ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd19i10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1C97B2_SOYBN (O48921) Cytochrome P450 97B2 (EC 1.14.-.-) 32 1.2
2VIT2_CHICK (P02845) Vitellogenin-2 precursor (Vitellogenin II) (... 31 2.7
3PANB_BACSU (P52996) 3-methyl-2-oxobutanoate hydroxymethyltransfe... 31 3.5
4RHRE_PEA (Q9S8P4) Rhicadhesin receptor precursor (Germin-like pr... 30 7.9

>C97B2_SOYBN (O48921) Cytochrome P450 97B2 (EC 1.14.-.-)|
          Length = 576

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = +3

Query: 123 STLLTSRETNLHSRRKSGAKVFADHLSLSLPVMLSS 230
           STL T  + NLHSR  S    F  H SLS P  +SS
Sbjct: 7   STLSTVTDANLHSRFHSRLVPFTHHFSLSQPKRISS 42



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>VIT2_CHICK (P02845) Vitellogenin-2 precursor (Vitellogenin II) (Major|
            vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I)
            (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II)
            (LVII); YGP40]
          Length = 1850

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
 Frame = +3

Query: 57   SSAISKEHMLQKAETKNWQGNKSTLLTSRETNLHSRRKSGAKVFADHLSLSLPVMLSSAW 236
            SS+ S  H      + +  G+ S+  +SR  + HS       +  D  S S   +LS  W
Sbjct: 1262 SSSKSSSHHSHSHHSGHLNGSSSSSSSSRSVSHHSHEHHSGHLEDDSSSSSSSSVLSKIW 1321

Query: 237  A*LRSCSMKLEHLMRQELAEA*KGGERHLSR--AQRSEH 347
                    +     RQE  +    G+R  SR  + RS H
Sbjct: 1322 GRHEIYQYRFRSAHRQEFPKRKLPGDRATSRYSSTRSSH 1360



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>PANB_BACSU (P52996) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC|
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
          Length = 277

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = -1

Query: 510 TIGALVTSFSHEVGSLNPGTPQALLQSCATFAAFSCIMEGLNKQQAAMAHTLGGNALTFA 331
           T+G  V    H   ++  G P   + +   F ++    E   K  AA+    G +AL   
Sbjct: 55  TVGVTVADMIHHTKAVKRGAPNTFIVTDMPFMSYHLSKEDTLKNAAAIVQESGADALKLE 114

Query: 330 HGKG 319
            G+G
Sbjct: 115 GGEG 118



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>RHRE_PEA (Q9S8P4) Rhicadhesin receptor precursor (Germin-like protein)|
          Length = 217

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -1

Query: 441 LLQSCATFAAFSCIMEGLNKQQAAMAHTLGGNALTFAHGKGGVLPPFTLP 292
           L++  AT   F  ++ G N Q+    +TLG +     +  GG+ PP T P
Sbjct: 61  LVKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHP 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,790,110
Number of Sequences: 219361
Number of extensions: 1891245
Number of successful extensions: 4922
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4921
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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