ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19i17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120222.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 8e-22
2gb|AY106680.1| Zea mays PCO092004 mRNA sequence 105 2e-19
3ref|XM_478998.1| Oryza sativa (japonica cultivar-group), mRNA 74 7e-10
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 74 7e-10
5dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic D... 74 7e-10
6ref|NM_120860.2| Arabidopsis thaliana actin binding AT5G07780 mR... 56 2e-04
7dbj|AK221526.1| Arabidopsis thaliana mRNA for putative protein, ... 56 2e-04
8dbj|AB005249.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 56 2e-04
9gb|AC093809.3| Homo sapiens BAC clone RP11-352E6 from 4, complet... 44 0.62
10gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 44 0.62
11ref|NM_115318.2| Arabidopsis thaliana GCN5 AT3G54610 (GCN5) mRNA... 42 2.4
12gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome 42 2.4
13gb|AY714780.1| Homo sapiens carboxypeptidase B2 (plasma, carboxy... 42 2.4
14gb|AC164102.2| Mus musculus BAC clone RP23-7E23 from chromosome ... 42 2.4
15emb|AL160281.17| Human DNA sequence from clone RP11-21M7 on chro... 42 2.4
16emb|AL157758.10| Human DNA sequence from clone RP11-106H11 on ch... 42 2.4
17gb|BT008909.1| Arabidopsis thaliana At3g54610 mRNA, complete cds 42 2.4
18emb|AL138656.2|ATT14E10 Arabidopsis thaliana DNA chromosome 3, B... 42 2.4
19gb|AE010232.1| Pyrococcus furiosus DSM 3638, section 107 of 173 ... 42 2.4
20gb|AC153762.3| Loxodonta africana clone VMRC15-159I7, complete s... 42 2.4
21gb|AF338771.1|AF338771 Arabidopsis thaliana histone acetyltransf... 42 2.4
22gb|AF338768.1|AF338768 Arabidopsis thaliana histone acetyltransf... 42 2.4
23dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
24dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
25dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.4
26dbj|AK101726.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.4
27emb|AL445594.3|CNS07ED4 Human chromosome 14 DNA sequence BAC R-7... 42 2.4
28gb|BT002057.1| Arabidopsis thaliana Expressed protein (At3g54610... 42 2.4
29gb|AC153016.2| Mus musculus BAC clone RP23-182K18 from 13, compl... 42 2.4
30gb|AC156981.13| Mus musculus chromosome 18, clone RP23-145E3, co... 42 2.4
31emb|AL352981.4|CNS05TC0 Human chromosome 14 DNA sequence BAC R-1... 42 2.4
32gb|AC007470.12| Drosophila melanogaster clone BACR14H22, complet... 40 9.7
33gb|AC167466.6| Mus musculus chromosome 7, clone RP24-220N8, comp... 40 9.7
34ref|XM_529473.1| PREDICTED: Pan troglodytes LOC451768 (LOC451768... 40 9.7
35ref|NM_172414.1| Mus musculus RIKEN cDNA 2810002I04 gene (281000... 40 9.7
36gb|AC004650.1| Homo sapiens chromosome 5, P1 clone 207c2 (LBNL H... 40 9.7
37gb|AC163653.5| Mus musculus BAC clone RP24-334B8 from chromosome... 40 9.7
38ref|NM_031019.1| Rattus norvegicus corticotropin releasing hormo... 40 9.7
39gb|AC121533.6| Mus musculus chromosome 9, clone RP24-555P22, com... 40 9.7
40gb|AC159244.4| Mus musculus BAC clone RP24-309L4 from chromosome... 40 9.7
41gb|AC132684.3| Mus musculus BAC clone RP23-277L20 from 9, comple... 40 9.7
42ref|XM_651616.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 9.7
43gb|AC004142.2| Homo sapiens BAC clone CTB-118D7 from 7, complete... 40 9.7
44gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, co... 40 9.7
45gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, co... 40 9.7
46emb|BX571662.1| Wolinella succinogenes, complete genome; segment... 40 9.7
47emb|AL591146.21| Mouse DNA sequence from clone RP23-252E4 on chr... 40 9.7
48gb|AC090233.16| Homo sapiens chromosome 18, clone RP11-675P24, c... 40 9.7
49emb|BX927227.11| Zebrafish DNA sequence from clone CH211-127D13 ... 40 9.7
50gb|AC105315.5| Homo sapiens BAC clone RP11-376M9 from 4, complet... 40 9.7
51dbj|AK036602.1| Mus musculus adult male bone cDNA, RIKEN full-le... 40 9.7
52gb|AC093199.1| Drosophila melanogaster, chromosome 2L, region 33... 40 9.7
53gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosom... 40 9.7
54dbj|AK032455.1| Mus musculus adult male olfactory brain cDNA, RI... 40 9.7
55dbj|AK033213.1| Mus musculus 15 days embryo male testis cDNA, RI... 40 9.7
56emb|BX284646.4| Zebrafish DNA sequence from clone CH211-49J11 in... 40 9.7
57gb|U18795.1|SCE9669 Saccharomyces cerevisiae chromosome V cosmid... 40 9.7
58emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 9.7
59emb|X03036.1|RNCRFR Rat mRNA for corticotropin-releasing factor ... 40 9.7
60gb|AE003633.3| Drosophila melanogaster chromosome 2L, section 42... 40 9.7
61gb|AY713445.1| Feline immunodeficiency virus clone pOma3, comple... 40 9.7
62gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 40 9.7
63gb|BC049940.1| Mus musculus RIKEN cDNA 2810002I04 gene, mRNA (cD... 40 9.7
64gb|U56928.1|FIU56928 Feline immunodeficiency virus strain FIV-Om... 40 9.7
65emb|AL845332.11| Mouse DNA sequence from clone RP23-326D18 on ch... 40 9.7
66gb|M54987.1|RATCRH Rat corticotropin releasing hormone (CRH) gen... 40 9.7 
>dbj|AK120222.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041H24, full
            insert sequence
          Length = 2812

 Score =  113 bits (57), Expect = 8e-22
 Identities = 211/261 (80%), Gaps = 6/261 (2%)
 Strand = Plus / Minus

                                                                        
Query: 448  gcagggcatgcatttgccccgcaggcagatcaaaatcacaacactggagttggtcccaca 507
            ||||| |||||||| |||| ||| |||||||| || | |||||   |||||||||    |
Sbjct: 2326 gcaggtcatgcattcgcccagcatgcagatcataagcgcaacaacagagttggtcgtgga 2267

                                                                        
Query: 508  gatcatccaccatcttttcctcgcctacttgtagatcttgttttc---tctaacgtttgt 564
            ||||| ||  ||||||||||||| || |||| || |||||||||    |||  |||||||
Sbjct: 2266 gatcaacctacatcttttcctcgtctgcttgcagctcttgttttagtatctggcgtttgt 2207

                                                                        
Query: 565  tttgcttgtcggcttggattcgatgcttttgagtcatttttactggccaactgagcattc 624
            ||  |||| ||||||||||| |||| ||| |||||||||||||| |||||||| || || 
Sbjct: 2206 ttcacttgccggcttggatttgatggtttagagtcatttttactagccaactgtgcttt- 2148

                                                                        
Query: 625  ttagacttctctgcttctgcctctttttgagcttttttcttctcaagctcggcttgcttg 684
              |||||| ||||||||||||||||||| |||  ||||||| || ||||| |||||||||
Sbjct: 2147 --agacttttctgcttctgcctctttttcagcccttttcttatcgagctcagcttgcttg 2090

                                 
Query: 685  atattctcctcatgtgctttc 705
               ||||| ||||||||||||
Sbjct: 2089 cggttctcttcatgtgctttc 2069



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 74   cctaccctttccctactcctatttgtacaatt 105
            ||||||||||||||  ||||||||||||||||
Sbjct: 2675 cctaccctttccctgttcctatttgtacaatt 2644
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>gb|AY106680.1| Zea mays PCO092004 mRNA sequence
          Length = 910

 Score =  105 bits (53), Expect = 2e-19
 Identities = 116/137 (84%)
 Strand = Plus / Minus

                                                                       
Query: 568 gcttgtcggcttggattcgatgcttttgagtcatttttactggccaactgagcattctta 627
           ||||||||||||||||| |||| ||| |||| |||||| |  |  || || || || || 
Sbjct: 199 gcttgtcggcttggatttgatgatttagagtgatttttgccagttaattgtgcgtttttg 140

                                                                       
Query: 628 gacttctctgcttctgcctctttttgagcttttttcttctcaagctcggcttgcttgata 687
           | ||||||||||||||||||||||| |||||||||||||||||| || |||||||| |  
Sbjct: 139 gccttctctgcttctgcctctttttcagcttttttcttctcaagttcagcttgcttcagg 80

                            
Query: 688 ttctcctcatgtgcttt 704
           |||||||||||||||||
Sbjct: 79  ttctcctcatgtgcttt 63
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>ref|XM_478998.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4884

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                        
Query: 625  ttagacttctctgcttctgcctctttttgagcttttttcttctcaagctcggcttgcttg 684
            |||||||| ||||||||||||||||||| |||  ||||||| || ||||| |||||||||
Sbjct: 4769 ttagacttttctgcttctgcctctttttcagcccttttcttatcgagctcagcttgcttg 4710

                                 
Query: 685  atattctcctcatgtgctttc 705
               ||||| ||||||||||||
Sbjct: 4709 cggttctcttcatgtgctttc 4689
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                            
Query: 625      ttagacttctctgcttctgcctctttttgagcttttttcttctcaagctcggcttgcttg 684
                |||||||| ||||||||||||||||||| |||  ||||||| || ||||| |||||||||
Sbjct: 24213734 ttagacttttctgcttctgcctctttttcagcccttttcttatcgagctcagcttgcttg 24213793

                                     
Query: 685      atattctcctcatgtgctttc 705
                   ||||| ||||||||||||
Sbjct: 24213794 cggttctcttcatgtgctttc 24213814



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 74       cctaccctttccctactcctatttgtacaatt 105
                ||||||||||||||  ||||||||||||||||
Sbjct: 24213036 cctaccctttccctgttcctatttgtacaatt 24213067



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 122/155 (78%), Gaps = 3/155 (1%)
 Strand = Plus / Plus

                                                                            
Query: 448      gcagggcatgcatttgccccgcaggcagatcaaaatcacaacactggagttggtcccaca 507
                ||||| |||||||| |||| ||| |||||||| || | |||||   |||||||||    |
Sbjct: 24213472 gcaggtcatgcattcgcccagcatgcagatcataagcgcaacaacagagttggtcgtgga 24213531

                                                                            
Query: 508      gatcatccaccatcttttcctcgcctacttgtagatcttgttt---tctctaacgtttgt 564
                ||||| ||  ||||||||||||| || |||| || ||||||||   | |||  |||||||
Sbjct: 24213532 gatcaacctacatcttttcctcgtctgcttgcagctcttgttttagtatctggcgtttgt 24213591

                                                   
Query: 565      tttgcttgtcggcttggattcgatgcttttgagtc 599
                ||  |||| ||||||||||| |||| ||| |||||
Sbjct: 24213592 ttcacttgccggcttggatttgatggtttagagtc 24213626
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>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453E05
          Length = 137364

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 70/81 (86%)
 Strand = Plus / Plus

                                                                         
Query: 625   ttagacttctctgcttctgcctctttttgagcttttttcttctcaagctcggcttgcttg 684
             |||||||| ||||||||||||||||||| |||  ||||||| || ||||| |||||||||
Sbjct: 25285 ttagacttttctgcttctgcctctttttcagcccttttcttatcgagctcagcttgcttg 25344

                                  
Query: 685   atattctcctcatgtgctttc 705
                ||||| ||||||||||||
Sbjct: 25345 cggttctcttcatgtgctttc 25365



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 74    cctaccctttccctactcctatttgtacaatt 105
             ||||||||||||||  ||||||||||||||||
Sbjct: 24587 cctaccctttccctgttcctatttgtacaatt 24618



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 122/155 (78%), Gaps = 3/155 (1%)
 Strand = Plus / Plus

                                                                         
Query: 448   gcagggcatgcatttgccccgcaggcagatcaaaatcacaacactggagttggtcccaca 507
             ||||| |||||||| |||| ||| |||||||| || | |||||   |||||||||    |
Sbjct: 25023 gcaggtcatgcattcgcccagcatgcagatcataagcgcaacaacagagttggtcgtgga 25082

                                                                         
Query: 508   gatcatccaccatcttttcctcgcctacttgtagatcttgttt---tctctaacgtttgt 564
             ||||| ||  ||||||||||||| || |||| || ||||||||   | |||  |||||||
Sbjct: 25083 gatcaacctacatcttttcctcgtctgcttgcagctcttgttttagtatctggcgtttgt 25142

                                                
Query: 565   tttgcttgtcggcttggattcgatgcttttgagtc 599
             ||  |||| ||||||||||| |||| ||| |||||
Sbjct: 25143 ttcacttgccggcttggatttgatggtttagagtc 25177
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>ref|NM_120860.2| Arabidopsis thaliana actin binding AT5G07780 mRNA, complete cds
          Length = 1590

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 654  agcttttttcttctcaagctcggcttgcttgatattctcctcatgtgctttc 705
            |||||| |||||||| | ||| |||||||||| |||||| ||||||||||||
Sbjct: 1362 agctttcttcttctccaactccgcttgcttgacattctcttcatgtgctttc 1311
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>dbj|AK221526.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone:
            RAFL07-66-O15
          Length = 1805

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 654  agcttttttcttctcaagctcggcttgcttgatattctcctcatgtgctttc 705
            |||||| |||||||| | ||| |||||||||| |||||| ||||||||||||
Sbjct: 1555 agctttcttcttctccaactccgcttgcttgacattctcttcatgtgctttc 1504
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>dbj|AB005249.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXM12
          Length = 83599

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 654  agcttttttcttctcaagctcggcttgcttgatattctcctcatgtgctttc 705
            |||||| |||||||| | ||| |||||||||| |||||| ||||||||||||
Sbjct: 4921 agctttcttcttctccaactccgcttgcttgacattctcttcatgtgctttc 4870
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>gb|AC093809.3| Homo sapiens BAC clone RP11-352E6 from 4, complete sequence
          Length = 162214

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 386  ccttctccttttctttgccttc 407
            ||||||||||||||||||||||
Sbjct: 5805 ccttctccttttctttgccttc 5784
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 44.1 bits (22), Expect = 0.62
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 400     ttgccttcaaagacgcggtgcg 421
               ||||||||||||||||||||||
Sbjct: 1771177 ttgccttcaaagacgcggtgcg 1771156
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>ref|NM_115318.2| Arabidopsis thaliana GCN5 AT3G54610 (GCN5) mRNA, complete cds
          Length = 2018

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 503 ccacagatcatccaccatcttttcc 527
           |||||||| ||||||||||||||||
Sbjct: 526 ccacagatgatccaccatcttttcc 502
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>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome
          Length = 1111496

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 650    tttgagcttttttcttctcaa 670
              |||||||||||||||||||||
Sbjct: 338840 tttgagcttttttcttctcaa 338860
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>gb|AY714780.1| Homo sapiens carboxypeptidase B2 (plasma, carboxypeptidase U) (CPB2)
             gene, complete cds
          Length = 55829

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 651   ttgagcttttttcttctcaag 671
             |||||||||||||||||||||
Sbjct: 49733 ttgagcttttttcttctcaag 49753
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>gb|AC164102.2| Mus musculus BAC clone RP23-7E23 from chromosome 13, complete sequence
          Length = 234552

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 615    ctgagcattcttagacttctctgct 639
              ||||||||| |||||||||||||||
Sbjct: 224413 ctgagcattattagacttctctgct 224389
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>emb|AL160281.17| Human DNA sequence from clone RP11-21M7 on chromosome 1 Contains a
             novel gene, the 5' end of the RASAL2 gene for RAS protein
             activator like 2 and a CpG island, complete sequence
          Length = 180954

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 185   agcacaggtaagaaaaaagaa 205
             |||||||||||||||||||||
Sbjct: 74433 agcacaggtaagaaaaaagaa 74413
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>emb|AL157758.10| Human DNA sequence from clone RP11-106H11 on chromosome 13 Contains the
             5' end of a novel gene (contains FLJ31860 and KIAA0853),
             possible ortholog of mouse 3110050K21Rik protein, the 3'
             end of the CPB2 gene for carboxypeptidase B2 (plasma,
             carboxypeptidase U) and a CpG island, complete sequence
          Length = 58097

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 651   ttgagcttttttcttctcaag 671
             |||||||||||||||||||||
Sbjct: 43732 ttgagcttttttcttctcaag 43712
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>gb|BT008909.1| Arabidopsis thaliana At3g54610 mRNA, complete cds
          Length = 1707

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 503 ccacagatcatccaccatcttttcc 527
           |||||||| ||||||||||||||||
Sbjct: 493 ccacagatgatccaccatcttttcc 469
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>emb|AL138656.2|ATT14E10 Arabidopsis thaliana DNA chromosome 3, BAC clone T14E10
          Length = 94911

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 503   ccacagatcatccaccatcttttcc 527
             |||||||| ||||||||||||||||
Sbjct: 82813 ccacagatgatccaccatcttttcc 82789
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>gb|AE010232.1| Pyrococcus furiosus DSM 3638, section 107 of 173 of the complete genome
          Length = 13800

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 385   gccttctccttttctttgccttcaa 409
             ||||||||||| |||||||||||||
Sbjct: 13564 gccttctccttatctttgccttcaa 13588
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>gb|AC153762.3| Loxodonta africana clone VMRC15-159I7, complete sequence
          Length = 140444

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 388   ttctccttttctttgccttca 408
             |||||||||||||||||||||
Sbjct: 40988 ttctccttttctttgccttca 41008
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>gb|AF338771.1|AF338771 Arabidopsis thaliana histone acetyltransferase GCN5 (GCN5) gene,
            complete cds
          Length = 4622

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 503  ccacagatcatccaccatcttttcc 527
            |||||||| ||||||||||||||||
Sbjct: 1115 ccacagatgatccaccatcttttcc 1091
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>gb|AF338768.1|AF338768 Arabidopsis thaliana histone acetyltransferase GCN5 (GCN5) mRNA,
           complete cds
          Length = 1930

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 503 ccacagatcatccaccatcttttcc 527
           |||||||| ||||||||||||||||
Sbjct: 510 ccacagatgatccaccatcttttcc 486
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 327     gtactgtacaattgcttaaatgtgt 351
               |||||||||||||||| ||||||||
Sbjct: 2417702 gtactgtacaattgctcaaatgtgt 2417678
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>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0024G09
          Length = 175565

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 327    gtactgtacaattgcttaaatgtgt 351
              |||||||||||||||| ||||||||
Sbjct: 146752 gtactgtacaattgctcaaatgtgt 146728
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>dbj|AB009052.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNF13
          Length = 85992

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 645   ctctttttgagcttttttctt 665
             |||||||||||||||||||||
Sbjct: 14774 ctctttttgagcttttttctt 14754
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>dbj|AK101726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061D12, full
            insert sequence
          Length = 2182

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 327  gtactgtacaattgcttaaatgtgt 351
            |||||||||||||||| ||||||||
Sbjct: 2059 gtactgtacaattgctcaaatgtgt 2035
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>emb|AL445594.3|CNS07ED4 Human chromosome 14 DNA sequence BAC R-74H1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 171409

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 388    ttctccttttctttgccttca 408
              |||||||||||||||||||||
Sbjct: 117644 ttctccttttctttgccttca 117664
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>gb|BT002057.1| Arabidopsis thaliana Expressed protein (At3g54610) mRNA, complete
           cds
          Length = 1990

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 503 ccacagatcatccaccatcttttcc 527
           |||||||| ||||||||||||||||
Sbjct: 513 ccacagatgatccaccatcttttcc 489
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>gb|AC153016.2| Mus musculus BAC clone RP23-182K18 from 13, complete sequence
          Length = 224420

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 615    ctgagcattcttagacttctctgct 639
              ||||||||| |||||||||||||||
Sbjct: 129022 ctgagcattattagacttctctgct 128998
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>gb|AC156981.13| Mus musculus chromosome 18, clone RP23-145E3, complete sequence
          Length = 210762

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 197   aaaaaagaatgaagttagctt 217
             |||||||||||||||||||||
Sbjct: 89266 aaaaaagaatgaagttagctt 89286
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>emb|AL352981.4|CNS05TC0 Human chromosome 14 DNA sequence BAC R-15E14 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158214

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 388   ttctccttttctttgccttca 408
             |||||||||||||||||||||
Sbjct: 35848 ttctccttttctttgccttca 35868
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>gb|AC007470.12| Drosophila melanogaster clone BACR14H22, complete sequence
          Length = 175977

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 628   gacttctctgcttctgcctc 647
             ||||||||||||||||||||
Sbjct: 32085 gacttctctgcttctgcctc 32104
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>gb|AC167466.6| Mus musculus chromosome 7, clone RP24-220N8, complete sequence
          Length = 163721

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   aagaacaggtaacatagcac 189
             ||||||||||||||||||||
Sbjct: 97020 aagaacaggtaacatagcac 97001
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>ref|XM_529473.1| PREDICTED: Pan troglodytes LOC451768 (LOC451768), mRNA
          Length = 511

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 251 cactgaacacctactggccg 270
           ||||||||||||||||||||
Sbjct: 118 cactgaacacctactggccg 99
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>ref|NM_172414.1| Mus musculus RIKEN cDNA 2810002I04 gene (2810002I04Rik), mRNA
          Length = 4421

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 459  atttgccccgcaggcagatc 478
            ||||||||||||||||||||
Sbjct: 1861 atttgccccgcaggcagatc 1842
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>gb|AC004650.1| Homo sapiens chromosome 5, P1 clone 207c2 (LBNL H33), complete sequence
          Length = 79635

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   aagaaaaaagaatgaagtta 213
             ||||||||||||||||||||
Sbjct: 28663 aagaaaaaagaatgaagtta 28682
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>gb|AC163653.5| Mus musculus BAC clone RP24-334B8 from chromosome 14, complete sequence
          Length = 201678

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 614    actgagcattcttagacttc 633
              ||||||||||||||||||||
Sbjct: 145653 actgagcattcttagacttc 145634
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>ref|NM_031019.1| Rattus norvegicus corticotropin releasing hormone (Crh), mRNA
          Length = 1197

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 387 cttctccttttctttgcctt 406
           ||||||||||||||||||||
Sbjct: 66  cttctccttttctttgcctt 47
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>gb|AC121533.6| Mus musculus chromosome 9, clone RP24-555P22, complete sequence
          Length = 175009

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 448    gcagggcatgcatttgccccgcag 471
              |||||||| |||||||||||||||
Sbjct: 105880 gcagggcaagcatttgccccgcag 105857
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>gb|AC159244.4| Mus musculus BAC clone RP24-309L4 from chromosome 12, complete
            sequence
          Length = 216500

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 459  atttgccccgcaggcagatc 478
            ||||||||||||||||||||
Sbjct: 3679 atttgccccgcaggcagatc 3660
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>gb|AC132684.3| Mus musculus BAC clone RP23-277L20 from 9, complete sequence
          Length = 182976

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 448   gcagggcatgcatttgccccgcag 471
             |||||||| |||||||||||||||
Sbjct: 87470 gcagggcaagcatttgccccgcag 87493
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>ref|XM_651616.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (9.t00018)
           partial mRNA
          Length = 1128

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 645 ctctttttgagcttttttcttctc 668
           |||||||| |||||||||||||||
Sbjct: 999 ctctttttcagcttttttcttctc 976
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>gb|AC004142.2| Homo sapiens BAC clone CTB-118D7 from 7, complete sequence
          Length = 166126

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    catgccagacacacattctt 69
             ||||||||||||||||||||
Sbjct: 13759 catgccagacacacattctt 13778
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>gb|AC102432.9| Mus musculus chromosome 19, clone RP24-114A21, complete sequence
          Length = 199240

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   aagaacaggtaacatagcac 189
             ||||||||||||||||||||
Sbjct: 16611 aagaacaggtaacatagcac 16630
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>gb|AC161413.5| Mus musculus chromosome 19, clone RP23-106D17, complete sequence
          Length = 215356

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    aagaacaggtaacatagcac 189
              ||||||||||||||||||||
Sbjct: 114457 aagaacaggtaacatagcac 114438
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>emb|BX571662.1| Wolinella succinogenes, complete genome; segment 6/7
          Length = 349859

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 644    cctctttttgagcttttttc 663
              ||||||||||||||||||||
Sbjct: 272379 cctctttttgagcttttttc 272398
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>emb|AL591146.21| Mouse DNA sequence from clone RP23-252E4 on chromosome 11 Contains the 3'
              end of the Myo1d gene for myosin ID, two novel genes, the
              Cdk5r gene for cyclin-dependent kinase 5 regulatory subunit
              (p35), the Psmd11 gene for non-ATPase proteasome (prosome,
              macropain) 26S subunit 11, the Zfp207 gene for zinc finger
              protein 207 and the 3' end of the Rhbdl4 gene for rhomboid
              veinlet-like 4 (Drosophila), complete sequence
          Length = 195208

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 342    ttaaatgtgttctacttccc 361
              ||||||||||||||||||||
Sbjct: 142893 ttaaatgtgttctacttccc 142874
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>gb|AC090233.16| Homo sapiens chromosome 18, clone RP11-675P24, complete sequence
          Length = 167895

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 232   tacatcagccagatgttggc 251
             ||||||||||||||||||||
Sbjct: 42225 tacatcagccagatgttggc 42244
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>emb|BX927227.11| Zebrafish DNA sequence from clone CH211-127D13 in linkage group 5,
              complete sequence
          Length = 135384

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 683    tgatattctcctcatgtgct 702
              ||||||||||||||||||||
Sbjct: 128339 tgatattctcctcatgtgct 128320
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>gb|AC105315.5| Homo sapiens BAC clone RP11-376M9 from 4, complete sequence
          Length = 17816

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 37    tcatatttactaccatgccagacacacattct 68
             ||||||| |||||||||||||| ||| |||||
Sbjct: 14366 tcatattaactaccatgccagagacaaattct 14335
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>dbj|AK036602.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
            library, clone:9830139E23 product:hypothetical protein,
            full insert sequence
          Length = 4421

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 459  atttgccccgcaggcagatc 478
            ||||||||||||||||||||
Sbjct: 1861 atttgccccgcaggcagatc 1842
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>gb|AC093199.1| Drosophila melanogaster, chromosome 2L, region 33A-33A, BAC clone
              BACR05B13, complete sequence
          Length = 168641

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 628    gacttctctgcttctgcctc 647
              ||||||||||||||||||||
Sbjct: 116677 gacttctctgcttctgcctc 116696
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>gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosome 12, complete sequence
          Length = 222209

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 459    atttgccccgcaggcagatc 478
              ||||||||||||||||||||
Sbjct: 205338 atttgccccgcaggcagatc 205319
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>dbj|AK032455.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430549M02 product:hypothetical
            protein, full insert sequence
          Length = 2441

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 459  atttgccccgcaggcagatc 478
            ||||||||||||||||||||
Sbjct: 1827 atttgccccgcaggcagatc 1808
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>dbj|AK033213.1| Mus musculus 15 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:8030464M21 product:hypothetical
            protein, full insert sequence
          Length = 2364

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 459  atttgccccgcaggcagatc 478
            ||||||||||||||||||||
Sbjct: 1818 atttgccccgcaggcagatc 1799
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>emb|BX284646.4| Zebrafish DNA sequence from clone CH211-49J11 in linkage group 5,
             complete sequence
          Length = 182774

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 683   tgatattctcctcatgtgct 702
             ||||||||||||||||||||
Sbjct: 58940 tgatattctcctcatgtgct 58959
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>gb|U18795.1|SCE9669 Saccharomyces cerevisiae chromosome V cosmids 9669, 8334, 8199, and
             lambda clone 1160
          Length = 50849

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   gtaagaaaaaagaatgaagt 211
             ||||||||||||||||||||
Sbjct: 49932 gtaagaaaaaagaatgaagt 49951
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 665    tctcaagctcggcttgcttg 684
              ||||||||||||||||||||
Sbjct: 552964 tctcaagctcggcttgcttg 552945
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>emb|X03036.1|RNCRFR Rat mRNA for corticotropin-releasing factor precursor (prepro-CRF)
          Length = 1195

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 387 cttctccttttctttgcctt 406
           ||||||||||||||||||||
Sbjct: 64  cttctccttttctttgcctt 45
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>gb|AE003633.3| Drosophila melanogaster chromosome 2L, section 42 of 83 of the complete
              sequence
          Length = 266175

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 628    gacttctctgcttctgcctc 647
              ||||||||||||||||||||
Sbjct: 203867 gacttctctgcttctgcctc 203848
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>gb|AY713445.1| Feline immunodeficiency virus clone pOma3, complete genome
          Length = 9751

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 180 aacatagcacaggtaagaaa 199
           ||||||||||||||||||||
Sbjct: 850 aacatagcacaggtaagaaa 869
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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 639     ttctgcctctttttgagctt 658
               ||||||||||||||||||||
Sbjct: 1627618 ttctgcctctttttgagctt 1627637
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>gb|BC049940.1| Mus musculus RIKEN cDNA 2810002I04 gene, mRNA (cDNA clone MGC:54815
            IMAGE:6305959), complete cds
          Length = 2024

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 459  atttgccccgcaggcagatc 478
            ||||||||||||||||||||
Sbjct: 1837 atttgccccgcaggcagatc 1818
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>gb|U56928.1|FIU56928 Feline immunodeficiency virus strain FIV-Oma proviral DNA, complete
           sequence
          Length = 9745

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 180 aacatagcacaggtaagaaa 199
           ||||||||||||||||||||
Sbjct: 844 aacatagcacaggtaagaaa 863
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>emb|AL845332.11| Mouse DNA sequence from clone RP23-326D18 on chromosome 2, complete
             sequence
          Length = 200453

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    accatgccagacacacattc 67
             ||||||||||||||||||||
Sbjct: 33170 accatgccagacacacattc 33151
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>gb|M54987.1|RATCRH Rat corticotropin releasing hormone (CRH) gene, complete cds
          Length = 2432

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 387 cttctccttttctttgcctt 406
           ||||||||||||||||||||
Sbjct: 402 cttctccttttctttgcctt 383


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,284,865
Number of Sequences: 3902068
Number of extensions: 7284865
Number of successful extensions: 161172
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 160879
Number of HSP's gapped (non-prelim): 292
length of query: 705
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 682
effective length of database: 17,143,297,704
effective search space: 11691729034128
effective search space used: 11691729034128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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