Clone Name | rbasd19i12 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_464451.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1650 Score = 365 bits (184), Expect = 1e-97 Identities = 420/499 (84%), Gaps = 6/499 (1%) Strand = Plus / Minus Query: 274 ctgttataatctgtcaagggcatcgacgatggccttgcgaaacgagtcgttgtggagtaa 333 |||||||| ||| ||||| ||||| || |||||||||||||||| |||||||||||| || Sbjct: 1427 ctgttatagtctatcaagagcatcaacaatggccttgcgaaacgcgtcgttgtggaggaa 1368 Query: 334 aaaagaggacacatggcctcccatcacccaccggacttctgagcccggccatgccttctg 393 ||| || || || || ||||| | ||||||||||| ||||| || ||||||||||| || Sbjct: 1367 aaacgacgatacgtgccctccggttacccaccggacctctgaacctggccatgccttttg 1308 Query: 394 gagctccatgaccgagtgtctaggaatataaccgtcatccgttgcaccaacaaaaatgac 453 ||||||||| | ||| ||| | || || || ||||||||||||||||||||||||||||| Sbjct: 1307 gagctccattatcgaatgtttggggatgtagccgtcatccgttgcaccaacaaaaatgac 1248 Query: 454 ggcctgtggattcttcggtaggggaaaccgagtgacgtccgtcagagatagcactgaccg 513 |||||||| ||||| || | ||||| ||||||||||| |||| ||| |||||||| || Sbjct: 1247 agcctgtgggttctttggcactggaaatcgagtgacgtcagtcaaagacagcactgatcg 1188 Query: 514 taatctgtcttttacttgctcaatagtgattccggat------gccgcatcttcggacaa 567 || || ||| |||||||||||||||||||||| ||| ||| ||||| | ||| Sbjct: 1187 caacctctctcttacttgctcaatagtgattcctgatttctgggccatgtcttctgtcaa 1128 Query: 568 agaagttgcatctttagctaatgctgctgcatcttctctcagtgcttcccaagctgtggc 627 ||||||| | |||| || |||| ||||||||||| |||| ||| |||||||||||||| Sbjct: 1127 agaagttacgtcttgggccaatgttgctgcatctttcctcaatgcatcccaagctgtggc 1068 Query: 628 atgtctgtaaagtccttcacagaaaggtaccacagcagaatgtggagcaagaaatggtag 687 ||| ||||| || || ||||||||||| |||||||||||||| |||||||||||||| || Sbjct: 1067 atgcctgtagagcccgtcacagaaaggcaccacagcagaatgcggagcaagaaatggcag 1008 Query: 688 tgtggcaattggcgtaggatgcaaggatcctaccattgcagcatgtacgccacccatgct 747 || |||||||| || || ||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 1007 cgtagcaattggtgttgggtgcaaggatccaaccattgcagcatgtacaccacccatgct 948 Query: 748 gagcccacatatgcccatc 766 |||||| |||||||||||| Sbjct: 947 gagcccgcatatgcccatc 929
>ref|XM_506745.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1225_F07.7 mRNA Length = 1735 Score = 365 bits (184), Expect = 1e-97 Identities = 420/499 (84%), Gaps = 6/499 (1%) Strand = Plus / Minus Query: 274 ctgttataatctgtcaagggcatcgacgatggccttgcgaaacgagtcgttgtggagtaa 333 |||||||| ||| ||||| ||||| || |||||||||||||||| |||||||||||| || Sbjct: 1498 ctgttatagtctatcaagagcatcaacaatggccttgcgaaacgcgtcgttgtggaggaa 1439 Query: 334 aaaagaggacacatggcctcccatcacccaccggacttctgagcccggccatgccttctg 393 ||| || || || || ||||| | ||||||||||| ||||| || ||||||||||| || Sbjct: 1438 aaacgacgatacgtgccctccggttacccaccggacctctgaacctggccatgccttttg 1379 Query: 394 gagctccatgaccgagtgtctaggaatataaccgtcatccgttgcaccaacaaaaatgac 453 ||||||||| | ||| ||| | || || || ||||||||||||||||||||||||||||| Sbjct: 1378 gagctccattatcgaatgtttggggatgtagccgtcatccgttgcaccaacaaaaatgac 1319 Query: 454 ggcctgtggattcttcggtaggggaaaccgagtgacgtccgtcagagatagcactgaccg 513 |||||||| ||||| || | ||||| ||||||||||| |||| ||| |||||||| || Sbjct: 1318 agcctgtgggttctttggcactggaaatcgagtgacgtcagtcaaagacagcactgatcg 1259 Query: 514 taatctgtcttttacttgctcaatagtgattccggat------gccgcatcttcggacaa 567 || || ||| |||||||||||||||||||||| ||| ||| ||||| | ||| Sbjct: 1258 caacctctctcttacttgctcaatagtgattcctgatttctgggccatgtcttctgtcaa 1199 Query: 568 agaagttgcatctttagctaatgctgctgcatcttctctcagtgcttcccaagctgtggc 627 ||||||| | |||| || |||| ||||||||||| |||| ||| |||||||||||||| Sbjct: 1198 agaagttacgtcttgggccaatgttgctgcatctttcctcaatgcatcccaagctgtggc 1139 Query: 628 atgtctgtaaagtccttcacagaaaggtaccacagcagaatgtggagcaagaaatggtag 687 ||| ||||| || || ||||||||||| |||||||||||||| |||||||||||||| || Sbjct: 1138 atgcctgtagagcccgtcacagaaaggcaccacagcagaatgcggagcaagaaatggcag 1079 Query: 688 tgtggcaattggcgtaggatgcaaggatcctaccattgcagcatgtacgccacccatgct 747 || |||||||| || || ||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 1078 cgtagcaattggtgttgggtgcaaggatccaaccattgcagcatgtacaccacccatgct 1019 Query: 748 gagcccacatatgcccatc 766 |||||| |||||||||||| Sbjct: 1018 gagcccgcatatgcccatc 1000
>dbj|AK102395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092H01, full insert sequence Length = 1650 Score = 365 bits (184), Expect = 1e-97 Identities = 420/499 (84%), Gaps = 6/499 (1%) Strand = Plus / Minus Query: 274 ctgttataatctgtcaagggcatcgacgatggccttgcgaaacgagtcgttgtggagtaa 333 |||||||| ||| ||||| ||||| || |||||||||||||||| |||||||||||| || Sbjct: 1427 ctgttatagtctatcaagagcatcaacaatggccttgcgaaacgcgtcgttgtggaggaa 1368 Query: 334 aaaagaggacacatggcctcccatcacccaccggacttctgagcccggccatgccttctg 393 ||| || || || || ||||| | ||||||||||| ||||| || ||||||||||| || Sbjct: 1367 aaacgacgatacgtgccctccggttacccaccggacctctgaacctggccatgccttttg 1308 Query: 394 gagctccatgaccgagtgtctaggaatataaccgtcatccgttgcaccaacaaaaatgac 453 ||||||||| | ||| ||| | || || || ||||||||||||||||||||||||||||| Sbjct: 1307 gagctccattatcgaatgtttggggatgtagccgtcatccgttgcaccaacaaaaatgac 1248 Query: 454 ggcctgtggattcttcggtaggggaaaccgagtgacgtccgtcagagatagcactgaccg 513 |||||||| ||||| || | ||||| ||||||||||| |||| ||| |||||||| || Sbjct: 1247 agcctgtgggttctttggcactggaaatcgagtgacgtcagtcaaagacagcactgatcg 1188 Query: 514 taatctgtcttttacttgctcaatagtgattccggat------gccgcatcttcggacaa 567 || || ||| |||||||||||||||||||||| ||| ||| ||||| | ||| Sbjct: 1187 caacctctctcttacttgctcaatagtgattcctgatttctgggccatgtcttctgtcaa 1128 Query: 568 agaagttgcatctttagctaatgctgctgcatcttctctcagtgcttcccaagctgtggc 627 ||||||| | |||| || |||| ||||||||||| |||| ||| |||||||||||||| Sbjct: 1127 agaagttacgtcttgggccaatgttgctgcatctttcctcaatgcatcccaagctgtggc 1068 Query: 628 atgtctgtaaagtccttcacagaaaggtaccacagcagaatgtggagcaagaaatggtag 687 ||| ||||| || || ||||||||||| |||||||||||||| |||||||||||||| || Sbjct: 1067 atgcctgtagagcccgtcacagaaaggcaccacagcagaatgcggagcaagaaatggcag 1008 Query: 688 tgtggcaattggcgtaggatgcaaggatcctaccattgcagcatgtacgccacccatgct 747 || |||||||| || || ||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 1007 cgtagcaattggtgttgggtgcaaggatccaaccattgcagcatgtacaccacccatgct 948 Query: 748 gagcccacatatgcccatc 766 |||||| |||||||||||| Sbjct: 947 gagcccgcatatgcccatc 929
>dbj|AK109481.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-B01, full insert sequence Length = 1735 Score = 357 bits (180), Expect = 3e-95 Identities = 419/499 (83%), Gaps = 6/499 (1%) Strand = Plus / Minus Query: 274 ctgttataatctgtcaagggcatcgacgatggccttgcgaaacgagtcgttgtggagtaa 333 |||||||| ||| ||||| ||||| || |||||||||||||||| |||||||||||| || Sbjct: 1498 ctgttatagtctatcaagagcatcaacaatggccttgcgaaacgcgtcgttgtggaggaa 1439 Query: 334 aaaagaggacacatggcctcccatcacccaccggacttctgagcccggccatgccttctg 393 ||| || || || || ||||| | ||||||||||| ||||| || ||||||||||| || Sbjct: 1438 aaacgacgatacgtgccctccggttacccaccggacctctgaacctggccatgccttttg 1379 Query: 394 gagctccatgaccgagtgtctaggaatataaccgtcatccgttgcaccaacaaaaatgac 453 ||||||||| | ||| ||| | || || || ||||||||||||||||||||||||||||| Sbjct: 1378 gagctccattatcgaatgtttggggatgtagccgtcatccgttgcaccaacaaaaatgac 1319 Query: 454 ggcctgtggattcttcggtaggggaaaccgagtgacgtccgtcagagatagcactgaccg 513 |||||||| ||||| || | ||||| || |||||||| |||| ||| |||||||| || Sbjct: 1318 agcctgtgggttctttggcactggaaatcgggtgacgtcagtcaaagacagcactgatcg 1259 Query: 514 taatctgtcttttacttgctcaatagtgattccggat------gccgcatcttcggacaa 567 || || ||| |||||||||||||||||||||| ||| ||| ||||| | ||| Sbjct: 1258 caacctctctcttacttgctcaatagtgattcctgatttctgggccatgtcttctgtcaa 1199 Query: 568 agaagttgcatctttagctaatgctgctgcatcttctctcagtgcttcccaagctgtggc 627 ||||||| | |||| || |||| ||||||||||| |||| ||| |||||||||||||| Sbjct: 1198 agaagttacgtcttgggccaatgttgctgcatctttcctcaatgcatcccaagctgtggc 1139 Query: 628 atgtctgtaaagtccttcacagaaaggtaccacagcagaatgtggagcaagaaatggtag 687 ||| ||||| || || ||||||||||| |||||||||||||| |||||||||||||| || Sbjct: 1138 atgcctgtagagcccgtcacagaaaggcaccacagcagaatgcggagcaagaaatggcag 1079 Query: 688 tgtggcaattggcgtaggatgcaaggatcctaccattgcagcatgtacgccacccatgct 747 || |||||||| || || ||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 1078 cgtagcaattggtgttgggtgcaaggatccaaccattgcagcatgtacaccacccatgct 1019 Query: 748 gagcccacatatgcccatc 766 |||||| |||||||||||| Sbjct: 1018 gagcccgcatatgcccatc 1000
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 224 bits (113), Expect = 3e-55 Identities = 265/316 (83%), Gaps = 6/316 (1%) Strand = Plus / Plus Query: 432 ccgttgcaccaacaaaaatgacggcctgtggattcttcggtaggggaaaccgagtgacgt 491 |||||||||||||||||||||| |||||||| ||||| || | ||||| |||||||||| Sbjct: 5325328 ccgttgcaccaacaaaaatgacagcctgtgggttctttggcactggaaatcgagtgacgt 5325387 Query: 492 ccgtcagagatagcactgaccgtaatctgtcttttacttgctcaatagtgattccggat- 550 | |||| ||| |||||||| || || || ||| |||||||||||||||||||||| ||| Sbjct: 5325388 cagtcaaagacagcactgatcgcaacctctctcttacttgctcaatagtgattcctgatt 5325447 Query: 551 -----gccgcatcttcggacaaagaagttgcatctttagctaatgctgctgcatcttctc 605 ||| ||||| | |||||||||| | |||| || |||| ||||||||||| | Sbjct: 5325448 tctgggccatgtcttctgtcaaagaagttacgtcttgggccaatgttgctgcatctttcc 5325507 Query: 606 tcagtgcttcccaagctgtggcatgtctgtaaagtccttcacagaaaggtaccacagcag 665 ||| ||| ||||||||||||||||| ||||| || || ||||||||||| |||||||||| Sbjct: 5325508 tcaatgcatcccaagctgtggcatgcctgtagagcccgtcacagaaaggcaccacagcag 5325567 Query: 666 aatgtggagcaagaaatggtagtgtggcaattggcgtaggatgcaaggatcctaccattg 725 |||| |||||||||||||| || || |||||||| || || ||||||||||| ||||||| Sbjct: 5325568 aatgcggagcaagaaatggcagcgtagcaattggtgttgggtgcaaggatccaaccattg 5325627 Query: 726 cagcatgtacgccacc 741 |||||||||| ||||| Sbjct: 5325628 cagcatgtacaccacc 5325643 Score = 105 bits (53), Expect = 2e-19 Identities = 110/129 (85%) Strand = Plus / Plus Query: 274 ctgttataatctgtcaagggcatcgacgatggccttgcgaaacgagtcgttgtggagtaa 333 |||||||| ||| ||||| ||||| || |||||||||||||||| |||||||||||| || Sbjct: 5324804 ctgttatagtctatcaagagcatcaacaatggccttgcgaaacgcgtcgttgtggaggaa 5324863 Query: 334 aaaagaggacacatggcctcccatcacccaccggacttctgagcccggccatgccttctg 393 ||| || || || || ||||| | ||||||||||| ||||| || ||||||||||| || Sbjct: 5324864 aaacgacgatacgtgccctccggttacccaccggacctctgaacctggccatgccttttg 5324923 Query: 394 gagctccat 402 ||||||||| Sbjct: 5324924 gagctccat 5324932 Score = 48.1 bits (24), Expect = 0.043 Identities = 27/28 (96%) Strand = Plus / Plus Query: 739 acccatgctgagcccacatatgcccatc 766 ||||||||||||||| |||||||||||| Sbjct: 5326074 acccatgctgagcccgcatatgcccatc 5326101
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 224 bits (113), Expect = 3e-55 Identities = 265/316 (83%), Gaps = 6/316 (1%) Strand = Plus / Plus Query: 432 ccgttgcaccaacaaaaatgacggcctgtggattcttcggtaggggaaaccgagtgacgt 491 |||||||||||||||||||||| |||||||| ||||| || | ||||| |||||||||| Sbjct: 51631 ccgttgcaccaacaaaaatgacagcctgtgggttctttggcactggaaatcgagtgacgt 51690 Query: 492 ccgtcagagatagcactgaccgtaatctgtcttttacttgctcaatagtgattccggat- 550 | |||| ||| |||||||| || || || ||| |||||||||||||||||||||| ||| Sbjct: 51691 cagtcaaagacagcactgatcgcaacctctctcttacttgctcaatagtgattcctgatt 51750 Query: 551 -----gccgcatcttcggacaaagaagttgcatctttagctaatgctgctgcatcttctc 605 ||| ||||| | |||||||||| | |||| || |||| ||||||||||| | Sbjct: 51751 tctgggccatgtcttctgtcaaagaagttacgtcttgggccaatgttgctgcatctttcc 51810 Query: 606 tcagtgcttcccaagctgtggcatgtctgtaaagtccttcacagaaaggtaccacagcag 665 ||| ||| ||||||||||||||||| ||||| || || ||||||||||| |||||||||| Sbjct: 51811 tcaatgcatcccaagctgtggcatgcctgtagagcccgtcacagaaaggcaccacagcag 51870 Query: 666 aatgtggagcaagaaatggtagtgtggcaattggcgtaggatgcaaggatcctaccattg 725 |||| |||||||||||||| || || |||||||| || || ||||||||||| ||||||| Sbjct: 51871 aatgcggagcaagaaatggcagcgtagcaattggtgttgggtgcaaggatccaaccattg 51930 Query: 726 cagcatgtacgccacc 741 |||||||||| ||||| Sbjct: 51931 cagcatgtacaccacc 51946 Score = 105 bits (53), Expect = 2e-19 Identities = 110/129 (85%) Strand = Plus / Plus Query: 274 ctgttataatctgtcaagggcatcgacgatggccttgcgaaacgagtcgttgtggagtaa 333 |||||||| ||| ||||| ||||| || |||||||||||||||| |||||||||||| || Sbjct: 51107 ctgttatagtctatcaagagcatcaacaatggccttgcgaaacgcgtcgttgtggaggaa 51166 Query: 334 aaaagaggacacatggcctcccatcacccaccggacttctgagcccggccatgccttctg 393 ||| || || || || ||||| | ||||||||||| ||||| || ||||||||||| || Sbjct: 51167 aaacgacgatacgtgccctccggttacccaccggacctctgaacctggccatgccttttg 51226 Query: 394 gagctccat 402 ||||||||| Sbjct: 51227 gagctccat 51235 Score = 48.1 bits (24), Expect = 0.043 Identities = 27/28 (96%) Strand = Plus / Plus Query: 739 acccatgctgagcccacatatgcccatc 766 ||||||||||||||| |||||||||||| Sbjct: 52377 acccatgctgagcccgcatatgcccatc 52404
>gb|BT018604.1| Zea mays clone EL01N0450B01.d mRNA sequence Length = 1450 Score = 202 bits (102), Expect = 1e-48 Identities = 207/242 (85%) Strand = Plus / Minus Query: 275 tgttataatctgtcaagggcatcgacgatggccttgcgaaacgagtcgttgtggagtaaa 334 ||||| ||||| |||||||| ||||||||||||||||| || | ||||||||||| || Sbjct: 1123 tgttacaatctatcaagggcgtcgacgatggccttgcggaatgcatcgttgtggaggaag 1064 Query: 335 aaagaggacacatggcctcccatcacccaccggacttctgagcccggccatgccttctgg 394 |||||||| |||||||| || | ||||||||||| |||||||| ||||||||||||||| Sbjct: 1063 aaagaggagacatggccacctgttacccaccggacctctgagcctggccatgccttctgg 1004 Query: 395 agctccatgaccgagtgtctaggaatataaccgtcatccgttgcaccaacaaaaatgacg 454 |||||||| || || ||||| ||||||||||| || ||||||||||||||||| ||||| Sbjct: 1003 agctccatcactgaatgtctgggaatataaccatcgtccgttgcaccaacaaagatgacc 944 Query: 455 gcctgtggattcttcggtaggggaaaccgagtgacgtccgtcagagatagcactgaccgt 514 |||||||| ||||| || | ||||| |||||||| || |||| ||| | |||||||||| Sbjct: 943 gcctgtgggttctttgggactggaaatcgagtgacatcagtcaaagacaacactgaccgt 884 Query: 515 aa 516 || Sbjct: 883 aa 882 Score = 165 bits (83), Expect = 3e-37 Identities = 165/191 (86%), Gaps = 1/191 (0%) Strand = Plus / Minus Query: 576 catctttagctaatgctgctgcatcttctctcagtgcttcccaagctgtggcatgtctgt 635 |||||| || |||| |||| |||| || ||||| || |||||||||||||| | | ||| Sbjct: 816 catcttgagttaatactgcagcatgttttctcaaagcgtcccaagctgtggcgtatttgt 757 Query: 636 aaagtccttcacagaaaggtaccacagcagaatgtggagcaagaaatggtagtgtggcaa 695 | | ||||||||||||||||||||||||| |||| ||| |||||||| |||||||||| Sbjct: 756 agaacgcttcacagaaaggtaccacagcagagtgtg-agcgagaaatggcagtgtggcaa 698 Query: 696 ttggcgtaggatgcaaggatcctaccattgcagcatgtacgccacccatgctgagcccac 755 ||| |||||||||| |||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 697 ctggagtaggatgcagggatcccaccatcgcagcatgtactccacccatgctgagcccac 638 Query: 756 atatgcccatc 766 ||||||||||| Sbjct: 637 atatgcccatc 627
>gb|AY112416.1| Zea mays CL8338_1 mRNA sequence Length = 827 Score = 147 bits (74), Expect = 6e-32 Identities = 137/158 (86%) Strand = Plus / Plus Query: 359 acccaccggacttctgagcccggccatgccttctggagctccatgaccgagtgtctagga 418 ||||||||||| |||||||| ||||||||||||||||||||||| || || ||||| ||| Sbjct: 489 acccaccggacctctgagcctggccatgccttctggagctccatcactgaatgtctggga 548 Query: 419 atataaccgtcatccgttgcaccaacaaaaatgacggcctgtggattcttcggtagggga 478 |||||||| || ||||||||||||||||| ||||| |||||||| ||||| || | ||| Sbjct: 549 atataaccatcgtccgttgcaccaacaaagatgaccgcctgtgggttctttgggactgga 608 Query: 479 aaccgagtgacgtccgtcagagatagcactgaccgtaa 516 || |||||||| || |||| ||| | |||||||||||| Sbjct: 609 aatcgagtgacatcagtcaaagacaacactgaccgtaa 646 Score = 89.7 bits (45), Expect = 1e-14 Identities = 93/109 (85%) Strand = Plus / Plus Query: 576 catctttagctaatgctgctgcatcttctctcagtgcttcccaagctgtggcatgtctgt 635 |||||| || |||| |||| ||||||| ||||| || |||||||||||||| | | ||| Sbjct: 712 catcttgagttaatactgcagcatcttttctcaaagcgtcccaagctgtggcgtatttgt 771 Query: 636 aaagtccttcacagaaaggtaccacagcagaatgtggagcaagaaatgg 684 | | |||||||||||||||||||||||||| |||||||| |||||||| Sbjct: 772 agaccccttcacagaaaggtaccacagcagagtgtggagcgagaaatgg 820 Score = 52.0 bits (26), Expect = 0.003 Identities = 35/38 (92%) Strand = Plus / Plus Query: 275 tgttataatctgtcaagggcatcgacgatggccttgcg 312 ||||| ||||| |||||||| ||||||||||||||||| Sbjct: 405 tgttacaatctatcaagggcgtcgacgatggccttgcg 442
>gb|AY107594.1| Zea mays PCO118980 mRNA sequence Length = 1045 Score = 111 bits (56), Expect = 3e-21 Identities = 107/124 (86%), Gaps = 1/124 (0%) Strand = Plus / Minus Query: 643 ttcacagaaaggtaccacagcagaatgtggagcaagaaatggtagtgtggcaattggcgt 702 ||||||||||||| || ||||||| | |||| | |||| || |||||||||| ||| || Sbjct: 924 ttcacagaaaggtcccncagcagagtttggancgagaa-tgccagtgtggcaactggagt 866 Query: 703 aggatgcaaggatcctaccattgcagcatgtacgccacccatgctgagcccacatatgcc 762 |||||||| | ||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 865 aggatgcaggnntcccaccatcgcagcatgtactccacccatgctgagcccacatatgcc 806 Query: 763 catc 766 |||| Sbjct: 805 catc 802
>dbj|AP008982.1| Triticum aestivum mitochondrial DNA, complete genome Length = 452528 Score = 81.8 bits (41), Expect = 3e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 78 atgggccaacctctccactaactttgacactcactgcacctcaatctaccacttgtttaa 137 ||||||||||||||||| ||| |||| |||||||||||||| |||||||||||||||| Sbjct: 88330 atgggccaacctctccattaatattgatactcactgcacctccttctaccacttgtttaa 88389 Query: 138 tccaa 142 ||||| Sbjct: 88390 tccaa 88394
>gb|AY359555.1| Callinectes sapidus clone CSA-016 microsatellite sequence Length = 254 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Minus Query: 260 acacaagaatcaccctgttata 281 |||||||||||||||||||||| Sbjct: 75 acacaagaatcaccctgttata 54
>gb|AC103371.9| Mus musculus chromosome 5, clone RP24-399A15, complete sequence Length = 122682 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 ttacaaatgtgattctacagc 75 ||||||||||||||||||||| Sbjct: 91989 ttacaaatgtgattctacagc 92009
>gb|AC113203.10| Mus musculus chromosome 5, clone RP23-276C23, complete sequence Length = 201674 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 ttacaaatgtgattctacagc 75 ||||||||||||||||||||| Sbjct: 29041 ttacaaatgtgattctacagc 29061
>gb|AC158512.2| Mus musculus BAC clone RP24-319O6 from chromosome 9, complete sequence Length = 171723 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 acaaaaatgacggcctgtgga 463 ||||||||||||||||||||| Sbjct: 25159 acaaaaatgacggcctgtgga 25139
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 521 tcttttacttgctcaatagtg 541 ||||||||||||||||||||| Sbjct: 1153207 tcttttacttgctcaatagtg 1153187
>dbj|AK019319.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900019G12 product:apolipoprotein E, full insert sequence Length = 844 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 acaaaaatgacggcctgtgga 463 ||||||||||||||||||||| Sbjct: 7 acaaaaatgacggcctgtgga 27
>gb|AC108805.15| Mus musculus chromosome 9, clone RP23-226G13, complete sequence Length = 242531 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 acaaaaatgacggcctgtgga 463 ||||||||||||||||||||| Sbjct: 103930 acaaaaatgacggcctgtgga 103950
>emb|AL672218.9| Mouse DNA sequence from clone RP24-BM212H6 on chromosome 11, complete sequence Length = 196938 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 ttacaaatgtgattctacagc 75 ||||||||||||||||||||| Sbjct: 65178 ttacaaatgtgattctacagc 65198 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,485,271 Number of Sequences: 3902068 Number of extensions: 5485271 Number of successful extensions: 98295 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98215 Number of HSP's gapped (non-prelim): 77 length of query: 766 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 743 effective length of database: 17,143,297,704 effective search space: 12737470194072 effective search space used: 12737470194072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)