>UBXD1_HUMAN (Q9BZV1) UBX domain-containing protein 1|
          Length = 441

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 427 LQTLFKIIKNVIENPNDIRYRRLRKTNPHFQRSVVNYKAAMEVLELIGF 281
           + T+ K + N+  +P + +YR+++  N  FQ  +   +   E  E IGF
Sbjct: 175 VDTIAKYLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGF 223

>GYRA_STAES (P0C0R0) DNA gyrase subunit A (EC 5.99.1.3)|
          Length = 893

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 29/109 (26%), Positives = 48/109 (44%)
 Frame = -3

Query: 541 KSDELQRIEEPVAALCSRLQKAIEMLRSQATPSEAASALQTLFKIIKNVIENPNDIRYRR 362
           K+ +   I E +      + + I  +R   T   A ++LQ  FK+ +   +   D+R RR
Sbjct: 373 KARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQAILDMRLRR 432

Query: 361 LRKTNPHFQRSVVNYKAAMEVLELIGFCEDVVSDEIGRAETYLVLKRND 215
           L         S  N     E+LE I   E++++DE    E  L L R++
Sbjct: 433 LTGLERDKIESEYN-----ELLEYIKELEEILADE----EVLLQLVRDE 472

>GYRA_STAEQ (Q5HK04) DNA gyrase subunit A (EC 5.99.1.3)|
          Length = 893

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 29/109 (26%), Positives = 48/109 (44%)
 Frame = -3

Query: 541 KSDELQRIEEPVAALCSRLQKAIEMLRSQATPSEAASALQTLFKIIKNVIENPNDIRYRR 362
           K+ +   I E +      + + I  +R   T   A ++LQ  FK+ +   +   D+R RR
Sbjct: 373 KARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQAILDMRLRR 432

Query: 361 LRKTNPHFQRSVVNYKAAMEVLELIGFCEDVVSDEIGRAETYLVLKRND 215
           L         S  N     E+LE I   E++++DE    E  L L R++
Sbjct: 433 LTGLERDKIESEYN-----ELLEYIKELEEILADE----EVLLQLVRDE 472

>RRPL_DUGBV (Q66431) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)|
          Length = 4036

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 514 EPVAALCSRLQKAIEMLRSQATPSEAASALQTLFKIIKN 398
           EPVA +C +L+     L  +  P E +S  QTLF  I+N
Sbjct: 584 EPVAIICDKLEDQFRKLFREL-PEECSSECQTLFNDIRN 621

>DHPS_STAHA (Q59919) Dihydropteroate synthase (EC 2.5.1.15) (Dihydropteroate|
           pyrophosphorylase) (DHPS)
          Length = 267

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -3

Query: 535 DELQRIEEPVAALCSRLQKAIEMLRSQATPSE--AASALQTLFKIIKNV 395
           DEL   E PV    SR +   EM+  + TP+E   A+A  T++ I+K +
Sbjct: 187 DELVATEYPVLLATSRKRFIKEMIGKETTPAERDEATAATTVYGIMKGI 235

>COLL6_MIMIV (Q5UQ50) Collagen-like protein 6|
          Length = 1387

 Score = 29.6 bits (65), Expect = 7.3
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 171 WLDKTSSYYYSLSDCIPVYHDISSPLC---CENGLVC 70
           +LD+T+ YYY  ++CI + +  +   C   C+ G  C
Sbjct: 53  YLDRTTQYYYKKNNCIWIKYFCNGYCCFKGCKGGFFC 89

>LAM0_DROME (P08928) Lamin Dm0|
          Length = 622

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 559 DHAANLKSDELQRIEEPVAALCSRLQKAIEMLRSQATPSEAASA 428
           D   +L  D++QR++E  A   +   K+IE LRS     +A +A
Sbjct: 284 DEIQSLYEDKIQRLQEAAARTSNSTHKSIEELRSTRVRIDALNA 327

>TRPD_COLP3 (Q47YC2) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)|
          Length = 365

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 19/52 (36%), Positives = 30/52 (57%)
 Frame = +2

Query: 185 GGLRKPQQPRIVPLQHQVGLRTPNLIRDDILAEANQLEDLHRSFVIHHAPLE 340
           G L  P +P I+ L    G+ TP L+    +A+A QL  + R+FV+H + L+
Sbjct: 195 GPLVNPAKPNIMLL----GVYTPELLMP--MAQALQLTGVKRAFVVHGSGLD 240

>ALC_BPT4 (P04546) Protein alc protein (Protein unf)|
          Length = 167

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +2

Query: 227 QHQVGLRTPNLIRDDILAEANQLEDLHRSFVIHHAPLEMRI---GLAQSSITNVVRVL 391
           +H++G+  PN    D+       ED+   F I  +P E  I   GL+Q  I  V++ L
Sbjct: 114 KHRLGISNPNRSASDM------AEDVEACFKISKSPAEHHILINGLSQDDIVEVIKTL 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,144,930
Number of Sequences: 219361
Number of extensions: 1710523
Number of successful extensions: 4913
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4912
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)