ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19i13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483192.1| Oryza sativa (japonica cultivar-group), mRNA 305 9e-80
2dbj|AK101328.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 9e-80
3gb|AY110296.1| Zea mays CL11152_1 mRNA sequence 234 3e-58
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 163 8e-37
5dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic D... 163 8e-37
6gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome... 125 2e-25
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
8gb|DQ207724.1| Zea mays cultivar B73 IDP525 marker 64 6e-07
9gb|DQ207725.1| Zea mays cultivar inbred line Mo17 IDP525 marker 56 1e-04
10gb|AC116588.3| Mus musculus BAC clone RP23-448E6 from 9, complet... 44 0.54
11gb|AY312423.1| Otus elegans clone Oe050 microsatellite sequence 42 2.1
12emb|AL135785.10| Human DNA sequence from clone RP11-113O24 on ch... 42 2.1
13gb|AC012568.7| Homo sapiens chromosome 15, clone RP11-342M21, co... 42 2.1
14gb|AC027665.4|AC027665 Genomic sequence for Arabidopsis thaliana... 42 2.1
15emb|CR956647.7| Pig DNA sequence from clone CH242-38B5 on chromo... 40 8.4
16emb|AJ131112.2|SSC131112 Sus scrofa MHC class I SLA genes, haplo... 40 8.4
17emb|CR974460.5| Pig DNA sequence from clone PigE-150I6 on chromo... 40 8.4
18emb|CT009560.9| Pig DNA sequence from clone CH242-4C12 on chromo... 40 8.4
19gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome... 40 8.4
20emb|CR956396.6| Pig DNA sequence from clone CH242-205N12 on chro... 40 8.4
21emb|CR956410.6| Pig DNA sequence from clone PigE-123H20 on chrom... 40 8.4
22gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, com... 40 8.4
23emb|AL590809.5| Human DNA sequence from clone RP11-733H21 on chr... 40 8.4
24emb|AL160395.24| Human DNA sequence from clone RP11-474D23 on ch... 40 8.4
25emb|AJ427478.2|SSC427478 Sus scrofa ASIP gene for agouti signall... 40 8.4
26emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete... 40 8.4
27gb|AC091723.3| Sus scrofa clone RP44-349L7, complete sequence 40 8.4
28gb|AF067624.1| Caenorhabditis elegans cosmid M01B12, complete se... 40 8.4
29gb|DP000062.1| Sus scrofa target 117 genomic scaffold 40 8.4
30dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, ... 40 8.4
31gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, comple... 40 8.4
32gb|AC159001.2| Mus musculus BAC clone RP24-221A23 from chromosom... 40 8.4
33emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complet... 40 8.4
34dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
35dbj|AB206998.1| Sus scrofa ASIP and AHCY genes for agouti signal... 40 8.4
36emb|BX294104.7| Zebrafish DNA sequence from clone CH211-245I22 i... 40 8.4
37gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence 40 8.4
38gb|AC092534.4| Homo sapiens BAC clone RP13-629D7 from 2, complet... 40 8.4
39gb|DQ020488.1| Sus scrofa clone BAC KNP_798F4, complete sequence 40 8.4
40emb|AJ544894.1|TNI544894 Tetraodon nigroviridis crfb8 gene for h... 40 8.4
41gb|AC104483.2| Sus scrofa clone RP44-427G13, complete sequence 40 8.4
42gb|AC157575.1| Mus musculus BAC clone RP23-16D16 from 9, complet... 40 8.4
43gb|AC172370.2| Gallus gallus BAC clone CH261-119J18 from chromos... 40 8.4
44gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.4
45emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.4
46emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chro... 40 8.4
47emb|CR974587.14| Pig DNA sequence from clone CH242-288P9 on chro... 40 8.4 
>ref|XM_483192.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2237

 Score =  305 bits (154), Expect = 9e-80
 Identities = 346/410 (84%)
 Strand = Plus / Minus

                                                                        
Query: 168  gccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 227
            |||||||| |||||||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 2013 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 1954

                                                                        
Query: 228  agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 287
            |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 1953 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 1894

                                                                        
Query: 288  atcaactcgaggacctccatcgcagctttgtaattcaccacgctcctttggaaatgcgga 347
            ||||  || ||||||||||| ||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 1893 atcagttcaaggacctccattgcagctttgtagttcgccacactcctttggaactgtgga 1834

                                                                        
Query: 348  ttggtcttgcgcaatcttctataacgaatgtcgttcgggttctctatcacattcttgata 407
            |||| ||| |||| ||| || ||    || || |  |||| |||||||||||||||||| 
Sbjct: 1833 ttggacttacgcagtctcctgtacttgatatcatgtgggtgctctatcacattcttgatg 1774

                                                                        
Query: 408  attttgaagagtgtttgaagtgcagaggctgcctctgaaggtgttgcttgcgaccggagc 467
            || || |||||||||||||| ||||| | |||||||| |||||||||||| || || |||
Sbjct: 1773 atcttaaagagtgtttgaagagcagaagttgcctctgtaggtgttgcttgtgagcgaagc 1714

                                                                        
Query: 468  atttcaatagccttctggaggcgcgaacagagggctgccactggctcttctattctttgc 527
            |||||||| |||||||| ||||| | |||||||||||||||||| ||||| || || || 
Sbjct: 1713 atttcaatggccttctgaaggcgtgcacagagggctgccactggttcttcgatcctctgg 1654

                                                              
Query: 528  agctcatcgctctttaaattagcagcatgatcgtcagggtcaggttcaga 577
            ||||||  | | ||| |||||||||||||||| ||||| ||||| |||||
Sbjct: 1653 agctcactgatgtttgaattagcagcatgatcatcaggatcaggctcaga 1604
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>dbj|AK101328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034G12, full
            insert sequence
          Length = 2575

 Score =  305 bits (154), Expect = 9e-80
 Identities = 346/410 (84%)
 Strand = Plus / Minus

                                                                        
Query: 168  gccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 227
            |||||||| |||||||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 2350 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 2291

                                                                        
Query: 228  agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 287
            |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 2290 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 2231

                                                                        
Query: 288  atcaactcgaggacctccatcgcagctttgtaattcaccacgctcctttggaaatgcgga 347
            ||||  || ||||||||||| ||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 2230 atcagttcaaggacctccattgcagctttgtagttcgccacactcctttggaactgtgga 2171

                                                                        
Query: 348  ttggtcttgcgcaatcttctataacgaatgtcgttcgggttctctatcacattcttgata 407
            |||| ||| |||| ||| || ||    || || |  |||| |||||||||||||||||| 
Sbjct: 2170 ttggacttacgcagtctcctgtacttgatatcatgtgggtgctctatcacattcttgatg 2111

                                                                        
Query: 408  attttgaagagtgtttgaagtgcagaggctgcctctgaaggtgttgcttgcgaccggagc 467
            || || |||||||||||||| ||||| | |||||||| |||||||||||| || || |||
Sbjct: 2110 atcttaaagagtgtttgaagagcagaagttgcctctgtaggtgttgcttgtgagcgaagc 2051

                                                                        
Query: 468  atttcaatagccttctggaggcgcgaacagagggctgccactggctcttctattctttgc 527
            |||||||| |||||||| ||||| | |||||||||||||||||| ||||| || || || 
Sbjct: 2050 atttcaatggccttctgaaggcgtgcacagagggctgccactggttcttcgatcctctgg 1991

                                                              
Query: 528  agctcatcgctctttaaattagcagcatgatcgtcagggtcaggttcaga 577
            ||||||  | | ||| |||||||||||||||| ||||| ||||| |||||
Sbjct: 1990 agctcactgatgtttgaattagcagcatgatcatcaggatcaggctcaga 1941
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>gb|AY110296.1| Zea mays CL11152_1 mRNA sequence
          Length = 1213

 Score =  234 bits (118), Expect = 3e-58
 Identities = 343/418 (82%)
 Strand = Plus / Minus

                                                                       
Query: 159 ttttatcaagccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcg 218
           |||||||||||||  || || |||||||| ||||| || ||||| ||||| |||||||| 
Sbjct: 903 ttttatcaagccagagagacctcaagggatgactttgccagccatagcaatccaggatca 844

                                                                       
Query: 219 ttcctcttcagcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcg 278
           ||||| ||||  |||||||| ||||| |||||||||| |||||| ||||  |||||||| 
Sbjct: 843 ttccttttcaataccaggtaagtctcagcacgcccaacctcatctgagattacatcctca 784

                                                                       
Query: 279 cagaagccaatcaactcgaggacctccatcgcagctttgtaattcaccacgctcctttgg 338
           ||||| |||||||| || || |||||||| |||||||| || ||  | ||||||||||||
Sbjct: 783 cagaaaccaatcaattcaagaacctccattgcagctttatagtttgctacgctcctttgg 724

                                                                       
Query: 339 aaatgcggattggtcttgcgcaatcttctataacgaatgtcgttcgggttctctatcaca 398
           ||||| ||||||| ||| ||||||||  ||||   |||||| || || | |||||| |||
Sbjct: 723 aaatgtggattggacttacgcaatctcttatacttaatgtcatttggatgctctataaca 664

                                                                       
Query: 399 ttcttgataattttgaagagtgtttgaagtgcagaggctgcctctgaaggtgttgcttgc 458
           ||||||||||| || ||||| |||||||  |||||  ||||||||  |||||||||||||
Sbjct: 663 ttcttgataatcttaaagagagtttgaatagcagactctgcctctacaggtgttgcttgc 604

                                                                       
Query: 459 gaccggagcatttcaatagccttctggaggcgcgaacagagggctgccactggctcttct 518
            |||| ||||| | ||| | ||||||||| || ||||||||||||  |||||| ||||| 
Sbjct: 603 aaccgaagcatcttaatggacttctggagtcgtgaacagagggctctcactggttcttca 544

                                                                     
Query: 519 attctttgcagctcatcgctctttaaattagcagcatgatcgtcagggtcaggttcag 576
           |  ||||||||||||| | | ||| | | | || ||||||||||||| ||||||||||
Sbjct: 543 accctttgcagctcattgatgtttgagtcaccaacatgatcgtcaggatcaggttcag 486
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  163 bits (82), Expect = 8e-37
 Identities = 166/194 (85%)
 Strand = Plus / Minus

                                                                            
Query: 384      gggttctctatcacattcttgataattttgaagagtgtttgaagtgcagaggctgcctct 443
                |||| |||||||||||||||||| || || |||||||||||||| ||||| | |||||||
Sbjct: 24723344 gggtgctctatcacattcttgatgatcttaaagagtgtttgaagagcagaagttgcctct 24723285

                                                                            
Query: 444      gaaggtgttgcttgcgaccggagcatttcaatagccttctggaggcgcgaacagagggct 503
                | |||||||||||| || || ||||||||||| |||||||| ||||| | ||||||||||
Sbjct: 24723284 gtaggtgttgcttgtgagcgaagcatttcaatggccttctgaaggcgtgcacagagggct 24723225

                                                                            
Query: 504      gccactggctcttctattctttgcagctcatcgctctttaaattagcagcatgatcgtca 563
                |||||||| ||||| || || || ||||||  | | ||| |||||||||||||||| |||
Sbjct: 24723224 gccactggttcttcgatcctctggagctcactgatgtttgaattagcagcatgatcatca 24723165

                              
Query: 564      gggtcaggttcaga 577
                || ||||| |||||
Sbjct: 24723164 ggatcaggctcaga 24723151



 Score =  149 bits (75), Expect = 1e-32
 Identities = 129/147 (87%)
 Strand = Plus / Minus

                                                                            
Query: 168      gccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 227
                |||||||| |||||||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 24723752 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 24723693

                                                                            
Query: 228      agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 287
                |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 24723692 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 24723633

                                           
Query: 288      atcaactcgaggacctccatcgcagct 314
                ||||  || ||||||||||| ||||||
Sbjct: 24723632 atcagttcaaggacctccattgcagct 24723606
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>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1345_D02
          Length = 159613

 Score =  163 bits (82), Expect = 8e-37
 Identities = 166/194 (85%)
 Strand = Plus / Minus

                                                                         
Query: 384   gggttctctatcacattcttgataattttgaagagtgtttgaagtgcagaggctgcctct 443
             |||| |||||||||||||||||| || || |||||||||||||| ||||| | |||||||
Sbjct: 24145 gggtgctctatcacattcttgatgatcttaaagagtgtttgaagagcagaagttgcctct 24086

                                                                         
Query: 444   gaaggtgttgcttgcgaccggagcatttcaatagccttctggaggcgcgaacagagggct 503
             | |||||||||||| || || ||||||||||| |||||||| ||||| | ||||||||||
Sbjct: 24085 gtaggtgttgcttgtgagcgaagcatttcaatggccttctgaaggcgtgcacagagggct 24026

                                                                         
Query: 504   gccactggctcttctattctttgcagctcatcgctctttaaattagcagcatgatcgtca 563
             |||||||| ||||| || || || ||||||  | | ||| |||||||||||||||| |||
Sbjct: 24025 gccactggttcttcgatcctctggagctcactgatgtttgaattagcagcatgatcatca 23966

                           
Query: 564   gggtcaggttcaga 577
             || ||||| |||||
Sbjct: 23965 ggatcaggctcaga 23952



 Score =  149 bits (75), Expect = 1e-32
 Identities = 129/147 (87%)
 Strand = Plus / Minus

                                                                         
Query: 168   gccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 227
             |||||||| |||||||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 24553 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 24494

                                                                         
Query: 228   agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 287
             |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 24493 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 24434

                                        
Query: 288   atcaactcgaggacctccatcgcagct 314
             ||||  || ||||||||||| ||||||
Sbjct: 24433 atcagttcaaggacctccattgcagct 24407
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>gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1653_D06,
             complete sequence
          Length = 71193

 Score =  125 bits (63), Expect = 2e-25
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                         
Query: 172   tggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagca 231
             |||| |||||||| |||||||| ||||||||| |||| | |||||||||||| ||||  |
Sbjct: 27043 tggaaacttcaagagaggactttgcaagccacggcaagctaggatcgttccttttcaata 26984

                                                                         
Query: 232   ccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatca 291
             ||| ||| ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 26983 ccaagtaagtctctgcacgaccaatctcatccgagacaacatcctcacagaaaccaatca 26924

                                    
Query: 292   actcgaggacctccatcgcagct 314
             | || |||| |||||| ||||||
Sbjct: 26923 attcaaggaactccattgcagct 26901



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 87/102 (85%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                         
Query: 384   gggttctctatcacattcttgataat-tttgaagagtgtttgaagtgcagaggctgcctc 442
             |||| |||||||||||||||||| || ||  |||||||||||||  ||||| | ||||||
Sbjct: 24688 gggtgctctatcacattcttgatgatcttaaaagagtgtttgaatagcagaagttgcctc 24629

                                                       
Query: 443   tgaaggtgttgcttgcgaccggagcatttcaatagccttctg 484
             || ||||||| |||| || || ||||||||||| ||||||||
Sbjct: 24628 tgcaggtgtt-cttgtgagcgaagcatttcaatggccttctg 24588
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  125 bits (63), Expect = 2e-25
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                            
Query: 172      tggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagca 231
                |||| |||||||| |||||||| ||||||||| |||| | |||||||||||| ||||  |
Sbjct: 10810111 tggaaacttcaagagaggactttgcaagccacggcaagctaggatcgttccttttcaata 10810052

                                                                            
Query: 232      ccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatca 291
                ||| ||| ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 10810051 ccaagtaagtctctgcacgaccaatctcatccgagacaacatcctcacagaaaccaatca 10809992

                                       
Query: 292      actcgaggacctccatcgcagct 314
                | || |||| |||||| ||||||
Sbjct: 10809991 attcaaggaactccattgcagct 10809969



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 87/102 (85%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                            
Query: 384      gggttctctatcacattcttgataat-tttgaagagtgtttgaagtgcagaggctgcctc 442
                |||| |||||||||||||||||| || ||  |||||||||||||  ||||| | ||||||
Sbjct: 10807756 gggtgctctatcacattcttgatgatcttaaaagagtgtttgaatagcagaagttgcctc 10807697

                                                          
Query: 443      tgaaggtgttgcttgcgaccggagcatttcaatagccttctg 484
                || ||||||| |||| || || ||||||||||| ||||||||
Sbjct: 10807696 tgcaggtgtt-cttgtgagcgaagcatttcaatggccttctg 10807656
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>gb|DQ207724.1| Zea mays cultivar B73 IDP525 marker
          Length = 286

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                       
Query: 159 ttttatcaagccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcg 218
           |||||||||||||  || || |||||||||||||| || ||||| ||||| |||||||| 
Sbjct: 203 ttttatcaagccagagagacctcaagggaggactttgccagccatagcaatccaggatca 262

                               
Query: 219 ttcctcttcagcaccaggta 238
           ||||| ||||  ||||||||
Sbjct: 263 ttccttttcaataccaggta 282
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>gb|DQ207725.1| Zea mays cultivar inbred line Mo17 IDP525 marker
          Length = 406

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                       
Query: 159 ttttatcaagccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcg 218
           |||||||||||||  || || |||||||| ||||| || ||||| ||||| |||||||| 
Sbjct: 326 ttttatcaagccagagagacctcaagggatgactttgccagccatagcaatccaggatca 385

                               
Query: 219 ttcctcttcagcaccaggta 238
           ||||| ||||  ||||||||
Sbjct: 386 ttccttttcaataccaggta 405
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>gb|AC116588.3| Mus musculus BAC clone RP23-448E6 from 9, complete sequence
          Length = 189927

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 536   gctctttaaattagcagcatga 557
             ||||||||||||||||||||||
Sbjct: 81446 gctctttaaattagcagcatga 81425
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>gb|AY312423.1| Otus elegans clone Oe050 microsatellite sequence
          Length = 500

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 407 aattttgaagagtgtttgaag 427
           |||||||||||||||||||||
Sbjct: 162 aattttgaagagtgtttgaag 142
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>emb|AL135785.10| Human DNA sequence from clone RP11-113O24 on chromosome 9p11-13.3
             Contains a novel gene, possible ortholog of mouse
             insulin-like growth factor binding protein 7 (IGFBP7), a
             novel gene similar to aldehyde dehydrogenase 1 family,
             member B1 (ALDH5, ALDHX, MGC2230) (ALDH1B1), a novel gene
             and four CpG islands, complete sequence
          Length = 166207

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 434   ggctgcctctgaaggtgttgc 454
             |||||||||||||||||||||
Sbjct: 79819 ggctgcctctgaaggtgttgc 79799
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>gb|AC012568.7| Homo sapiens chromosome 15, clone RP11-342M21, complete sequence
          Length = 166785

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 20     agctgacaaacaacaccacag 40
              |||||||||||||||||||||
Sbjct: 101656 agctgacaaacaacaccacag 101636
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>gb|AC027665.4|AC027665 Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I,
             complete sequence
          Length = 99231

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    aagctgacaaacaacaccaca 39
             |||||||||||||||||||||
Sbjct: 74220 aagctgacaaacaacaccaca 74240
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>emb|CR956647.7| Pig DNA sequence from clone CH242-38B5 on chromosome 4, complete sequence
          Length = 131053

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    agccacagcaacccaggatc 217
              ||||||||||||||||||||
Sbjct: 114977 agccacagcaacccaggatc 114996
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>emb|AJ131112.2|SSC131112 Sus scrofa MHC class I SLA genes, haplotype H01, clone BAC 490B10
          Length = 154782

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    agccacagcaacccaggatc 217
              ||||||||||||||||||||
Sbjct: 114031 agccacagcaacccaggatc 114012
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>emb|CR974460.5| Pig DNA sequence from clone PigE-150I6 on chromosome 7, complete
             sequence
          Length = 122162

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   agccacagcaacccaggatc 217
             ||||||||||||||||||||
Sbjct: 76694 agccacagcaacccaggatc 76713
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>emb|CT009560.9| Pig DNA sequence from clone CH242-4C12 on chromosome 17, complete
             sequence
          Length = 166118

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   agccacagcaacccaggatc 217
             ||||||||||||||||||||
Sbjct: 29160 agccacagcaacccaggatc 29141
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>gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome 7, complete sequence
          Length = 164223

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 400    tcttgataattttgaagagtgttt 423
              |||||| |||||||||||||||||
Sbjct: 105946 tcttgagaattttgaagagtgttt 105969
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>emb|CR956396.6| Pig DNA sequence from clone CH242-205N12 on chromosome 7, complete
              sequence
          Length = 175108

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    agccacagcaacccaggatc 217
              ||||||||||||||||||||
Sbjct: 162018 agccacagcaacccaggatc 162037
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>emb|CR956410.6| Pig DNA sequence from clone PigE-123H20 on chromosome 7, complete
              sequence
          Length = 175487

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    agccacagcaacccaggatc 217
              ||||||||||||||||||||
Sbjct: 144535 agccacagcaacccaggatc 144516
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>gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, complete sequence
          Length = 226307

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 400   tcttgataattttgaagagtgttt 423
             |||||| |||||||||||||||||
Sbjct: 23286 tcttgagaattttgaagagtgttt 23309
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>emb|AL590809.5| Human DNA sequence from clone RP11-733H21 on chromosome Xq23-24,
             complete sequence
          Length = 105329

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   gttcctcttcagcaccaggt 237
             ||||||||||||||||||||
Sbjct: 25779 gttcctcttcagcaccaggt 25760
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>emb|AL160395.24| Human DNA sequence from clone RP11-474D23 on chromosome 13q33.1-34
              Contains a the 3' end of a novel gene (MGC35169) and 2 CpG
              islands, complete sequence
          Length = 179959

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    ttcttgataattttgaagag 418
              ||||||||||||||||||||
Sbjct: 126184 ttcttgataattttgaagag 126203
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>emb|AJ427478.2|SSC427478 Sus scrofa ASIP gene for agouti signalling protein and AHCY gene for
              S-adenosylhomocysteine hydrolase
          Length = 204138

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    agccacagcaacccaggatc 217
              ||||||||||||||||||||
Sbjct: 148219 agccacagcaacccaggatc 148238
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>emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete sequence
          Length = 151259

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   agccacagcaacccaggatc 217
             ||||||||||||||||||||
Sbjct: 76526 agccacagcaacccaggatc 76545



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  agccacagcaacccaggatc 217
            ||||||||||||||||||||
Sbjct: 7098 agccacagcaacccaggatc 7117
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>gb|AC091723.3| Sus scrofa clone RP44-349L7, complete sequence
          Length = 76665

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 198  agccacagcaacccaggatc 217
            ||||||||||||||||||||
Sbjct: 6678 agccacagcaacccaggatc 6659
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>gb|AF067624.1| Caenorhabditis elegans cosmid M01B12, complete sequence
          Length = 34907

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 408   attttgaagagtgtttgaag 427
             ||||||||||||||||||||
Sbjct: 30944 attttgaagagtgtttgaag 30963
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>gb|DP000062.1| Sus scrofa target 117 genomic scaffold
          Length = 605739

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    agccacagcaacccaggatc 217
              ||||||||||||||||||||
Sbjct: 346739 agccacagcaacccaggatc 346758
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>dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, SLA-11 pseudogene,
             complete cds
          Length = 147386

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   agccacagcaacccaggatc 217
             ||||||||||||||||||||
Sbjct: 15925 agccacagcaacccaggatc 15906
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>gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, complete sequence
          Length = 39786

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   tcttgataattttgaagagt 419
             ||||||||||||||||||||
Sbjct: 22531 tcttgataattttgaagagt 22550
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>gb|AC159001.2| Mus musculus BAC clone RP24-221A23 from chromosome 9, complete sequence
          Length = 161507

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   tgaaatgtcatgatatacag 122
             ||||||||||||||||||||
Sbjct: 24000 tgaaatgtcatgatatacag 23981
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>emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complete sequence
          Length = 172252

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   agccacagcaacccaggatc 217
             ||||||||||||||||||||
Sbjct: 82183 agccacagcaacccaggatc 82202
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 512      ctcttctattctttgcagct 531
                ||||||||||||||||||||
Sbjct: 10059259 ctcttctattctttgcagct 10059240
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>dbj|AB206998.1| Sus scrofa ASIP and AHCY genes for agouti signaling protein and
             S-adenosylhomocysteine hydrolase, complete cds
          Length = 127234

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   agccacagcaacccaggatc 217
             ||||||||||||||||||||
Sbjct: 29241 agccacagcaacccaggatc 29260
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>emb|BX294104.7| Zebrafish DNA sequence from clone CH211-245I22 in linkage group 1,
              complete sequence
          Length = 161644

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      atttgatatacaattgtgaa 20
              ||||||||||||||||||||
Sbjct: 152857 atttgatatacaattgtgaa 152838
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>gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence
          Length = 155710

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   agccacagcaacccaggatc 217
             ||||||||||||||||||||
Sbjct: 24945 agccacagcaacccaggatc 24926
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>gb|AC092534.4| Homo sapiens BAC clone RP13-629D7 from 2, complete sequence
          Length = 33335

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 584   aattgagtggtttctgctct 603
             ||||||||||||||||||||
Sbjct: 18715 aattgagtggtttctgctct 18696
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>gb|DQ020488.1| Sus scrofa clone BAC KNP_798F4, complete sequence
          Length = 125904

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   agccacagcaacccaggatc 217
             ||||||||||||||||||||
Sbjct: 68226 agccacagcaacccaggatc 68245
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>emb|AJ544894.1|TNI544894 Tetraodon nigroviridis crfb8 gene for helical cytokine receptor
            CRFB8, exons 1-8
          Length = 15197

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   aacaacaccacagtttcatg 47
            ||||||||||||||||||||
Sbjct: 6832 aacaacaccacagtttcatg 6813
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>gb|AC104483.2| Sus scrofa clone RP44-427G13, complete sequence
          Length = 93393

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   agccacagcaacccaggatc 217
             ||||||||||||||||||||
Sbjct: 47778 agccacagcaacccaggatc 47759
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>gb|AC157575.1| Mus musculus BAC clone RP23-16D16 from 9, complete sequence
          Length = 196682

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  tgaaatgtcatgatatacag 122
            ||||||||||||||||||||
Sbjct: 3700 tgaaatgtcatgatatacag 3719
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>gb|AC172370.2| Gallus gallus BAC clone CH261-119J18 from chromosome ul, complete
             sequence
          Length = 260878

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 164   tcaagccatggatacttcaaggga 187
             |||||||| |||||||||||||||
Sbjct: 27561 tcaagccaaggatacttcaaggga 27538
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 512      ctcttctattctttgcagct 531
                ||||||||||||||||||||
Sbjct: 10059144 ctcttctattctttgcagct 10059125
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>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145890

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 512    ctcttctattctttgcagct 531
              ||||||||||||||||||||
Sbjct: 103362 ctcttctattctttgcagct 103381
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>emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chromosome 17, complete
             sequence
          Length = 168798

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   agccacagcaacccaggatc 217
             ||||||||||||||||||||
Sbjct: 57612 agccacagcaacccaggatc 57593
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>emb|CR974587.14| Pig DNA sequence from clone CH242-288P9 on chromosome 7, complete
             sequence
          Length = 165092

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   agccacagcaacccaggatc 217
             ||||||||||||||||||||
Sbjct: 19794 agccacagcaacccaggatc 19775


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,138,312
Number of Sequences: 3902068
Number of extensions: 5138312
Number of successful extensions: 94594
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94289
Number of HSP's gapped (non-prelim): 299
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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