ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd19i08 |
|---|---|
| Clone Library Name | barley_pub |
>SNIP_HUMAN (Q9C0H9) p130Cas-associated protein (p140Cap) (SNAP-25-interacting| protein) (SNIP) Length = 1055 Score = 31.2 bits (69), Expect = 1.9 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = -3 Query: 527 PAGDGQDPEAGGHGDHQGRCGPASEDKERRGRDEME*PDRGPRRRSARPGEAPP 366 P D + P+A H + P +E RRG DE+ PR R+ +P ++PP Sbjct: 832 PTPDHKPPKA----PHGQKAAPRTEPSGRRGSDEL----TVPRYRTEKPSKSPP 877
>SLAP2_HUMAN (Q9H6Q3) Src-like-adapter 2 (Src-like adapter protein 2) (SLAP-2)| (Modulator of antigen receptor signaling) (MARS) Length = 260 Score = 31.2 bits (69), Expect = 1.9 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -1 Query: 127 SQPAKWGRQRFHYVSCCTKGWSCISSPRLFCP 32 S+PA W R R + + C GW I SPRL P Sbjct: 136 SRPASWDRIRHYRIHCLDNGWLYI-SPRLTFP 166
>SNIP_MOUSE (Q9QWI6) p130Cas-associated protein (p140Cap) (SNAP-25-interacting| protein) (SNIP) Length = 1250 Score = 31.2 bits (69), Expect = 1.9 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = -3 Query: 527 PAGDGQDPEAGGHGDHQGRCGPASEDKERRGRDEME*PDRGPRRRSARPGEAPP 366 P D + P+A H + P +E RRG DE+ PR R+ +P ++PP Sbjct: 1027 PTPDHKPPKA----PHGQKAAPRTEPSGRRGSDEL----TVPRYRTEKPSKSPP 1072
>SNIP_RAT (Q9QXY2) p130Cas-associated protein (p140Cap) (SNAP-25-interacting| protein) (SNIP) Length = 1197 Score = 31.2 bits (69), Expect = 1.9 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = -3 Query: 527 PAGDGQDPEAGGHGDHQGRCGPASEDKERRGRDEME*PDRGPRRRSARPGEAPP 366 P D + P+A H + P +E RRG DE+ PR R+ +P ++PP Sbjct: 994 PTPDHKPPKA----PHGQKAAPRTEPSGRRGSDEL----TVPRYRTEKPSKSPP 1039
>P5I11_HUMAN (O14683) Tumor protein p53-inducible protein 11 (p53-induced| protein 11) Length = 177 Score = 30.8 bits (68), Expect = 2.4 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 13/73 (17%) Frame = -3 Query: 488 GDHQGRCGPASEDKERRGRDEME*PDRGPRRRSARPG-------------EAPPCCEDIL 348 G+H G G +RGR E E G R+ PG E PPCC ++ Sbjct: 84 GNHHGYSGCPETLLGKRGRAEWE---AGTLRKGPSPGICLLLPKPVPLPKELPPCCRALV 140 Query: 347 DTWGRETIATPRN 309 W R T A+ R+ Sbjct: 141 --WPRATTASHRH 151
>AROA_LISIN (Q92A85) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 428 Score = 30.0 bits (66), Expect = 4.1 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Frame = -1 Query: 496 EGTVIIRDDVDLLVK----IKSVADGM-RWNSQIVDHEDGPLVREKLLLVVKTYWTLGDE 332 EGT II+D +L VK I +VA+ + + + I EDG ++R K L + GD Sbjct: 327 EGTTIIKDAAELKVKETNRIDAVANELNKMGADITPTEDGLIIRGKTPLHAANVTSYGDH 386 Query: 331 K 329 + Sbjct: 387 R 387
>YCF2_LOTJA (Q9B1K6) Protein ycf2| Length = 2298 Score = 30.0 bits (66), Expect = 4.1 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = +2 Query: 275 SICQFSQFLMLYFGASLLFLVPKCPVCLHNKEELLPDERTVFVVHDLAIPSHPVRDALY 451 S+C F +L+F LLFL P + +P R+ +++L P+HP+ + L+ Sbjct: 868 SLCFFLYKFLLFFSKFLLFLSKSLPFFFVSFGS-IPIHRSEIHIYELKSPNHPLCNQLF 925
>ALMS1_MOUSE (Q8K4E0) Alstrom syndrome protein 1 homolog| Length = 3251 Score = 29.6 bits (65), Expect = 5.4 Identities = 13/27 (48%), Positives = 18/27 (66%) Frame = +2 Query: 320 SLLFLVPKCPVCLHNKEELLPDERTVF 400 SL+FL PK P+ L + LPD +T+F Sbjct: 2246 SLVFLGPKSPLDLQVAQSSLPDSKTIF 2272
>PTGIS_BOVIN (Q29626) Prostacyclin synthase (EC 5.3.99.4) (Prostaglandin I2| synthase) Length = 500 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = -1 Query: 436 DGMRWN--SQIVDHEDGPLVREKLLLVVKTYWTLGDEKQ*RRPEIKHEKLRKLTD 278 D + W S++ H + E++ V ++ GDEK +P + H++L+ LTD Sbjct: 84 DAVVWEPRSRLDFHAYAVFLMERIFDVQLPHYNPGDEKSKMKPTLLHKELQALTD 138
>AROA_LISMF (Q71Y92) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 428 Score = 29.3 bits (64), Expect = 7.1 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Frame = -1 Query: 496 EGTVIIRDDVDLLVKIKSVADGM-----RWNSQIVDHEDGPLVREKLLLVVKTYWTLGDE 332 EGT II+D +L VK + D + + + I EDG ++R K L + GD Sbjct: 327 EGTTIIKDAAELKVKETNRIDAVATELNKMGADITPTEDGLIIRGKTPLHAANVTSYGDH 386 Query: 331 K 329 + Sbjct: 387 R 387
>TTC15_HUMAN (Q8WVT3) Tetratricopeptide repeat protein 15 (TPR repeat protein| 15) Length = 735 Score = 28.9 bits (63), Expect = 9.2 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 5/64 (7%) Frame = -3 Query: 527 PAGDGQD-PEAGG----HGDHQGRCGPASEDKERRGRDEME*PDRGPRRRSARPGEAPPC 363 P G+G PE G G+ G C P G + P +ARP + PP Sbjct: 94 PGGEGDPGPEPAGTPSPSGEADGDCAPEDAAPSSGGAPRQDAAREVPGSEAARPEQEPPV 153 Query: 362 CEDI 351 E + Sbjct: 154 AEPV 157
>PDR15_YEAST (Q04182) ATP-dependent permease PDR15| Length = 1529 Score = 28.9 bits (63), Expect = 9.2 Identities = 12/46 (26%), Positives = 22/46 (47%) Frame = -1 Query: 289 KLTDTGQMSQPAFLSLCSPCGFEVLSCWVILFGENS*T*WRHAQVY 152 KL TG +S P+ +CS C + ++ F + WR+ ++ Sbjct: 1451 KLAGTGYLSDPSATDICSFCAVSTTNAFLATFSSHYYRRWRNYGIF 1496
>POLN_LORDV (P54634) Non-structural polyprotein [Contains: p48; Helicase| (2C-like protein) (P2C); 3A-like protein; Viral genome-linked protein (VPg); Thiol protease P3C (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed RNA polymerase (EC 2.7.7.48)] Length = 1699 Score = 28.9 bits (63), Expect = 9.2 Identities = 15/27 (55%), Positives = 16/27 (59%) Frame = +3 Query: 195 KRMTQQDKTSKPQGEHSERKAGCDICP 275 KRM QD SKPQ E +E A D CP Sbjct: 831 KRMNIQDLWSKPQVEDTEDTANKDGCP 857
>ROL6_CAEEL (P20784) Cuticle collagen rol-6 (Protein roller-6)| Length = 348 Score = 28.9 bits (63), Expect = 9.2 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 4/68 (5%) Frame = -3 Query: 527 PAGDGQDPEAGGHGDHQ----GRCGPASEDKERRGRDEME*PDRGPRRRSARPGEAPPCC 360 P DG+ GG GD GR GP G E P +GP R A PG++ P Sbjct: 240 PGSDGKPGSPGGKGDDGERPLGRPGPRGPP----GEAGPEGP-QGPTGRDAYPGQSGPQG 294 Query: 359 EDILDTWG 336 E L +G Sbjct: 295 EPGLQGYG 302
>S45A1_RAT (Q8K4S3) Proton-associated sugar transporter A (PAST-A) (Solute| carrier family 45 member 1) Length = 751 Score = 28.9 bits (63), Expect = 9.2 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +3 Query: 96 NLCLPHLAGWLSFPCQNLSYT 158 NLC+ H GWLSF L YT Sbjct: 528 NLCVNHFLGWLSFEGMLLFYT 548
>S45A1_MOUSE (Q8BIV7) Proton-associated sugar transporter A (PAST-A) (Solute| carrier family 45 member 1) (Deleted in neuroblastoma 5 protein homolog) (DNb-5 homolog) Length = 751 Score = 28.9 bits (63), Expect = 9.2 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +3 Query: 96 NLCLPHLAGWLSFPCQNLSYT 158 NLC+ H GWLSF L YT Sbjct: 528 NLCVNHFLGWLSFEGMLLFYT 548
>SYV_RHIME (Q92Q37) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 947 Score = 28.9 bits (63), Expect = 9.2 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Frame = -3 Query: 386 RPGEAPPCCEDILDTWGR------ETIATPRNKA*ETEKIDRYWAD--VTTGLPLTVFAL 231 +PGE ED+LDTW T+ P+ ET ++D+Y+ + TG + F Sbjct: 498 KPGEILTRDEDVLDTWFSSALWPFSTLGWPK----ETPELDKYYQTDVLVTGFDIIFF-- 551 Query: 230 WF*SFILLGHSF 195 W +++G F Sbjct: 552 WVARMMMMGLHF 563
>IE68_PRVKA (P24827) Immediate-early protein RSP40| Length = 364 Score = 28.9 bits (63), Expect = 9.2 Identities = 15/51 (29%), Positives = 22/51 (43%) Frame = -3 Query: 521 GDGQDPEAGGHGDHQGRCGPASEDKERRGRDEME*PDRGPRRRSARPGEAP 369 G+ ++ E G G G G ED++ G + + R R RP AP Sbjct: 314 GEDEEDEEGEDGGEDGEDGEEDEDEDGEGEEGGKDAARRGTRAPTRPAAAP 364 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,395,069 Number of Sequences: 219361 Number of extensions: 1904168 Number of successful extensions: 5508 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5245 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5500 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
