ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19i12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_464451.1| Oryza sativa (japonica cultivar-group), mRNA 365 1e-97
2ref|XM_506745.1| PREDICTED Oryza sativa (japonica cultivar-group... 365 1e-97
3dbj|AK102395.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 1e-97
4dbj|AK109481.1| Oryza sativa (japonica cultivar-group) cDNA clon... 357 3e-95
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
6dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic D... 224 3e-55
7gb|BT018604.1| Zea mays clone EL01N0450B01.d mRNA sequence 202 1e-48
8gb|AY112416.1| Zea mays CL8338_1 mRNA sequence 147 6e-32
9gb|AY107594.1| Zea mays PCO118980 mRNA sequence 111 3e-21
10dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete ge... 82 3e-12
11gb|AY359555.1| Callinectes sapidus clone CSA-016 microsatellite ... 44 0.67
12gb|AC103371.9| Mus musculus chromosome 5, clone RP24-399A15, com... 42 2.7
13gb|AC113203.10| Mus musculus chromosome 5, clone RP23-276C23, co... 42 2.7
14gb|AC158512.2| Mus musculus BAC clone RP24-319O6 from chromosome... 42 2.7
15dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 42 2.7
16dbj|AK019319.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 42 2.7
17gb|AC108805.15| Mus musculus chromosome 9, clone RP23-226G13, co... 42 2.7
18emb|AL672218.9| Mouse DNA sequence from clone RP24-BM212H6 on ch... 42 2.7

>ref|XM_464451.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1650

 Score =  365 bits (184), Expect = 1e-97
 Identities = 420/499 (84%), Gaps = 6/499 (1%)
 Strand = Plus / Minus

                                                                        
Query: 274  ctgttataatctgtcaagggcatcgacgatggccttgcgaaacgagtcgttgtggagtaa 333
            |||||||| ||| ||||| ||||| || |||||||||||||||| |||||||||||| ||
Sbjct: 1427 ctgttatagtctatcaagagcatcaacaatggccttgcgaaacgcgtcgttgtggaggaa 1368

                                                                        
Query: 334  aaaagaggacacatggcctcccatcacccaccggacttctgagcccggccatgccttctg 393
            ||| || || || || |||||  | ||||||||||| ||||| || ||||||||||| ||
Sbjct: 1367 aaacgacgatacgtgccctccggttacccaccggacctctgaacctggccatgccttttg 1308

                                                                        
Query: 394  gagctccatgaccgagtgtctaggaatataaccgtcatccgttgcaccaacaaaaatgac 453
            ||||||||| | ||| ||| | || || || |||||||||||||||||||||||||||||
Sbjct: 1307 gagctccattatcgaatgtttggggatgtagccgtcatccgttgcaccaacaaaaatgac 1248

                                                                        
Query: 454  ggcctgtggattcttcggtaggggaaaccgagtgacgtccgtcagagatagcactgaccg 513
             |||||||| ||||| || |  ||||| ||||||||||| |||| ||| |||||||| ||
Sbjct: 1247 agcctgtgggttctttggcactggaaatcgagtgacgtcagtcaaagacagcactgatcg 1188

                                                                        
Query: 514  taatctgtcttttacttgctcaatagtgattccggat------gccgcatcttcggacaa 567
             || || ||| |||||||||||||||||||||| |||      |||   ||||| | |||
Sbjct: 1187 caacctctctcttacttgctcaatagtgattcctgatttctgggccatgtcttctgtcaa 1128

                                                                        
Query: 568  agaagttgcatctttagctaatgctgctgcatcttctctcagtgcttcccaagctgtggc 627
            ||||||| | ||||  || |||| |||||||||||  |||| ||| ||||||||||||||
Sbjct: 1127 agaagttacgtcttgggccaatgttgctgcatctttcctcaatgcatcccaagctgtggc 1068

                                                                        
Query: 628  atgtctgtaaagtccttcacagaaaggtaccacagcagaatgtggagcaagaaatggtag 687
            ||| ||||| || || ||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 1067 atgcctgtagagcccgtcacagaaaggcaccacagcagaatgcggagcaagaaatggcag 1008

                                                                        
Query: 688  tgtggcaattggcgtaggatgcaaggatcctaccattgcagcatgtacgccacccatgct 747
             || |||||||| || || ||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 1007 cgtagcaattggtgttgggtgcaaggatccaaccattgcagcatgtacaccacccatgct 948

                               
Query: 748  gagcccacatatgcccatc 766
            |||||| ||||||||||||
Sbjct: 947  gagcccgcatatgcccatc 929



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>ref|XM_506745.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1225_F07.7 mRNA
          Length = 1735

 Score =  365 bits (184), Expect = 1e-97
 Identities = 420/499 (84%), Gaps = 6/499 (1%)
 Strand = Plus / Minus

                                                                        
Query: 274  ctgttataatctgtcaagggcatcgacgatggccttgcgaaacgagtcgttgtggagtaa 333
            |||||||| ||| ||||| ||||| || |||||||||||||||| |||||||||||| ||
Sbjct: 1498 ctgttatagtctatcaagagcatcaacaatggccttgcgaaacgcgtcgttgtggaggaa 1439

                                                                        
Query: 334  aaaagaggacacatggcctcccatcacccaccggacttctgagcccggccatgccttctg 393
            ||| || || || || |||||  | ||||||||||| ||||| || ||||||||||| ||
Sbjct: 1438 aaacgacgatacgtgccctccggttacccaccggacctctgaacctggccatgccttttg 1379

                                                                        
Query: 394  gagctccatgaccgagtgtctaggaatataaccgtcatccgttgcaccaacaaaaatgac 453
            ||||||||| | ||| ||| | || || || |||||||||||||||||||||||||||||
Sbjct: 1378 gagctccattatcgaatgtttggggatgtagccgtcatccgttgcaccaacaaaaatgac 1319

                                                                        
Query: 454  ggcctgtggattcttcggtaggggaaaccgagtgacgtccgtcagagatagcactgaccg 513
             |||||||| ||||| || |  ||||| ||||||||||| |||| ||| |||||||| ||
Sbjct: 1318 agcctgtgggttctttggcactggaaatcgagtgacgtcagtcaaagacagcactgatcg 1259

                                                                        
Query: 514  taatctgtcttttacttgctcaatagtgattccggat------gccgcatcttcggacaa 567
             || || ||| |||||||||||||||||||||| |||      |||   ||||| | |||
Sbjct: 1258 caacctctctcttacttgctcaatagtgattcctgatttctgggccatgtcttctgtcaa 1199

                                                                        
Query: 568  agaagttgcatctttagctaatgctgctgcatcttctctcagtgcttcccaagctgtggc 627
            ||||||| | ||||  || |||| |||||||||||  |||| ||| ||||||||||||||
Sbjct: 1198 agaagttacgtcttgggccaatgttgctgcatctttcctcaatgcatcccaagctgtggc 1139

                                                                        
Query: 628  atgtctgtaaagtccttcacagaaaggtaccacagcagaatgtggagcaagaaatggtag 687
            ||| ||||| || || ||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 1138 atgcctgtagagcccgtcacagaaaggcaccacagcagaatgcggagcaagaaatggcag 1079

                                                                        
Query: 688  tgtggcaattggcgtaggatgcaaggatcctaccattgcagcatgtacgccacccatgct 747
             || |||||||| || || ||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 1078 cgtagcaattggtgttgggtgcaaggatccaaccattgcagcatgtacaccacccatgct 1019

                               
Query: 748  gagcccacatatgcccatc 766
            |||||| ||||||||||||
Sbjct: 1018 gagcccgcatatgcccatc 1000



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>dbj|AK102395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092H01, full
            insert sequence
          Length = 1650

 Score =  365 bits (184), Expect = 1e-97
 Identities = 420/499 (84%), Gaps = 6/499 (1%)
 Strand = Plus / Minus

                                                                        
Query: 274  ctgttataatctgtcaagggcatcgacgatggccttgcgaaacgagtcgttgtggagtaa 333
            |||||||| ||| ||||| ||||| || |||||||||||||||| |||||||||||| ||
Sbjct: 1427 ctgttatagtctatcaagagcatcaacaatggccttgcgaaacgcgtcgttgtggaggaa 1368

                                                                        
Query: 334  aaaagaggacacatggcctcccatcacccaccggacttctgagcccggccatgccttctg 393
            ||| || || || || |||||  | ||||||||||| ||||| || ||||||||||| ||
Sbjct: 1367 aaacgacgatacgtgccctccggttacccaccggacctctgaacctggccatgccttttg 1308

                                                                        
Query: 394  gagctccatgaccgagtgtctaggaatataaccgtcatccgttgcaccaacaaaaatgac 453
            ||||||||| | ||| ||| | || || || |||||||||||||||||||||||||||||
Sbjct: 1307 gagctccattatcgaatgtttggggatgtagccgtcatccgttgcaccaacaaaaatgac 1248

                                                                        
Query: 454  ggcctgtggattcttcggtaggggaaaccgagtgacgtccgtcagagatagcactgaccg 513
             |||||||| ||||| || |  ||||| ||||||||||| |||| ||| |||||||| ||
Sbjct: 1247 agcctgtgggttctttggcactggaaatcgagtgacgtcagtcaaagacagcactgatcg 1188

                                                                        
Query: 514  taatctgtcttttacttgctcaatagtgattccggat------gccgcatcttcggacaa 567
             || || ||| |||||||||||||||||||||| |||      |||   ||||| | |||
Sbjct: 1187 caacctctctcttacttgctcaatagtgattcctgatttctgggccatgtcttctgtcaa 1128

                                                                        
Query: 568  agaagttgcatctttagctaatgctgctgcatcttctctcagtgcttcccaagctgtggc 627
            ||||||| | ||||  || |||| |||||||||||  |||| ||| ||||||||||||||
Sbjct: 1127 agaagttacgtcttgggccaatgttgctgcatctttcctcaatgcatcccaagctgtggc 1068

                                                                        
Query: 628  atgtctgtaaagtccttcacagaaaggtaccacagcagaatgtggagcaagaaatggtag 687
            ||| ||||| || || ||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 1067 atgcctgtagagcccgtcacagaaaggcaccacagcagaatgcggagcaagaaatggcag 1008

                                                                        
Query: 688  tgtggcaattggcgtaggatgcaaggatcctaccattgcagcatgtacgccacccatgct 747
             || |||||||| || || ||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 1007 cgtagcaattggtgttgggtgcaaggatccaaccattgcagcatgtacaccacccatgct 948

                               
Query: 748  gagcccacatatgcccatc 766
            |||||| ||||||||||||
Sbjct: 947  gagcccgcatatgcccatc 929



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>dbj|AK109481.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B01, full
            insert sequence
          Length = 1735

 Score =  357 bits (180), Expect = 3e-95
 Identities = 419/499 (83%), Gaps = 6/499 (1%)
 Strand = Plus / Minus

                                                                        
Query: 274  ctgttataatctgtcaagggcatcgacgatggccttgcgaaacgagtcgttgtggagtaa 333
            |||||||| ||| ||||| ||||| || |||||||||||||||| |||||||||||| ||
Sbjct: 1498 ctgttatagtctatcaagagcatcaacaatggccttgcgaaacgcgtcgttgtggaggaa 1439

                                                                        
Query: 334  aaaagaggacacatggcctcccatcacccaccggacttctgagcccggccatgccttctg 393
            ||| || || || || |||||  | ||||||||||| ||||| || ||||||||||| ||
Sbjct: 1438 aaacgacgatacgtgccctccggttacccaccggacctctgaacctggccatgccttttg 1379

                                                                        
Query: 394  gagctccatgaccgagtgtctaggaatataaccgtcatccgttgcaccaacaaaaatgac 453
            ||||||||| | ||| ||| | || || || |||||||||||||||||||||||||||||
Sbjct: 1378 gagctccattatcgaatgtttggggatgtagccgtcatccgttgcaccaacaaaaatgac 1319

                                                                        
Query: 454  ggcctgtggattcttcggtaggggaaaccgagtgacgtccgtcagagatagcactgaccg 513
             |||||||| ||||| || |  ||||| || |||||||| |||| ||| |||||||| ||
Sbjct: 1318 agcctgtgggttctttggcactggaaatcgggtgacgtcagtcaaagacagcactgatcg 1259

                                                                        
Query: 514  taatctgtcttttacttgctcaatagtgattccggat------gccgcatcttcggacaa 567
             || || ||| |||||||||||||||||||||| |||      |||   ||||| | |||
Sbjct: 1258 caacctctctcttacttgctcaatagtgattcctgatttctgggccatgtcttctgtcaa 1199

                                                                        
Query: 568  agaagttgcatctttagctaatgctgctgcatcttctctcagtgcttcccaagctgtggc 627
            ||||||| | ||||  || |||| |||||||||||  |||| ||| ||||||||||||||
Sbjct: 1198 agaagttacgtcttgggccaatgttgctgcatctttcctcaatgcatcccaagctgtggc 1139

                                                                        
Query: 628  atgtctgtaaagtccttcacagaaaggtaccacagcagaatgtggagcaagaaatggtag 687
            ||| ||||| || || ||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 1138 atgcctgtagagcccgtcacagaaaggcaccacagcagaatgcggagcaagaaatggcag 1079

                                                                        
Query: 688  tgtggcaattggcgtaggatgcaaggatcctaccattgcagcatgtacgccacccatgct 747
             || |||||||| || || ||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 1078 cgtagcaattggtgttgggtgcaaggatccaaccattgcagcatgtacaccacccatgct 1019

                               
Query: 748  gagcccacatatgcccatc 766
            |||||| ||||||||||||
Sbjct: 1018 gagcccgcatatgcccatc 1000



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  224 bits (113), Expect = 3e-55
 Identities = 265/316 (83%), Gaps = 6/316 (1%)
 Strand = Plus / Plus

                                                                           
Query: 432     ccgttgcaccaacaaaaatgacggcctgtggattcttcggtaggggaaaccgagtgacgt 491
               |||||||||||||||||||||| |||||||| ||||| || |  ||||| ||||||||||
Sbjct: 5325328 ccgttgcaccaacaaaaatgacagcctgtgggttctttggcactggaaatcgagtgacgt 5325387

                                                                           
Query: 492     ccgtcagagatagcactgaccgtaatctgtcttttacttgctcaatagtgattccggat- 550
               | |||| ||| |||||||| || || || ||| |||||||||||||||||||||| ||| 
Sbjct: 5325388 cagtcaaagacagcactgatcgcaacctctctcttacttgctcaatagtgattcctgatt 5325447

                                                                           
Query: 551     -----gccgcatcttcggacaaagaagttgcatctttagctaatgctgctgcatcttctc 605
                    |||   ||||| | |||||||||| | ||||  || |||| |||||||||||  |
Sbjct: 5325448 tctgggccatgtcttctgtcaaagaagttacgtcttgggccaatgttgctgcatctttcc 5325507

                                                                           
Query: 606     tcagtgcttcccaagctgtggcatgtctgtaaagtccttcacagaaaggtaccacagcag 665
               ||| ||| ||||||||||||||||| ||||| || || ||||||||||| ||||||||||
Sbjct: 5325508 tcaatgcatcccaagctgtggcatgcctgtagagcccgtcacagaaaggcaccacagcag 5325567

                                                                           
Query: 666     aatgtggagcaagaaatggtagtgtggcaattggcgtaggatgcaaggatcctaccattg 725
               |||| |||||||||||||| || || |||||||| || || ||||||||||| |||||||
Sbjct: 5325568 aatgcggagcaagaaatggcagcgtagcaattggtgttgggtgcaaggatccaaccattg 5325627

                               
Query: 726     cagcatgtacgccacc 741
               |||||||||| |||||
Sbjct: 5325628 cagcatgtacaccacc 5325643



 Score =  105 bits (53), Expect = 2e-19
 Identities = 110/129 (85%)
 Strand = Plus / Plus

                                                                           
Query: 274     ctgttataatctgtcaagggcatcgacgatggccttgcgaaacgagtcgttgtggagtaa 333
               |||||||| ||| ||||| ||||| || |||||||||||||||| |||||||||||| ||
Sbjct: 5324804 ctgttatagtctatcaagagcatcaacaatggccttgcgaaacgcgtcgttgtggaggaa 5324863

                                                                           
Query: 334     aaaagaggacacatggcctcccatcacccaccggacttctgagcccggccatgccttctg 393
               ||| || || || || |||||  | ||||||||||| ||||| || ||||||||||| ||
Sbjct: 5324864 aaacgacgatacgtgccctccggttacccaccggacctctgaacctggccatgccttttg 5324923

                        
Query: 394     gagctccat 402
               |||||||||
Sbjct: 5324924 gagctccat 5324932



 Score = 48.1 bits (24), Expect = 0.043
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 739     acccatgctgagcccacatatgcccatc 766
               ||||||||||||||| ||||||||||||
Sbjct: 5326074 acccatgctgagcccgcatatgcccatc 5326101



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>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1225_F07
          Length = 142772

 Score =  224 bits (113), Expect = 3e-55
 Identities = 265/316 (83%), Gaps = 6/316 (1%)
 Strand = Plus / Plus

                                                                         
Query: 432   ccgttgcaccaacaaaaatgacggcctgtggattcttcggtaggggaaaccgagtgacgt 491
             |||||||||||||||||||||| |||||||| ||||| || |  ||||| ||||||||||
Sbjct: 51631 ccgttgcaccaacaaaaatgacagcctgtgggttctttggcactggaaatcgagtgacgt 51690

                                                                         
Query: 492   ccgtcagagatagcactgaccgtaatctgtcttttacttgctcaatagtgattccggat- 550
             | |||| ||| |||||||| || || || ||| |||||||||||||||||||||| ||| 
Sbjct: 51691 cagtcaaagacagcactgatcgcaacctctctcttacttgctcaatagtgattcctgatt 51750

                                                                         
Query: 551   -----gccgcatcttcggacaaagaagttgcatctttagctaatgctgctgcatcttctc 605
                  |||   ||||| | |||||||||| | ||||  || |||| |||||||||||  |
Sbjct: 51751 tctgggccatgtcttctgtcaaagaagttacgtcttgggccaatgttgctgcatctttcc 51810

                                                                         
Query: 606   tcagtgcttcccaagctgtggcatgtctgtaaagtccttcacagaaaggtaccacagcag 665
             ||| ||| ||||||||||||||||| ||||| || || ||||||||||| ||||||||||
Sbjct: 51811 tcaatgcatcccaagctgtggcatgcctgtagagcccgtcacagaaaggcaccacagcag 51870

                                                                         
Query: 666   aatgtggagcaagaaatggtagtgtggcaattggcgtaggatgcaaggatcctaccattg 725
             |||| |||||||||||||| || || |||||||| || || ||||||||||| |||||||
Sbjct: 51871 aatgcggagcaagaaatggcagcgtagcaattggtgttgggtgcaaggatccaaccattg 51930

                             
Query: 726   cagcatgtacgccacc 741
             |||||||||| |||||
Sbjct: 51931 cagcatgtacaccacc 51946



 Score =  105 bits (53), Expect = 2e-19
 Identities = 110/129 (85%)
 Strand = Plus / Plus

                                                                         
Query: 274   ctgttataatctgtcaagggcatcgacgatggccttgcgaaacgagtcgttgtggagtaa 333
             |||||||| ||| ||||| ||||| || |||||||||||||||| |||||||||||| ||
Sbjct: 51107 ctgttatagtctatcaagagcatcaacaatggccttgcgaaacgcgtcgttgtggaggaa 51166

                                                                         
Query: 334   aaaagaggacacatggcctcccatcacccaccggacttctgagcccggccatgccttctg 393
             ||| || || || || |||||  | ||||||||||| ||||| || ||||||||||| ||
Sbjct: 51167 aaacgacgatacgtgccctccggttacccaccggacctctgaacctggccatgccttttg 51226

                      
Query: 394   gagctccat 402
             |||||||||
Sbjct: 51227 gagctccat 51235



 Score = 48.1 bits (24), Expect = 0.043
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 739   acccatgctgagcccacatatgcccatc 766
             ||||||||||||||| ||||||||||||
Sbjct: 52377 acccatgctgagcccgcatatgcccatc 52404



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>gb|BT018604.1| Zea mays clone EL01N0450B01.d mRNA sequence
          Length = 1450

 Score =  202 bits (102), Expect = 1e-48
 Identities = 207/242 (85%)
 Strand = Plus / Minus

                                                                        
Query: 275  tgttataatctgtcaagggcatcgacgatggccttgcgaaacgagtcgttgtggagtaaa 334
            ||||| ||||| |||||||| ||||||||||||||||| || |  ||||||||||| || 
Sbjct: 1123 tgttacaatctatcaagggcgtcgacgatggccttgcggaatgcatcgttgtggaggaag 1064

                                                                        
Query: 335  aaagaggacacatggcctcccatcacccaccggacttctgagcccggccatgccttctgg 394
            |||||||| |||||||| ||  | ||||||||||| |||||||| |||||||||||||||
Sbjct: 1063 aaagaggagacatggccacctgttacccaccggacctctgagcctggccatgccttctgg 1004

                                                                        
Query: 395  agctccatgaccgagtgtctaggaatataaccgtcatccgttgcaccaacaaaaatgacg 454
            |||||||| || || ||||| ||||||||||| || ||||||||||||||||| ||||| 
Sbjct: 1003 agctccatcactgaatgtctgggaatataaccatcgtccgttgcaccaacaaagatgacc 944

                                                                        
Query: 455  gcctgtggattcttcggtaggggaaaccgagtgacgtccgtcagagatagcactgaccgt 514
            |||||||| ||||| || |  ||||| |||||||| || |||| ||| | ||||||||||
Sbjct: 943  gcctgtgggttctttgggactggaaatcgagtgacatcagtcaaagacaacactgaccgt 884

              
Query: 515  aa 516
            ||
Sbjct: 883  aa 882



 Score =  165 bits (83), Expect = 3e-37
 Identities = 165/191 (86%), Gaps = 1/191 (0%)
 Strand = Plus / Minus

                                                                       
Query: 576 catctttagctaatgctgctgcatcttctctcagtgcttcccaagctgtggcatgtctgt 635
           |||||| || |||| |||| |||| || |||||  || |||||||||||||| | | |||
Sbjct: 816 catcttgagttaatactgcagcatgttttctcaaagcgtcccaagctgtggcgtatttgt 757

                                                                       
Query: 636 aaagtccttcacagaaaggtaccacagcagaatgtggagcaagaaatggtagtgtggcaa 695
           | |   ||||||||||||||||||||||||| |||| ||| |||||||| ||||||||||
Sbjct: 756 agaacgcttcacagaaaggtaccacagcagagtgtg-agcgagaaatggcagtgtggcaa 698

                                                                       
Query: 696 ttggcgtaggatgcaaggatcctaccattgcagcatgtacgccacccatgctgagcccac 755
            ||| |||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 697 ctggagtaggatgcagggatcccaccatcgcagcatgtactccacccatgctgagcccac 638

                      
Query: 756 atatgcccatc 766
           |||||||||||
Sbjct: 637 atatgcccatc 627



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>gb|AY112416.1| Zea mays CL8338_1 mRNA sequence
          Length = 827

 Score =  147 bits (74), Expect = 6e-32
 Identities = 137/158 (86%)
 Strand = Plus / Plus

                                                                       
Query: 359 acccaccggacttctgagcccggccatgccttctggagctccatgaccgagtgtctagga 418
           ||||||||||| |||||||| ||||||||||||||||||||||| || || ||||| |||
Sbjct: 489 acccaccggacctctgagcctggccatgccttctggagctccatcactgaatgtctggga 548

                                                                       
Query: 419 atataaccgtcatccgttgcaccaacaaaaatgacggcctgtggattcttcggtagggga 478
           |||||||| || ||||||||||||||||| ||||| |||||||| ||||| || |  |||
Sbjct: 549 atataaccatcgtccgttgcaccaacaaagatgaccgcctgtgggttctttgggactgga 608

                                                 
Query: 479 aaccgagtgacgtccgtcagagatagcactgaccgtaa 516
           || |||||||| || |||| ||| | ||||||||||||
Sbjct: 609 aatcgagtgacatcagtcaaagacaacactgaccgtaa 646



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 93/109 (85%)
 Strand = Plus / Plus

                                                                       
Query: 576 catctttagctaatgctgctgcatcttctctcagtgcttcccaagctgtggcatgtctgt 635
           |||||| || |||| |||| ||||||| |||||  || |||||||||||||| | | |||
Sbjct: 712 catcttgagttaatactgcagcatcttttctcaaagcgtcccaagctgtggcgtatttgt 771

                                                            
Query: 636 aaagtccttcacagaaaggtaccacagcagaatgtggagcaagaaatgg 684
           | |  |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 772 agaccccttcacagaaaggtaccacagcagagtgtggagcgagaaatgg 820



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 275 tgttataatctgtcaagggcatcgacgatggccttgcg 312
           ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 405 tgttacaatctatcaagggcgtcgacgatggccttgcg 442



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>gb|AY107594.1| Zea mays PCO118980 mRNA sequence
          Length = 1045

 Score =  111 bits (56), Expect = 3e-21
 Identities = 107/124 (86%), Gaps = 1/124 (0%)
 Strand = Plus / Minus

                                                                       
Query: 643 ttcacagaaaggtaccacagcagaatgtggagcaagaaatggtagtgtggcaattggcgt 702
           ||||||||||||| || ||||||| | |||| | |||| ||  |||||||||| ||| ||
Sbjct: 924 ttcacagaaaggtcccncagcagagtttggancgagaa-tgccagtgtggcaactggagt 866

                                                                       
Query: 703 aggatgcaaggatcctaccattgcagcatgtacgccacccatgctgagcccacatatgcc 762
           |||||||| |  ||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 865 aggatgcaggnntcccaccatcgcagcatgtactccacccatgctgagcccacatatgcc 806

               
Query: 763 catc 766
           ||||
Sbjct: 805 catc 802



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>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome
          Length = 452528

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                         
Query: 78    atgggccaacctctccactaactttgacactcactgcacctcaatctaccacttgtttaa 137
             ||||||||||||||||| |||  |||| ||||||||||||||  ||||||||||||||||
Sbjct: 88330 atgggccaacctctccattaatattgatactcactgcacctccttctaccacttgtttaa 88389

                  
Query: 138   tccaa 142
             |||||
Sbjct: 88390 tccaa 88394



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>gb|AY359555.1| Callinectes sapidus clone CSA-016 microsatellite sequence
          Length = 254

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 260 acacaagaatcaccctgttata 281
           ||||||||||||||||||||||
Sbjct: 75  acacaagaatcaccctgttata 54



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>gb|AC103371.9| Mus musculus chromosome 5, clone RP24-399A15, complete sequence
          Length = 122682

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 55    ttacaaatgtgattctacagc 75
             |||||||||||||||||||||
Sbjct: 91989 ttacaaatgtgattctacagc 92009



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>gb|AC113203.10| Mus musculus chromosome 5, clone RP23-276C23, complete sequence
          Length = 201674

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 55    ttacaaatgtgattctacagc 75
             |||||||||||||||||||||
Sbjct: 29041 ttacaaatgtgattctacagc 29061



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>gb|AC158512.2| Mus musculus BAC clone RP24-319O6 from chromosome 9, complete sequence
          Length = 171723

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 443   acaaaaatgacggcctgtgga 463
             |||||||||||||||||||||
Sbjct: 25159 acaaaaatgacggcctgtgga 25139



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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 521     tcttttacttgctcaatagtg 541
               |||||||||||||||||||||
Sbjct: 1153207 tcttttacttgctcaatagtg 1153187



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>dbj|AK019319.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length
           enriched library, clone:2900019G12
           product:apolipoprotein E, full insert sequence
          Length = 844

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 443 acaaaaatgacggcctgtgga 463
           |||||||||||||||||||||
Sbjct: 7   acaaaaatgacggcctgtgga 27



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>gb|AC108805.15| Mus musculus chromosome 9, clone RP23-226G13, complete sequence
          Length = 242531

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 443    acaaaaatgacggcctgtgga 463
              |||||||||||||||||||||
Sbjct: 103930 acaaaaatgacggcctgtgga 103950



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>emb|AL672218.9| Mouse DNA sequence from clone RP24-BM212H6 on chromosome 11, complete
             sequence
          Length = 196938

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 55    ttacaaatgtgattctacagc 75
             |||||||||||||||||||||
Sbjct: 65178 ttacaaatgtgattctacagc 65198


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,485,271
Number of Sequences: 3902068
Number of extensions: 5485271
Number of successful extensions: 98295
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98215
Number of HSP's gapped (non-prelim): 77
length of query: 766
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 743
effective length of database: 17,143,297,704
effective search space: 12737470194072
effective search space used: 12737470194072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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