 484
             ||||||||||||||| ||||||||
Sbjct: 27965 tcattttctcatgtaaattgagaa 27942

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>gb|AC136699.23| Mus musculus chromosome 9, clone RP23-18E24, complete sequence
          Length = 229184

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 461    tcattttctcatgtatattgagaa 484
              ||||||||||||||| ||||||||
Sbjct: 186070 tcattttctcatgtaaattgagaa 186047

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>ref|XM_446615.1| Candida glabrata CBS138, CAGL0G05830g partial mRNA
          Length = 2532

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 453  cttctccatcattttctcat 472
            ||||||||||||||||||||
Sbjct: 1905 cttctccatcattttctcat 1886

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>emb|BX005268.26| Zebrafish DNA sequence from clone DKEY-11L22 in linkage group 14,
              complete sequence
          Length = 182719

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     caaaagtcctttctctaaaa 98
              ||||||||||||||||||||
Sbjct: 119686 caaaagtcctttctctaaaa 119705

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>emb|BX510909.19| Zebrafish DNA sequence from clone DKEY-195E19 in linkage group 5,
            complete sequence
          Length = 190731

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   caaaagtcctttctctaaaa 98
            ||||||||||||||||||||
Sbjct: 1964 caaaagtcctttctctaaaa 1983

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>gb|AC072054.10| Homo sapiens BAC clone RP11-33P21 from 7, complete sequence
          Length = 154037

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 443    ctttgcttaacttctccatc 462
              ||||||||||||||||||||
Sbjct: 117696 ctttgcttaacttctccatc 117715

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>emb|CR383684.7| Zebrafish DNA sequence from clone DKEYP-69E1 in linkage group 3,
             complete sequence
          Length = 111124

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   tgcaccaccgatatggattt 205
             ||||||||||||||||||||
Sbjct: 15731 tgcaccaccgatatggattt 15712

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>emb|AL596179.3| Human DNA sequence from clone RP11-49A12 on chromosome 6, complete
              sequence
          Length = 169159

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     ctttctctaaaattccagca 106
              ||||||||||||||||||||
Sbjct: 112313 ctttctctaaaattccagca 112294

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>emb|AL512510.13| Human DNA sequence from clone RP11-537P24 on chromosome 6 Contains a CpG
              island, complete sequence
          Length = 170970

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 23     acatgcatttctgtattccttgtgttca 50
              |||| |||||||||||||| ||||||||
Sbjct: 139743 acattcatttctgtattccctgtgttca 139716

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>emb|AL096863.13|HS1119I23 Human DNA sequence from clone RP5-1119I23 on chromosome 10, complete
             sequence
          Length = 98818

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   caacattgcaagattctttc 225
             ||||||||||||||||||||
Sbjct: 23506 caacattgcaagattctttc 23487

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>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence
          Length = 992211

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    cttctccatcattttctcat 472
              ||||||||||||||||||||
Sbjct: 562570 cttctccatcattttctcat 562589

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>emb|AL161982.1|HSM802585 Homo sapiens genomic DNA; cDNA DKFZp761J1224 (from clone
            DKFZp761J1224)
          Length = 5412

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 206  caacattgcaagattctttc 225
            ||||||||||||||||||||
Sbjct: 2048 caacattgcaagattctttc 2029

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>emb|CR388146.9| Zebrafish DNA sequence from clone DKEY-205F14 in linkage group 5,
             complete sequence
          Length = 19924

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    caaaagtcctttctctaaaa 98
             ||||||||||||||||||||
Sbjct: 19888 caaaagtcctttctctaaaa 19907

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>emb|CR293500.7| Zebrafish DNA sequence from clone DKEY-211I20 in linkage group 18,
              complete sequence
          Length = 164140

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     caaaagtcctttctctaaaa 98
              ||||||||||||||||||||
Sbjct: 136757 caaaagtcctttctctaaaa 136776

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>emb|BX511020.10| Zebrafish DNA sequence from clone RP71-9C18, complete sequence
          Length = 160830

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    caaaagtcctttctctaaaa 98
             ||||||||||||||||||||
Sbjct: 17818 caaaagtcctttctctaaaa 17799

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>ref|XM_698012.1| PREDICTED: Danio rerio hypothetical protein LOC555615 (LOC555615),
           mRNA
          Length = 1101

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 453 cttctccatcattttctcatgtat 476
           ||||||||||||| ||||||||||
Sbjct: 795 cttctccatcattgtctcatgtat 772

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>emb|BX813317.11| Mouse DNA sequence from clone RP24-297H17 on chromosome 2, complete
             sequence
          Length = 157571

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    caaaagtcctttctctaaaa 98
             ||||||||||||||||||||
Sbjct: 90135 caaaagtcctttctctaaaa 90116

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>emb|AL807749.21| Zebrafish DNA sequence from clone CH211-197F20, complete sequence
          Length = 198777

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   caaaagtcctttctctaaaa 98
            ||||||||||||||||||||
Sbjct: 9459 caaaagtcctttctctaaaa 9478

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>emb|BX324003.7| Zebrafish DNA sequence from clone DKEY-81I14 in linkage group 17,
              complete sequence
          Length = 247607

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     caaaagtcctttctctaaaa 98
              ||||||||||||||||||||
Sbjct: 151546 caaaagtcctttctctaaaa 151527

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>emb|BX276122.23| Zebrafish DNA sequence from clone CH211-232H22, complete sequence
          Length = 186714

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     caaaagtcctttctctaaaa 98
              ||||||||||||||||||||
Sbjct: 182384 caaaagtcctttctctaaaa 182403

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>emb|AL732504.23| Mouse DNA sequence from clone RP23-177I18 on chromosome 4, complete
             sequence
          Length = 192031

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   ggacagttggaagaggtggc 363
             ||||||||||||||||||||
Sbjct: 53883 ggacagttggaagaggtggc 53864

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>gb|AC021889.29| Homo sapiens 3 BAC RP11-554F8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 178752

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    attccttgtgttcaaaagat 56
             ||||||||||||||||||||
Sbjct: 60006 attccttgtgttcaaaagat 60025

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>emb|BX640584.10| Zebrafish DNA sequence from clone DKEY-78O7 in linkage group 14, complete
              sequence
          Length = 265520

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     caaaagtcctttctctaaaa 98
              ||||||||||||||||||||
Sbjct: 103155 caaaagtcctttctctaaaa 103136

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>gb|AC153774.3| Loxodonta africana clone VMRC15-554J14, complete sequence
          Length = 136822

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    ttcagcttcaatgtcatcag 343
              ||||||||||||||||||||
Sbjct: 133796 ttcagcttcaatgtcatcag 133815

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>emb|BX649616.5| Zebrafish DNA sequence from clone CH211-165K17 in linkage group 18,
              complete sequence
          Length = 131062

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     caaaagtcctttctctaaaa 98
              ||||||||||||||||||||
Sbjct: 117386 caaaagtcctttctctaaaa 117405

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>emb|AL928917.9| Zebrafish DNA sequence from clone CH211-103D12 in linkage group 1,
             complete sequence
          Length = 176961

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 453   cttctccatcattttctcatgtat 476
             ||||||||||||| ||||||||||
Sbjct: 83334 cttctccatcattgtctcatgtat 83311

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>emb|BX510947.20| Zebrafish DNA sequence from clone DKEY-226F16 in linkage group 4,
             complete sequence
          Length = 125275

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    caaaagtcctttctctaaaa 98
             ||||||||||||||||||||
Sbjct: 21736 caaaagtcctttctctaaaa 21717

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>emb|CR792418.18| Zebrafish DNA sequence from clone DKEY-59L11 in linkage group 4, complete
              sequence
          Length = 263674

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     caaaagtcctttctctaaaa 98
              ||||||||||||||||||||
Sbjct: 154217 caaaagtcctttctctaaaa 154236

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>emb|BX649283.16| Zebrafish DNA sequence from clone DKEYP-86C4 in linkage group 14,
             complete sequence
          Length = 193551

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    caaaagtcctttctctaaaa 98
             ||||||||||||||||||||
Sbjct: 14342 caaaagtcctttctctaaaa 14323

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>gb|U22443.1|EFU22443 Ellobius fuscocapillus sex-determining protein (Sry) gene, partial
           cds
          Length = 153

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 ccatttttccaggaggcaca 285
           ||||||||||||||||||||
Sbjct: 121 ccatttttccaggaggcaca 140

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>gb|M14628.1|DDIMYHC D.discoideum myosin heavy chain gene, complete cds
          Length = 6681

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 500  ctgttgctgctcgtatcatc 519
            ||||||||||||||||||||
Sbjct: 2435 ctgttgctgctcgtatcatc 2454


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,179,355
Number of Sequences: 3902068
Number of extensions: 5179355
Number of successful extensions: 98246
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98079
Number of HSP's gapped (non-prelim): 167
length of query: 545
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 522
effective length of database: 17,143,297,704
effective search space: 8948801401488
effective search space used: 8948801401488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result