ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19i14 |
|---|---|
| Clone Library Name | barley_pub |
>ASPP1_MOUSE (Q62415) Apoptosis stimulating of p53 protein 1 (Protein| phosphatase 1 regulatory subunit 13B) Length = 1087 Score = 35.8 bits (81), Expect = 0.089 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%) Frame = -1 Query: 547 TEALGVDVGCPSPPRLRLEDAIDASY--------LEPSQSATTAIRQQGALPRPSTGTPA 392 TE LG+++G PP + + SY L P +++ R++G+LPRP G P+ Sbjct: 435 TEKLGIEIGKGPPPIPGVGKPLPPSYGTYPSSGPLGPGSTSSLERRKEGSLPRPGAGPPS 494 Query: 391 Q 389 + Sbjct: 495 R 495
>ASPP1_HUMAN (Q96KQ4) Apoptosis stimulating of p53 protein 1 (Protein| phosphatase 1 regulatory subunit 13B) Length = 1090 Score = 34.7 bits (78), Expect = 0.20 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%) Frame = -1 Query: 547 TEALGVDVGCPSPPRLRLEDAIDASY--------LEPSQSATTAIRQQGALPRPSTGTPA 392 TE G+++G PP + + SY L P +++ R++G+LPRPS G P+ Sbjct: 437 TEKPGIEIGKVPPPIPGVGKQLPPSYGTYPSPTPLGPGSTSSLERRKEGSLPRPSAGLPS 496 Query: 391 Q 389 + Sbjct: 497 R 497
>EVX2_HUMAN (Q03828) Homeobox even-skipped homolog protein 2 (EVX-2)| Length = 476 Score = 34.3 bits (77), Expect = 0.26 Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 5/158 (3%) Frame = +3 Query: 60 LPFPTRTYVVAAHPVLHHRRHVQRTTPAPTSFPPTCRLSSCA*FVASSIPVDLDAFLRCH 239 LP+P ++V LH+ HV T A + ++ + F S P LD F Sbjct: 274 LPYPFHSHVP-----LHYYPHVGVTAAAAAAAASGAAAAASSPFATSIRP--LDTFRALS 326 Query: 240 RSYAHCGETSVPPSRCCA-----IAVQPVSAIAVFXXXXXXXXTPQATRTIYKVC*AGVP 404 Y+ P C+ + P +A + A AG P Sbjct: 327 HPYSR-------PELLCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAP 379 Query: 405 VDGRGSAPCCRIAVVADWDGSR*EASMASSSLSRGGEG 518 G GSAPC ++ + + A+ A++ SRGG G Sbjct: 380 PSG-GSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGG 416
>NGF_BOVIN (P13600) Beta-nerve growth factor precursor (Beta-NGF) (Fragment)| Length = 231 Score = 32.7 bits (73), Expect = 0.75 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 13/59 (22%) Frame = -3 Query: 359 RSSSPTSSAAEDGDGRHW-------------LDGDGATAAWRDGRLTTVCV*TMTSKKG 222 R +P S D +HW L DG AAWR R+ T CV ++ K G Sbjct: 170 RDPNPVDSGCRGIDAKHWNSYCTTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSRKTG 228
>NGF_PIG (Q29074) Beta-nerve growth factor precursor (Beta-NGF) (Fragment)| Length = 229 Score = 32.7 bits (73), Expect = 0.75 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 13/59 (22%) Frame = -3 Query: 359 RSSSPTSSAAEDGDGRHW-------------LDGDGATAAWRDGRLTTVCV*TMTSKKG 222 R +P S D +HW L DG AAWR R+ T CV ++ K G Sbjct: 168 RDPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSRKAG 226
>PYR1_DROME (P05990) CAD protein (Protein rudimentary) [Includes:| Glutamine-dependent carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC 3.5.2.3)] Length = 2224 Score = 32.3 bits (72), Expect = 0.98 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -3 Query: 449 YHRYTTTRSAAASVHGYPCSAYFVDGASCLRSSSPT 342 + R T+ VHG +FVDGA+ LR +SP+ Sbjct: 1850 FTRLLTSEGPGGGVHGISTKVHFVDGANFLRPNSPS 1885
>NGF_CHICK (P05200) Beta-nerve growth factor precursor (Beta-NGF)| Length = 243 Score = 32.3 bits (72), Expect = 0.98 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 13/59 (22%) Frame = -3 Query: 359 RSSSPTSSAAEDGDGRHW-------------LDGDGATAAWRDGRLTTVCV*TMTSKKG 222 R P SS D +HW L +G AAWR R+ T CV ++ K G Sbjct: 183 RDPRPVSSGCRGIDAKHWNSYCTTTHTFVKALTMEGKQAAWRFIRIDTACVCVLSRKSG 241
>EVX2_MOUSE (P49749) Homeobox even-skipped homolog protein 2 (EVX-2)| Length = 475 Score = 32.0 bits (71), Expect = 1.3 Identities = 37/158 (23%), Positives = 57/158 (36%), Gaps = 5/158 (3%) Frame = +3 Query: 60 LPFPTRTYVVAAHPVLHHRRHVQRTTPAPTSFPPTCRLSSCA*FVASSIPVDLDAFLRCH 239 LP+P ++V LH+ HV T A + ++ + F S P LD F Sbjct: 277 LPYPFHSHVP-----LHYYPHVGVTAAAAAAAASGAAAAASSPFATSIRP--LDTFRALS 329 Query: 240 RSYAHCGETSVPPSRCCA-----IAVQPVSAIAVFXXXXXXXXTPQATRTIYKVC*AGVP 404 Y+ P C+ + P +A + A AG P Sbjct: 330 HPYSR-------PELLCSFRHPGLYQAPAAAAGLNSAASAAAAAAAAAAAASSAAAAGAP 382 Query: 405 VDGRGSAPCCRIAVVADWDGSR*EASMASSSLSRGGEG 518 G SAPC ++ + + A+ A++ SRGG G Sbjct: 383 PSG-SSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGG 419
>NGF_XENLA (P21617) Nerve growth factor precursor (NGF)| Length = 231 Score = 30.8 bits (68), Expect = 2.9 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 13/59 (22%) Frame = -3 Query: 359 RSSSPTSSAAEDGDGRHW-------------LDGDGATAAWRDGRLTTVCV*TMTSKKG 222 R P SS D +HW L +G AAWR R+ T CV + S+KG Sbjct: 172 RDPKPVSSGCRGIDAKHWNSYCTTTHTFVKALTMEGKQAAWRFIRIDTACV-CVLSRKG 229
>NGFV_NAJKA (P61899) Vemon nerve growth factor (v-NGF)| Length = 116 Score = 30.8 bits (68), Expect = 2.9 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 13/59 (22%) Frame = -3 Query: 359 RSSSPTSSAAEDGDGRHW-------------LDGDGATAAWRDGRLTTVCV*TMTSKKG 222 ++ +P S D HW L +G A+WR R+ T CV +T KKG Sbjct: 57 KNPNPEPSGCRGIDSSHWNSYCTETDTFIKALTMEGNQASWRFIRIETACVCVITKKKG 115
>NGFV_NAJAT (P61898) Vemon nerve growth factor (v-NGF)| Length = 116 Score = 30.8 bits (68), Expect = 2.9 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 13/59 (22%) Frame = -3 Query: 359 RSSSPTSSAAEDGDGRHW-------------LDGDGATAAWRDGRLTTVCV*TMTSKKG 222 ++ +P S D HW L +G A+WR R+ T CV +T KKG Sbjct: 57 KNPNPEPSGCRGIDSSHWNSYCTETDTFIKALTMEGNQASWRFIRIETACVCVITKKKG 115
>NGF_PANTR (Q9N2F1) Beta-nerve growth factor precursor (Beta-NGF)| Length = 241 Score = 30.8 bits (68), Expect = 2.9 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 13/57 (22%) Frame = -3 Query: 359 RSSSPTSSAAEDGDGRHW-------------LDGDGATAAWRDGRLTTVCV*TMTSK 228 R +P S D +HW L DG AAWR R+ T CV ++ K Sbjct: 180 RDPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSRK 236
>NGF_HUMAN (P01138) Beta-nerve growth factor precursor (Beta-NGF)| Length = 241 Score = 30.8 bits (68), Expect = 2.9 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 13/57 (22%) Frame = -3 Query: 359 RSSSPTSSAAEDGDGRHW-------------LDGDGATAAWRDGRLTTVCV*TMTSK 228 R +P S D +HW L DG AAWR R+ T CV ++ K Sbjct: 180 RDPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQAAWRFIRIDTACVCVLSRK 236
>NGF_PRANA (P20675) Beta-nerve growth factor precursor (Beta-NGF)| Length = 241 Score = 30.4 bits (67), Expect = 3.7 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 13/57 (22%) Frame = -3 Query: 359 RSSSPTSSAAEDGDGRHW-------------LDGDGATAAWRDGRLTTVCV*TMTSK 228 R+ +P S D +HW L D AAWR R+ T CV +T K Sbjct: 180 RARNPVESGCRGIDSKHWNSYCTTTHTFVKALTTDDRQAAWRFIRIDTACVCVLTRK 236
>NGF_MOUSE (P01139) Beta-nerve growth factor precursor (Beta-NGF)| Length = 241 Score = 30.4 bits (67), Expect = 3.7 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 13/57 (22%) Frame = -3 Query: 359 RSSSPTSSAAEDGDGRHW-------------LDGDGATAAWRDGRLTTVCV*TMTSK 228 R+S+P S D +HW L D AAWR R+ T CV ++ K Sbjct: 180 RASNPVESGCRGIDSKHWNSYCTTTHTFVKALTTDEKQAAWRFIRIDTACVCVLSRK 236
>NGFV_VIPLE (P25428) Vemon nerve growth factor precursor (v-NGF)| Length = 244 Score = 29.3 bits (64), Expect = 8.3 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 13/57 (22%) Frame = -3 Query: 359 RSSSPTSSAAEDGDGRHW-------------LDGDGATAAWRDGRLTTVCV*TMTSK 228 ++ SP SS D +HW L +G A+WR R+ T CV ++ K Sbjct: 183 KNPSPVSSGCRGIDAKHWNSYCTTTDTFVRALTMEGNQASWRFIRIDTACVCVISRK 239
>BRC2_HALRO (O01409) T-box-containing protein 2 (AS-T2)| Length = 681 Score = 29.3 bits (64), Expect = 8.3 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +3 Query: 45 VSSIFLPFPTRTYVVAAHPVLHHRRHVQRTTP 140 V + LPFP TYV A P+ RRH +TP Sbjct: 36 VGGLQLPFPGYTYV-GASPLTQPRRHFPNSTP 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,221,072 Number of Sequences: 219361 Number of extensions: 1681868 Number of successful extensions: 5800 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5553 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5794 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
